ClCG02G010880 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G010880
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	NBS-LRR class disease resistance protein
Location	CG_Chr02 : 22212834 .. 22213504 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTACGTTACCAATACTACTTTTCATGCATGAGTTCCGTTGGTTTTTTTTCTTTTCCCCTTAAAGAACATTTTCAAAATCTCAGCTAAATATGGAGAAGTTTGTTTCATTTTTAGGATTTGATTAGACGTGATTTCCAAAAAATAGAAAAGTAAAAATAAAATCATTAGCAGATAGAGCTTTTAACTTCTAACTCAGATCATACCTCACTTTAACAATTGCAGCAAACGATAGTGATCCGAGTGTCGATGAAGAGGGGATCCAAGTACCGCAGCAAAGCTTTGAAGATTGCAGCATCTGTCTCAAGTAATTAAACATACATATAAGATAATTTATTTAAATATTGAAAATATTTAAAAATATATCCAAGGATAGTTAATTTACGATGGGAATTACAGGTAATATTGAGAAAATTAGCTTGGTCGGGGACGATAAAGATAAAGTGGAGGTAGTTGGAGATCTCGATCCAATAAAACTTACTGAAGTGCTGCGAAAGGGTTTTGGCTCCGCACATTTGGAGTCAGTGAGCCTAGTTGAAGACAAAGACAAAGACAAAGACAAAGATAAAGAACCTGGTATAACGTGGACATGCTCGTGGGGTGTGCCTCATCAATCATCTTATTGTTATTGCTACCTTGGCCCCTACCCTTCCTATTCTATATGGTGA

mRNA sequence

ATGAAGCAAACGATAGTGATCCGAGTGTCGATGAAGAGGGGATCCAAGTACCGCAGCAAAGCTTTGAAGATTGCAGCATCTGTCTCAAGTAATATTGAGAAAATTAGCTTGGTCGGGGACGATAAAGATAAAGTGGAGGTAGTTGGAGATCTCGATCCAATAAAACTTACTGAAGTGCTGCGAAAGGGTTTTGGCTCCGCACATTTGGAGTCAGTGAGCCTAGTTGAAGACAAAGACAAAGACAAAGACAAAGATAAAGAACCTGGTATAACGTGGACATGCTCGTGGGGTGTGCCTCATCAATCATCTTATTGTTATTGCTACCTTGGCCCCTACCCTTCCTATTCTATATGGTGA

Coding sequence (CDS)

ATGAAGCAAACGATAGTGATCCGAGTGTCGATGAAGAGGGGATCCAAGTACCGCAGCAAAGCTTTGAAGATTGCAGCATCTGTCTCAAGTAATATTGAGAAAATTAGCTTGGTCGGGGACGATAAAGATAAAGTGGAGGTAGTTGGAGATCTCGATCCAATAAAACTTACTGAAGTGCTGCGAAAGGGTTTTGGCTCCGCACATTTGGAGTCAGTGAGCCTAGTTGAAGACAAAGACAAAGACAAAGACAAAGATAAAGAACCTGGTATAACGTGGACATGCTCGTGGGGTGTGCCTCATCAATCATCTTATTGTTATTGCTACCTTGGCCCCTACCCTTCCTATTCTATATGGTGA

Protein sequence

MKQTIVIRVSMKRGSKYRSKALKIAASVSSNIEKISLVGDDKDKVEVVGDLDPIKLTEVLRKGFGSAHLESVSLVEDKDKDKDKDKEPGITWTCSWGVPHQSSYCYCYLGPYPSYSIW

Homology

[Close]

BLAST of ClCG02G010880 vs. TrEMBL
Match: A0A0A0KAU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113600 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.1e-46
Identity = 98/119 (82.35%), Postives = 104/119 (87.39%), Query Frame = 1


Query: 1   MKQTIVIRVSMKRGSKYRSKALKIAASVSSNIEKISLVGDDKDKVEVVGDLDPIKLTEVL 60
           MKQ IVI+VSMKRG KYRSKALKIAASV  +IE ISLVGD KDKVEVVGDLDPI+LTE+L
Sbjct: 1   MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELL 60

Query: 61  RKGFGSAHLESVSLVEDKDKDKDKDKEPGITWTCSWGVPHQSSYCYCY-LGPYPSYSIW 119
           RKGFGSA LESVS VEDK+K KDKD   GITWTCSWGVPH SSYCYCY L PYPS+SIW
Sbjct: 61  RKGFGSAQLESVSAVEDKEKKKDKD--DGITWTCSWGVPHHSSYCYCYNLRPYPSHSIW 117

[Close]

BLAST of ClCG02G010880 vs. TrEMBL
Match: A0A059A2R2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K01377 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.1e-14
Identity = 54/126 (42.86%), Postives = 77/126 (61.11%), Query Frame = 1


Query: 1   MKQTIVIRVSMK-RGSKY--------RSKALKIAASVSSNIEKISLVGDDKDKVEVVGDL 60
           MKQ +VI VSMK   +++         SKALK+A      ++ ++LVG D+D++EV GD+
Sbjct: 1   MKQKVVINVSMKDHATRFFCFSPRNPHSKALKLAGGFQG-VQSVALVG-DQDRIEVTGDV 60

Query: 61  DPIKLTEVLRKGFGSAHLESVSLVEDKDKDKDKDKE-PGITWTCSWGVPHQSSYCYCYLG 116
           D + LT +LRK  G A + +VS +++KDK + KDKE P I W    GVPH+      Y+ 
Sbjct: 61  DAVNLTTLLRKKVGFAKIVTVSKLDEKDKKESKDKEAPPIVWPYIGGVPHRE---IAYVA 120

[Close]

BLAST of ClCG02G010880 vs. TrEMBL
Match: A0A164WBG7_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_021079 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.2e-13
Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = 1


Query: 1   MKQTIVIRVSMKRGSKYRSKALKIAASVSSNIEKISLVGDDKDKVEVVG-DLDPIKLTEV 60
           MKQ +VIRV M    K R+KA+KIAA+  S +E +++ GDDKDK+EV+G ++D + L ++
Sbjct: 1   MKQKVVIRVDMSDPKKSRAKAMKIAATF-SGVESVAIKGDDKDKLEVIGEEIDTVVLAKL 60

Query: 61  LRKGFGSAHLESVSLVEDKDKDKDKDKEPGITWTCSWGVPHQSSYCYCYLGPYPSY 116
           LRK  G A L S+  V+D  KDK KD+         +G  +  +Y YC   P PSY
Sbjct: 61  LRKSXGRADLVSIGPVKDDKKDK-KDEVKIKPKLQGYGSNYPYNYYYC--EPVPSY 112

[Close]

BLAST of ClCG02G010880 vs. TrEMBL
Match: A0A0D2QTX7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G164100 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.9e-13
Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = 1


Query: 1  MKQTIVIRVSMKRGSKYRSKALKIAASVSSNIEKISLVGDDKDKVEVVGD-LDPIKLTEV 60
          MKQ +V++V+MK G K RSKALKI   +S  +E  SL GDDK ++EV GD +D +KLT +
Sbjct: 1  MKQKMVVKVTMK-GEKSRSKALKIVVGLSG-VESASLKGDDKSQIEVTGDGVDAVKLTSL 60

Query: 61 LRKGFGSAHLESVSLVEDKDKDKDKDK 87
          LRKG G A L SVS  + KD  KD+ K
Sbjct: 61 LRKGVGYAELVSVSAADKKDDKKDETK 85

[Close]

BLAST of ClCG02G010880 vs. TrEMBL
Match: B9SF21_RICCO (Metal ion binding protein, putative OS=Ricinus communis GN=RCOM_1213020 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.0e-12
Identity = 58/122 (47.54%), Postives = 71/122 (58.20%), Query Frame = 1


Query: 1   MKQTIVIRVSMKRGSKYRSKALKIAASVSSNIEKISLVGDDKDKVEVVGD-LDPIKLTEV 60
           MKQ +VIRVSM  G K RSKALKIA SVS  +E  SL G DK ++EVVGD +D ++L  +
Sbjct: 1   MKQKVVIRVSMN-GQKSRSKALKIAVSVSG-VESASLGGQDKSQIEVVGDGVDAVELATM 60

Query: 61  LRKGFGSAHLESVSLV-----EDKDKDKDKDKEPGITWT-CSWGVP---HQSSYCYCYLG 113
           LRK  G A L SVS V     E K++ KD  K   + W     GVP   ++   C  Y  
Sbjct: 61  LRKNVGHAELVSVSAVGEKKEEKKEEKKDDPKVQHMVWPYYGGGVPSYGYEVKGCNQYPD 120

[Close]

BLAST of ClCG02G010880 vs. TAIR10
Match: AT5G48290.1 (AT5G48290.1 Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-06
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 1


Query: 1  MKQTIVIRVSMKRGSKYRSKALKIAASVSSNIEKISLVGDDKDKVEVVG-DLDPIKLTEV 60
          MKQ I+IRV+M    K R+KA+  A      +  + + GD ++++EV G ++D I L ++
Sbjct: 1  MKQKILIRVTMT-DDKTRAKAMTKAVQFKG-VSAVEIKGDHRNQIEVTGVEVDMIPLIQI 60

Query: 61 LRKGFGSAHLESVSLVEDKDKDKDK 85
          LRK    A L SV+ VE   K+ +K
Sbjct: 61 LRKKVAFAELVSVTKVEPPKKEDEK 83

[Close]

BLAST of ClCG02G010880 vs. NCBI nr
Match: gi|659094578|ref|XP_008448137.1| (PREDICTED: uncharacterized protein LOC103490424 [Cucumis melo])

HSP 1 Score: 200.3 bits (508), Expect = 1.9e-48
Identity = 100/120 (83.33%), Postives = 108/120 (90.00%), Query Frame = 1


Query: 1   MKQTIVIRVSMKRGSKYRSKALKIAASVSSNIEKISLVGDDKDKVEVVGDLDPIKLTEVL 60
           MKQ IVIRVSMKRG KYRSKALKIAASV  +IE ISLVGDDKDKVEVVGD+DP++LTE+L
Sbjct: 1   MKQKIVIRVSMKRGPKYRSKALKIAASVKGSIETISLVGDDKDKVEVVGDIDPMELTELL 60

Query: 61  RKGFGSAHLESVSLVEDKDKDKDKD--KEPGITWTCSWGVPHQSSYCYCY-LGPYPSYSI 118
           RKGFGSA LE+V+ VEDKDKDKDKD  K+ GITWTCSWGVPH SSYCYCY LGPYPSYSI
Sbjct: 61  RKGFGSAQLETVNAVEDKDKDKDKDKNKDGGITWTCSWGVPHHSSYCYCYNLGPYPSYSI 120

[Close]

BLAST of ClCG02G010880 vs. NCBI nr
Match: gi|449444610|ref|XP_004140067.1| (PREDICTED: uncharacterized protein LOC101216311 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 3.0e-46
Identity = 98/119 (82.35%), Postives = 104/119 (87.39%), Query Frame = 1


Query: 1   MKQTIVIRVSMKRGSKYRSKALKIAASVSSNIEKISLVGDDKDKVEVVGDLDPIKLTEVL 60
           MKQ IVI+VSMKRG KYRSKALKIAASV  +IE ISLVGD KDKVEVVGDLDPI+LTE+L
Sbjct: 1   MKQKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELL 60

Query: 61  RKGFGSAHLESVSLVEDKDKDKDKDKEPGITWTCSWGVPHQSSYCYCY-LGPYPSYSIW 119
           RKGFGSA LESVS VEDK+K KDKD   GITWTCSWGVPH SSYCYCY L PYPS+SIW
Sbjct: 61  RKGFGSAQLESVSAVEDKEKKKDKD--DGITWTCSWGVPHHSSYCYCYNLRPYPSHSIW 117

[Close]

BLAST of ClCG02G010880 vs. NCBI nr
Match: gi|702492055|ref|XP_010036115.1| (PREDICTED: uncharacterized protein LOC104425195 [Eucalyptus grandis])

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 54/126 (42.86%), Postives = 77/126 (61.11%), Query Frame = 1


Query: 1   MKQTIVIRVSMK-RGSKY--------RSKALKIAASVSSNIEKISLVGDDKDKVEVVGDL 60
           MKQ +VI VSMK   +++         SKALK+A      ++ ++LVG D+D++EV GD+
Sbjct: 1   MKQKVVINVSMKDHATRFFCFSPRNPHSKALKLAGGFQG-VQSVALVG-DQDRIEVTGDV 60

Query: 61  DPIKLTEVLRKGFGSAHLESVSLVEDKDKDKDKDKE-PGITWTCSWGVPHQSSYCYCYLG 116
           D + LT +LRK  G A + +VS +++KDK + KDKE P I W    GVPH+      Y+ 
Sbjct: 61  DAVNLTTLLRKKVGFAKIVTVSKLDEKDKKESKDKEAPPIVWPYIGGVPHRE---IAYVA 120

[Close]

BLAST of ClCG02G010880 vs. NCBI nr
Match: gi|1021033772|gb|KZM91556.1| (hypothetical protein DCAR_021079 [Daucus carota subsp. sativus])

HSP 1 Score: 82.0 bits (201), Expect = 7.5e-13
Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = 1


Query: 1   MKQTIVIRVSMKRGSKYRSKALKIAASVSSNIEKISLVGDDKDKVEVVG-DLDPIKLTEV 60
           MKQ +VIRV M    K R+KA+KIAA+  S +E +++ GDDKDK+EV+G ++D + L ++
Sbjct: 1   MKQKVVIRVDMSDPKKSRAKAMKIAATF-SGVESVAIKGDDKDKLEVIGEEIDTVVLAKL 60

Query: 61  LRKGFGSAHLESVSLVEDKDKDKDKDKEPGITWTCSWGVPHQSSYCYCYLGPYPSY 116
           LRK  G A L S+  V+D  KDK KD+         +G  +  +Y YC   P PSY
Sbjct: 61  LRKSXGRADLVSIGPVKDDKKDK-KDEVKIKPKLQGYGSNYPYNYYYC--EPVPSY 112

[Close]

BLAST of ClCG02G010880 vs. NCBI nr
Match: gi|823189924|ref|XP_012490993.1| (PREDICTED: uncharacterized protein LOC105803388 [Gossypium raimondii])

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-12
Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = 1


Query: 1  MKQTIVIRVSMKRGSKYRSKALKIAASVSSNIEKISLVGDDKDKVEVVGD-LDPIKLTEV 60
          MKQ +V++V+MK G K RSKALKI   +S  +E  SL GDDK ++EV GD +D +KLT +
Sbjct: 1  MKQKMVVKVTMK-GEKSRSKALKIVVGLSG-VESASLKGDDKSQIEVTGDGVDAVKLTSL 60

Query: 61 LRKGFGSAHLESVSLVEDKDKDKDKDK 87
          LRKG G A L SVS  + KD  KD+ K
Sbjct: 61 LRKGVGYAELVSVSAADKKDDKKDETK 85

The following BLAST results are available for this feature:

BLAST of ClCG02G010880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAU7_CUCSA	2.1e-46	82.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113600 PE=4 SV=1	[more]
A0A059A2R2_EUCGR	8.1e-14	42.86	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K01377 PE=4 SV=1	[more]
A0A164WBG7_DAUCA	5.2e-13	43.97	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_021079 PE=4 SV=1	[more]
A0A0D2QTX7_GOSRA	8.9e-13	54.02	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G164100 PE=4 SV=1	[more]
B9SF21_RICCO	2.0e-12	47.54	Metal ion binding protein, putative OS=Ricinus communis GN=RCOM_1213020 PE=4 SV=...	[more]

BLAST of ClCG02G010880 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48290.1	1.9e-06	37.65	Heavy metal transport/detoxification superfamily protein	[more]

BLAST of ClCG02G010880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094578\|ref\|XP_008448137.1\|	1.9e-48	83.33	PREDICTED: uncharacterized protein LOC103490424 [Cucumis melo]	[more]
gi\|449444610\|ref\|XP_004140067.1\|	3.0e-46	82.35	PREDICTED: uncharacterized protein LOC101216311 [Cucumis sativus]	[more]
gi\|702492055\|ref\|XP_010036115.1\|	1.2e-13	42.86	PREDICTED: uncharacterized protein LOC104425195 [Eucalyptus grandis]	[more]
gi\|1021033772\|gb\|KZM91556.1\|	7.5e-13	43.97	hypothetical protein DCAR_021079 [Daucus carota subsp. sativus]	[more]
gi\|823189924\|ref\|XP_012490993.1\|	1.3e-12	54.02	PREDICTED: uncharacterized protein LOC105803388 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030001	metal ion transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0032559	adenyl ribonucleotide binding
molecular_function	GO:0043168	anion binding
molecular_function	GO:0032550	purine ribonucleoside binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G010880.1	ClCG02G010880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 1..87 score: 9.0
None	No IPR available	PANTHER	PTHR22814:SF34	COPPER TRANSPORT PROTEIN-RELATED	coord: 1..87 score: 9.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G010880	Csa6G113600	Cucumber (Chinese Long) v2	cuwcgB457
ClCG02G010880	MELO3C013462	Melon (DHL92) v3.5.1	mewcgB112
ClCG02G010880	Cla006873	Watermelon (97103) v1	wcgwmB199
ClCG02G010880	Cla97C02G036650	Watermelon (97103) v2	wcgwmbB138
ClCG02G010880	Bhi10G000992	Wax gourd	wcgwgoB287
ClCG02G010880	CSPI06G09380	Wild cucumber (PI 183967)	cpiwcgB479
ClCG02G010880	Cucsa.120140	Cucumber (Gy14) v1	cgywcgB183
ClCG02G010880	Lsi10G000310	Bottle gourd (USVL1VR-Ls)	lsiwcgB052
ClCG02G010880	CsGy6G009470	Cucumber (Gy14) v2	cgybwcgB420
ClCG02G010880	MELO3C013462.2	Melon (DHL92) v3.6.1	medwcgB108
ClCG02G010880	CsaV3_6G009780	Cucumber (Chinese Long) v3	cucwcgB478

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G010880	Silver-seed gourd	carwcgB0195
ClCG02G010880	Silver-seed gourd	carwcgB0337
ClCG02G010880	Silver-seed gourd	carwcgB0827
ClCG02G010880	Cucurbita maxima (Rimu)	cmawcgB461
ClCG02G010880	Cucurbita maxima (Rimu)	cmawcgB486
ClCG02G010880	Cucurbita maxima (Rimu)	cmawcgB546
ClCG02G010880	Cucurbita moschata (Rifu)	cmowcgB486
ClCG02G010880	Cucurbita moschata (Rifu)	cmowcgB543
ClCG02G010880	Watermelon (97103) v1	wcgwmB197
ClCG02G010880	Cucurbita pepo (Zucchini)	cpewcgB235
ClCG02G010880	Cucurbita pepo (Zucchini)	cpewcgB271
ClCG02G010880	Cucurbita pepo (Zucchini)	cpewcgB649