Csa6G087800 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G087800
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 5819189 .. 5819573 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCAATATGGGCCCGTTTATAATTCCAACACTTCTCAAATTTCTAAAAATCTTGATTACATTCCAGCCTCGGATGGAGGTGGCGGTAATTATTGAAGCATCTAAGTTTGCACAATCTATATTGATATCTGCTCAACTCTAGCTTGACATTGCAAAACTTGGATAGAATGTTCCAGTGGATGGTTTAGGACCGAAATCAAGAACACGAGCATTGCATAAGTACCTGATGATTCAAGAAAGCAGAATATTTCTGATTTTGGTGTATGGATATTCTCACATGTTTGAAGCGGGGACTTTCATGTCCTCATTAAAGCCTTGTTACGAGAACAATTGTGAGTATTTGCCTCTCCTAGTCGTTCCTCTAAGCGAATATATCAGTTGA

mRNA sequence

ATGGCGCAATATGGGCCCGTTTATAATTCCAACACTTCTCAAATTTCTAAAAATCTTGATTACATTCCAGCCTCGGATGGAGGTGGCGTGGATGGTTTAGGACCGAAATCAAGAACACGAGCATTGCATAAGTACCTGATGATTCAAGAAAGCAGAATATTTCTGATTTTGGTGTATGGATATTCTCACATGTTTGAAGCGGGGACTTTCATGTCCTCATTAAAGCCTTGTTACGAGAACAATTGTGAGTATTTGCCTCTCCTAGTCGTTCCTCTAAGCGAATATATCAGTTGA

Coding sequence (CDS)

ATGGCGCAATATGGGCCCGTTTATAATTCCAACACTTCTCAAATTTCTAAAAATCTTGATTACATTCCAGCCTCGGATGGAGGTGGCGTGGATGGTTTAGGACCGAAATCAAGAACACGAGCATTGCATAAGTACCTGATGATTCAAGAAAGCAGAATATTTCTGATTTTGGTGTATGGATATTCTCACATGTTTGAAGCGGGGACTTTCATGTCCTCATTAAAGCCTTGTTACGAGAACAATTGTGAGTATTTGCCTCTCCTAGTCGTTCCTCTAAGCGAATATATCAGTTGA

Protein sequence

MAQYGPVYNSNTSQISKNLDYIPASDGGGVDGLGPKSRTRALHKYLMIQESRIFLILVYGYSHMFEAGTFMSSLKPCYENNCEYLPLLVVPLSEYIS*
Homology
[Close]
BLAST of Csa6G087800 vs. TrEMBL
Match: A0A0A0KD92_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087800 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 4.9e-49
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MAQYGPVYNSNTSQISKNLDYIPASDGGGVDGLGPKSRTRALHKYLMIQESRIFLILVYG 60
          MAQYGPVYNSNTSQISKNLDYIPASDGGGVDGLGPKSRTRALHKYLMIQESRIFLILVYG
Sbjct: 1  MAQYGPVYNSNTSQISKNLDYIPASDGGGVDGLGPKSRTRALHKYLMIQESRIFLILVYG 60

Query: 61 YSHMFEAGTFMSSLKPCYENNCEYLPLLVVPLSEYIS 98
          YSHMFEAGTFMSSLKPCYENNCEYLPLLVVPLSEYIS
Sbjct: 61 YSHMFEAGTFMSSLKPCYENNCEYLPLLVVPLSEYIS 97

[Close]
BLAST of Csa6G087800 vs. NCBI nr
Match: gi|700191148|gb|KGN46352.1| (hypothetical protein Csa_6G087800 [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 7.1e-49
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MAQYGPVYNSNTSQISKNLDYIPASDGGGVDGLGPKSRTRALHKYLMIQESRIFLILVYG 60
          MAQYGPVYNSNTSQISKNLDYIPASDGGGVDGLGPKSRTRALHKYLMIQESRIFLILVYG
Sbjct: 1  MAQYGPVYNSNTSQISKNLDYIPASDGGGVDGLGPKSRTRALHKYLMIQESRIFLILVYG 60

Query: 61 YSHMFEAGTFMSSLKPCYENNCEYLPLLVVPLSEYIS 98
          YSHMFEAGTFMSSLKPCYENNCEYLPLLVVPLSEYIS
Sbjct: 61 YSHMFEAGTFMSSLKPCYENNCEYLPLLVVPLSEYIS 97

The following BLAST results are available for this feature:
BLAST of Csa6G087800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KD92_CUCSA4.9e-49100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087800 PE=4 SV=1[more]
BLAST of Csa6G087800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191148|gb|KGN46352.1|7.1e-49100.00hypothetical protein Csa_6G087800 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU138470cucumber EST collection version 3.0transcribed_cluster
CU148330cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G087800.1Csa6G087800.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU148330CU148330transcribed_cluster
CU138470CU138470transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G087800CsGy6G006840Cucumber (Gy14) v2cgybcuB282
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G087800Melon (DHL92) v3.6.1cumedB422
Csa6G087800Watermelon (97103) v2cuwmbB468
Csa6G087800Wax gourdcuwgoB533
Csa6G087800Cucumber (Gy14) v1cgycuB490
Csa6G087800Cucurbita maxima (Rimu)cmacuB908
Csa6G087800Melon (DHL92) v3.5.1cumeB442
Csa6G087800Watermelon (Charleston Gray)cuwcgB476
Csa6G087800Watermelon (97103) v1cuwmB537
Csa6G087800Cucurbita pepo (Zucchini)cpecuB327
Csa6G087800Bottle gourd (USVL1VR-Ls)culsiB402