Csa6G094160 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G094160
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 6436892 .. 6437305 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGTATGAAATAAGTTTAATTTCCAATTTCCATATAGTTAATTACTTTGATTATAGTTACAAGGTAGTTGAAATTATAATATTTGTATGCTTTTTTGTTGTTTGGATACGGAAAAAAAATAGGAGTAATAAGTGCAGAAATTGACAAGGAGGTTCCTGAACTGATAACGGTGAAGGGAGTTTTTGAAGTGAAAAAGCTTTTGGCTCACATCCGAAGAGGAGTGGAGAAAATTGCCACGGTCATCAAAGAAGAACCCGCCTCTGCCGGAGGAGAAGATCAACAAAGAGAAGCTGCTGGAGAAGGGACTAGCCGTGGACCTAACCACGAGATAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGATGGAGATGGAGAGATAAGAGTTATCCATAATCCCTAA

mRNA sequence

ATGAAAGGAGTAATAAGTGCAGAAATTGACAAGGAGGTTCCTGAACTGATAACGGTGAAGGGAGTTTTTGAAGTGAAAAAGCTTTTGGCTCACATCCGAAGAGGAGTGGAGAAAATTGCCACGGTCATCAAAGAAGAACCCGCCTCTGCCGGAGGAGAAGATCAACAAAGAGAAGCTGCTGGAGAAGGGACTAGCCGTGGACCTAACCACGAGATAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGATGGAGATGGAGAGATAAGAGTTATCCATAATCCCTAA

Coding sequence (CDS)

ATGAAAGGAGTAATAAGTGCAGAAATTGACAAGGAGGTTCCTGAACTGATAACGGTGAAGGGAGTTTTTGAAGTGAAAAAGCTTTTGGCTCACATCCGAAGAGGAGTGGAGAAAATTGCCACGGTCATCAAAGAAGAACCCGCCTCTGCCGGAGGAGAAGATCAACAAAGAGAAGCTGCTGGAGAAGGGACTAGCCGTGGACCTAACCACGAGATAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGATGGAGATGGAGAGATAAGAGTTATCCATAATCCCTAA

Protein sequence

MKGVISAEIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATVIKEEPASAGGEDQQREAAGEGTSRGPNHEIEEEEEEDDDDDDDDGDGEIRVIHNP*

Homology

[Close]

BLAST of Csa6G094160 vs. TrEMBL
Match: A0A0A0KDJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G094160 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 2.7e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MKGVISAEIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATVIKEEPASAGGEDQQREAA 60
          MKGVISAEIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATVIKEEPASAGGEDQQREAA
Sbjct: 1  MKGVISAEIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATVIKEEPASAGGEDQQREAA 60

Query: 61 GEGTSRGPNHEIEEEEEEDDDDDDDDGDGEIRVIHNP 98
          GEGTSRGPNHEIEEEEEEDDDDDDDDGDGEIRVIHNP
Sbjct: 61 GEGTSRGPNHEIEEEEEEDDDDDDDDGDGEIRVIHNP 97

[Close]

BLAST of Csa6G094160 vs. NCBI nr
Match: gi|700191243|gb|KGN46447.1| (hypothetical protein Csa_6G094160 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 3.9e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MKGVISAEIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATVIKEEPASAGGEDQQREAA 60
          MKGVISAEIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATVIKEEPASAGGEDQQREAA
Sbjct: 1  MKGVISAEIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATVIKEEPASAGGEDQQREAA 60

Query: 61 GEGTSRGPNHEIEEEEEEDDDDDDDDGDGEIRVIHNP 98
          GEGTSRGPNHEIEEEEEEDDDDDDDDGDGEIRVIHNP
Sbjct: 61 GEGTSRGPNHEIEEEEEEDDDDDDDDGDGEIRVIHNP 97

[Close]

BLAST of Csa6G094160 vs. NCBI nr
Match: gi|778722058|ref|XP_011658396.1| (PREDICTED: uncharacterized protein LOC105435985 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 7.6e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 1  MKGVISAEIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATVIKEEPASAGGEDQQREAA 60
          MKGVISAEIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATVIKEEPASAGGEDQQREAA
Sbjct: 8  MKGVISAEIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATVIKEEPASAGGEDQQREAA 67

Query: 61 GEGTSR 67
          GEGTSR
Sbjct: 68 GEGTSR 73

The following BLAST results are available for this feature:

BLAST of Csa6G094160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDJ7_CUCSA	2.7e-47	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G094160 PE=4 SV=1	[more]

BLAST of Csa6G094160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191243\|gb\|KGN46447.1\|	3.9e-47	100.00	hypothetical protein Csa_6G094160 [Cucumis sativus]	[more]
gi\|778722058\|ref\|XP_011658396.1\|	7.6e-27	100.00	PREDICTED: uncharacterized protein LOC105435985 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G094160.1	Csa6G094160.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G094160	Cla001509	Watermelon (97103) v1	cuwmB537
Csa6G094160	MELO3C022328	Melon (DHL92) v3.5.1	cumeB442
Csa6G094160	ClCG06G002020	Watermelon (Charleston Gray)	cuwcgB476
Csa6G094160	MELO3C022328.2	Melon (DHL92) v3.6.1	cumedB422
Csa6G094160	Cla97C06G111330	Watermelon (97103) v2	cuwmbB468
Csa6G094160	CSPI06G07690	Wild cucumber (PI 183967)	cpicuB314
Csa6G094160	Cp4.1LG01g11920	Cucurbita pepo (Zucchini)	cpecuB464

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G094160	Silver-seed gourd	carcuB0012
Csa6G094160	Silver-seed gourd	carcuB0995
Csa6G094160	Wax gourd	cuwgoB533
Csa6G094160	Wax gourd	cuwgoB639
Csa6G094160	Cucumber (Chinese Long) v2	cucuB117
Csa6G094160	Cucumber (Gy14) v1	cgycuB490
Csa6G094160	Cucurbita maxima (Rimu)	cmacuB367
Csa6G094160	Cucurbita maxima (Rimu)	cmacuB903
Csa6G094160	Cucurbita moschata (Rifu)	cmocuB358
Csa6G094160	Cucurbita moschata (Rifu)	cmocuB889
Csa6G094160	Cucurbita pepo (Zucchini)	cpecuB322
Csa6G094160	Cucurbita pepo (Zucchini)	cpecuB626
Csa6G094160	Cucurbita pepo (Zucchini)	cpecuB874
Csa6G094160	Bottle gourd (USVL1VR-Ls)	culsiB402
Csa6G094160	Cucumber (Gy14) v2	cgybcuB143
Csa6G094160	Cucumber (Gy14) v2	cgybcuB282