Cp4.1LG01g11920 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g11920
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 5820767 .. 5821070 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGTATGGTCGTTAATAAAGTAGATTTGGAGTAGAATGAGAAATGTATATGTGTTGAAATAGTTTGGATTTGAAAAAGGGGTTGAAAGCGTAGAAGTTGAGGAGGAGAACCCTGAGCTGATACGAGTAACGGGAGTTTTTGAAGTGCAAAAGCTTGTGGCCCACATCCGAAGAGGAGTCGATAAAATTGTCACCGTTATCAGACAAGAAAACGCCGCCGGAGGAGGTAGCGGCGACGGGGAAGAACAAATAGAAGATGCACCTACCGGAGGAAGCCGACCAGATCAAAGAAGTAGATGA

mRNA sequence

ATGAAAGGGGTTGAAAGCGTAGAAGTTGAGGAGGAGAACCCTGAGCTGATACGAGTAACGGGAGTTTTTGAAGTGCAAAAGCTTGTGGCCCACATCCGAAGAGGAGTCGATAAAATTGTCACCGTTATCAGACAAGAAAACGCCGCCGGAGGAGGTAGCGGCGACGGGGAAGAACAAATAGAAGATGCACCTACCGGAGGAAGCCGACCAGATCAAAGAAGTAGATGA

Coding sequence (CDS)

ATGAAAGGGGTTGAAAGCGTAGAAGTTGAGGAGGAGAACCCTGAGCTGATACGAGTAACGGGAGTTTTTGAAGTGCAAAAGCTTGTGGCCCACATCCGAAGAGGAGTCGATAAAATTGTCACCGTTATCAGACAAGAAAACGCCGCCGGAGGAGGTAGCGGCGACGGGGAAGAACAAATAGAAGATGCACCTACCGGAGGAAGCCGACCAGATCAAAGAAGTAGATGA

Protein sequence

MKGVESVEVEEENPELIRVTGVFEVQKLVAHIRRGVDKIVTVIRQENAAGGGSGDGEEQIEDAPTGGSRPDQRSR
Homology
[Close]
BLAST of Cp4.1LG01g11920 vs. TrEMBL
Match: A0A0A0KDJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G094160 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.7e-10
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 1  MKGVESVEVEEENPELIRVTGVFEVQKLVAHIRRGVDKIVTVIRQENAAGGGSGDGEEQI 60
          MKGV S E+++E PELI V GVFEV+KL+AHIRRGV+KI TVI++E A+ GG    ++Q 
Sbjct: 1  MKGVISAEIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATVIKEEPASAGGE---DQQR 60

Query: 61 EDAPTGGSR 70
          E A  G SR
Sbjct: 61 EAAGEGTSR 66

[Close]
BLAST of Cp4.1LG01g11920 vs. NCBI nr
Match: gi|778722058|ref|XP_011658396.1| (PREDICTED: uncharacterized protein LOC105435985 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-09
Identity = 41/72 (56.94%), Postives = 54/72 (75.00%), Query Frame = 1 

Query: 1  MKGVESVEVEEENPELIRVTGVFEVQKLVAHIRRGVDKIVTVIRQENAAGGGSGDGEEQI 60
          MKGV S E+++E PELI V GVFEV+KL+AHIRRGV+KI TVI++E A+ GG    ++Q 
Sbjct: 8  MKGVISAEIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATVIKEEPASAGGE---DQQR 67

Query: 61 EDAPTGGSRPDQ 73
          E A  G SR ++
Sbjct: 68 EAAGEGTSRVEE 76

[Close]
BLAST of Cp4.1LG01g11920 vs. NCBI nr
Match: gi|700191243|gb|KGN46447.1| (hypothetical protein Csa_6G094160 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-09
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 1  MKGVESVEVEEENPELIRVTGVFEVQKLVAHIRRGVDKIVTVIRQENAAGGGSGDGEEQI 60
          MKGV S E+++E PELI V GVFEV+KL+AHIRRGV+KI TVI++E A+ GG    ++Q 
Sbjct: 1  MKGVISAEIDKEVPELITVKGVFEVKKLLAHIRRGVEKIATVIKEEPASAGGE---DQQR 60

Query: 61 EDAPTGGSR 70
          E A  G SR
Sbjct: 61 EAAGEGTSR 66

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g11920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g11920 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDJ7_CUCSA7.7e-1059.42Uncharacterized protein OS=Cucumis sativus GN=Csa_6G094160 PE=4 SV=1[more]
BLAST of Cp4.1LG01g11920 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g11920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778722058|ref|XP_011658396.1|1.1e-0956.94PREDICTED: uncharacterized protein LOC105435985 [Cucumis sativus][more]
gi|700191243|gb|KGN46447.1|1.1e-0959.42hypothetical protein Csa_6G094160 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0030001 metal ion transport
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g11920.1Cp4.1LG01g11920.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g11920Cla001509Watermelon (97103) v1cpewmB471
Cp4.1LG01g11920Csa6G094160Cucumber (Chinese Long) v2cpecuB464
Cp4.1LG01g11920MELO3C022328Melon (DHL92) v3.5.1cpemeB389
Cp4.1LG01g11920CSPI06G07690Wild cucumber (PI 183967)cpecpiB465
Cp4.1LG01g11920MELO3C022328.2Melon (DHL92) v3.6.1cpemedB449
Cp4.1LG01g11920CsaV3_6G008070Cucumber (Chinese Long) v3cpecucB0573
Cp4.1LG01g11920Carg11586Silver-seed gourdcarcpeB0024
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g11920Silver-seed gourdcarcpeB0938
Cp4.1LG01g11920Silver-seed gourdcarcpeB1259
Cp4.1LG01g11920Silver-seed gourdcarcpeB1360
Cp4.1LG01g11920Cucumber (Chinese Long) v3cpecucB0541
Cp4.1LG01g11920Wax gourdcpewgoB0495
Cp4.1LG01g11920Wax gourdcpewgoB0553
Cp4.1LG01g11920Cucurbita pepo (Zucchini)cpecpeB330
Cp4.1LG01g11920Cucurbita pepo (Zucchini)cpecpeB374
Cp4.1LG01g11920Cucumber (Gy14) v1cgycpeB0387
Cp4.1LG01g11920Cucumber (Gy14) v1cgycpeB0913
Cp4.1LG01g11920Cucurbita maxima (Rimu)cmacpeB398
Cp4.1LG01g11920Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g11920Cucurbita maxima (Rimu)cmacpeB722
Cp4.1LG01g11920Cucurbita maxima (Rimu)cmacpeB919
Cp4.1LG01g11920Cucurbita moschata (Rifu)cmocpeB360
Cp4.1LG01g11920Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g11920Cucurbita moschata (Rifu)cmocpeB674
Cp4.1LG01g11920Wild cucumber (PI 183967)cpecpiB437
Cp4.1LG01g11920Cucumber (Chinese Long) v2cpecuB437
Cp4.1LG01g11920Bottle gourd (USVL1VR-Ls)cpelsiB312
Cp4.1LG01g11920Bottle gourd (USVL1VR-Ls)cpelsiB354
Cp4.1LG01g11920Watermelon (Charleston Gray)cpewcgB402
Cp4.1LG01g11920Watermelon (Charleston Gray)cpewcgB409
Cp4.1LG01g11920Watermelon (97103) v1cpewmB417
Cp4.1LG01g11920Melon (DHL92) v3.5.1cpemeB365
Cp4.1LG01g11920Cucumber (Gy14) v2cgybcpeB646
Cp4.1LG01g11920Cucumber (Gy14) v2cgybcpeB802
Cp4.1LG01g11920Melon (DHL92) v3.6.1cpemedB441