Csa6G083550 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G083550
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionHfr-2-like protein; contains IPR023307 (Aerolysin-like toxin, beta complex domain)
LocationChr6 : 5616177 .. 5616626 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACCAAGTATGCTAGCAATGGCGGCATGAGCGAGGCATCTATGGCAGTAAGTTTGAAGTACGTAGTTGAAACTTCTAAATGTTGGGAATCTTCAATCATTGCGGGTTGGGGTGCGATGGTGTCCATTAAAGCCGGGATTCCTGAAATTGCAGAATTTGGGATTGAACTCAACTATAATGAAGAGAGAAGTCACACTTGGGGACAAACCATTACAGAGTACATGAGAGAAGTGATGGCAACATATACTCTTAATGTACCACCAATGACAAGGAGGAAAGTGACTCTTAGTGCAACTAAGGCCAAATGCGATGTTCTGTTTTTGTACACGCAGCGAGACGTTCTCGTCGATGGAAGACAAGTTATTACAGACTGTGATGATGGTCTTTACTCTGAAGTTAATACCTACAACTTTGATTACCAGAACAAGCCTCTTCCATTCTCATGA

mRNA sequence

ATGGCAACCAAGTATGCTAGCAATGGCGGCATGAGCGAGGCATCTATGGCAGTAAGTTTGAAGTACGTAGTTGAAACTTCTAAATGTTGGGAATCTTCAATCATTGCGGGTTGGGGTGCGATGGTGTCCATTAAAGCCGGGATTCCTGAAATTGCAGAATTTGGGATTGAACTCAACTATAATGAAGAGAGAAGTCACACTTGGGGACAAACCATTACAGAGTACATGAGAGAAGTGATGGCAACATATACTCTTAATGTACCACCAATGACAAGGAGGAAAGTGACTCTTAGTGCAACTAAGGCCAAATGCGATGTTCTGTTTTTGTACACGCAGCGAGACGTTCTCGTCGATGGAAGACAAGTTATTACAGACTGTGATGATGGTCTTTACTCTGAAGTTAATACCTACAACTTTGATTACCAGAACAAGCCTCTTCCATTCTCATGA

Coding sequence (CDS)

ATGGCAACCAAGTATGCTAGCAATGGCGGCATGAGCGAGGCATCTATGGCAGTAAGTTTGAAGTACGTAGTTGAAACTTCTAAATGTTGGGAATCTTCAATCATTGCGGGTTGGGGTGCGATGGTGTCCATTAAAGCCGGGATTCCTGAAATTGCAGAATTTGGGATTGAACTCAACTATAATGAAGAGAGAAGTCACACTTGGGGACAAACCATTACAGAGTACATGAGAGAAGTGATGGCAACATATACTCTTAATGTACCACCAATGACAAGGAGGAAAGTGACTCTTAGTGCAACTAAGGCCAAATGCGATGTTCTGTTTTTGTACACGCAGCGAGACGTTCTCGTCGATGGAAGACAAGTTATTACAGACTGTGATGATGGTCTTTACTCTGAAGTTAATACCTACAACTTTGATTACCAGAACAAGCCTCTTCCATTCTCATGA

Protein sequence

MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSIKAGIPEIAEFGIELNYNEERSHTWGQTITEYMREVMATYTLNVPPMTRRKVTLSATKAKCDVLFLYTQRDVLVDGRQVITDCDDGLYSEVNTYNFDYQNKPLPFS*
Homology
[Close]
BLAST of Csa6G083550 vs. TrEMBL
Match: A0A0A0K975_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083550 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 3.7e-80
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSIKAGIPEIAEFGIELNY 60
           MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSIKAGIPEIAEFGIELNY
Sbjct: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSIKAGIPEIAEFGIELNY 60

Query: 61  NEERSHTWGQTITEYMREVMATYTLNVPPMTRRKVTLSATKAKCDVLFLYTQRDVLVDGR 120
           NEERSHTWGQTITEYMREVMATYTLNVPPMTRRKVTLSATKAKCDVLFLYTQRDVLVDGR
Sbjct: 61  NEERSHTWGQTITEYMREVMATYTLNVPPMTRRKVTLSATKAKCDVLFLYTQRDVLVDGR 120

Query: 121 QVITDCDDGLYSEVNTYNFDYQNKPLPFS 150
           QVITDCDDGLYSEVNTYNFDYQNKPLPFS
Sbjct: 121 QVITDCDDGLYSEVNTYNFDYQNKPLPFS 149

[Close]
BLAST of Csa6G083550 vs. TrEMBL
Match: A0A0A0KEW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083560 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 7.5e-57
Identity = 107/149 (71.81%), Postives = 127/149 (85.23%), Query Frame = 1 

Query: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSIKAGIPEIAEFGIELNY 60
           MAT++A+NGG  EASMA+SLKYVVE SKCWESS+   WG + S+KAG+PEI E G+E+N+
Sbjct: 317 MATEHATNGGTKEASMALSLKYVVEASKCWESSVSTAWGVVASVKAGVPEIFEVGVEVNH 376

Query: 61  NEERSHTWGQTITEYMREVMATYTLNVPPMTRRKVTLSATKAKCDVLFLYTQRDVLVDGR 120
           NEE+S +WG+TIT+ MREVMATYT+NVPPMT+ KVTL ATKAKCDV F YTQRDVL DG 
Sbjct: 377 NEEKSRSWGETITD-MREVMATYTVNVPPMTKMKVTLIATKAKCDVPFSYTQRDVLRDGT 436

Query: 121 QVITDCDDGLYSEVNTYNFDYQNKPLPFS 150
            VI DCDDGLY+ V+TYNFDY+NKP PFS
Sbjct: 437 HVIKDCDDGLYTGVHTYNFDYKNKPFPFS 464

[Close]
BLAST of Csa6G083550 vs. TrEMBL
Match: A0A0A0KEW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G082530 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.4e-41
Identity = 91/147 (61.90%), Postives = 110/147 (74.83%), Query Frame = 1 

Query: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSIKAGIPEIAEFGIELNY 60
           MAT+ A N    E  MAVSL+Y+ E SK WESS+  G G   SIKAGIPEI +  I+++Y
Sbjct: 317 MATEEAVNSSSKETVMAVSLRYLEEKSKTWESSLTVGVGIETSIKAGIPEILDTEIKVSY 376

Query: 61  NEERSHTWGQTITEYMREVMATYTLNVPPMTRRKVTLSATKAKCDVLFLYTQRDVLVDGR 120
           N E S+TWG+TI+E  REV ATYT+ VPP TR KVTL ATKAKCD+ F YTQRD+L +GR
Sbjct: 377 NFEASYTWGETISE-SREVTATYTVPVPPNTRMKVTLLATKAKCDIPFSYTQRDLLRNGR 436

Query: 121 QVITDCDDGLYSEVNTYNFDYQNKPLP 148
           +V T+ DDGLY+ V T+ FDYQNKPLP
Sbjct: 437 RVETEYDDGLYTGVYTFKFDYQNKPLP 462

[Close]
BLAST of Csa6G083550 vs. TrEMBL
Match: A0A0A0KD53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083030 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.4e-41
Identity = 90/147 (61.22%), Postives = 109/147 (74.15%), Query Frame = 1 

Query: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSIKAGIPEIAEFGIELNY 60
           MAT+ A N    E  MAVSLKY+ E SK WESS+  G G   SIKAGIPEI +  I+++Y
Sbjct: 127 MATEEAINSSSKETVMAVSLKYLEEKSKTWESSLTVGVGIETSIKAGIPEILDTEIKVSY 186

Query: 61  NEERSHTWGQTITEYMREVMATYTLNVPPMTRRKVTLSATKAKCDVLFLYTQRDVLVDGR 120
           N E ++TWG+TI+E  REV ATYT+ VPP TR KVTL ATKAKCD+ F YTQRD+L +GR
Sbjct: 187 NFEANYTWGETISE-SREVTATYTVPVPPNTRMKVTLLATKAKCDIPFSYTQRDLLRNGR 246

Query: 121 QVITDCDDGLYSEVNTYNFDYQNKPLP 148
           +V  +CDDGLY+ V T+ FDYQNKP P
Sbjct: 247 RVEIECDDGLYTGVYTFKFDYQNKPYP 272

[Close]
BLAST of Csa6G083550 vs. TrEMBL
Match: A0A0A0KA07_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083530 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.3e-36
Identity = 82/147 (55.78%), Postives = 104/147 (70.75%), Query Frame = 1 

Query: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSIKAGIPEIAEFGIELNY 60
           MAT+ A N    E  MAVSLKY+ E ++ WESS+  G     SIKAGIPEI E  I++ Y
Sbjct: 317 MATEEAINSSSKETVMAVSLKYLEEKTRSWESSLTIGAVIEASIKAGIPEILESEIKVTY 376

Query: 61  NEERSHTWGQTITEYMREVMATYTLNVPPMTRRKVTLSATKAKCDVLFLYTQRDVLVDGR 120
           + E ++TWG+T+ E  REV +TYT+ VPP  + KV+L ATKAKCD+ F YTQRD+L +G+
Sbjct: 377 SFEGNYTWGETLQE-TREVTSTYTVTVPPNKKMKVSLLATKAKCDIPFSYTQRDLLQNGK 436

Query: 121 QVITDCDDGLYSEVNTYNFDYQNKPLP 148
           +V  DCDDGLY+ V T  FDYQNK LP
Sbjct: 437 KVEIDCDDGLYTGVYTIKFDYQNKTLP 462

[Close]
BLAST of Csa6G083550 vs. NCBI nr
Match: gi|700191116|gb|KGN46320.1| (hypothetical protein Csa_6G083550 [Cucumis sativus])

HSP 1 Score: 305.4 bits (781), Expect = 5.3e-80
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSIKAGIPEIAEFGIELNY 60
           MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSIKAGIPEIAEFGIELNY
Sbjct: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSIKAGIPEIAEFGIELNY 60

Query: 61  NEERSHTWGQTITEYMREVMATYTLNVPPMTRRKVTLSATKAKCDVLFLYTQRDVLVDGR 120
           NEERSHTWGQTITEYMREVMATYTLNVPPMTRRKVTLSATKAKCDVLFLYTQRDVLVDGR
Sbjct: 61  NEERSHTWGQTITEYMREVMATYTLNVPPMTRRKVTLSATKAKCDVLFLYTQRDVLVDGR 120

Query: 121 QVITDCDDGLYSEVNTYNFDYQNKPLPFS 150
           QVITDCDDGLYSEVNTYNFDYQNKPLPFS
Sbjct: 121 QVITDCDDGLYSEVNTYNFDYQNKPLPFS 149

[Close]
BLAST of Csa6G083550 vs. NCBI nr
Match: gi|449445680|ref|XP_004140600.1| (PREDICTED: uncharacterized protein LOC101212789 [Cucumis sativus])

HSP 1 Score: 228.0 bits (580), Expect = 1.1e-56
Identity = 107/149 (71.81%), Postives = 127/149 (85.23%), Query Frame = 1 

Query: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSIKAGIPEIAEFGIELNY 60
           MAT++A+NGG  EASMA+SLKYVVE SKCWESS+   WG + S+KAG+PEI E G+E+N+
Sbjct: 317 MATEHATNGGTKEASMALSLKYVVEASKCWESSVSTAWGVVASVKAGVPEIFEVGVEVNH 376

Query: 61  NEERSHTWGQTITEYMREVMATYTLNVPPMTRRKVTLSATKAKCDVLFLYTQRDVLVDGR 120
           NEE+S +WG+TIT+ MREVMATYT+NVPPMT+ KVTL ATKAKCDV F YTQRDVL DG 
Sbjct: 377 NEEKSRSWGETITD-MREVMATYTVNVPPMTKMKVTLIATKAKCDVPFSYTQRDVLRDGT 436

Query: 121 QVITDCDDGLYSEVNTYNFDYQNKPLPFS 150
            VI DCDDGLY+ V+TYNFDY+NKP PFS
Sbjct: 437 HVIKDCDDGLYTGVHTYNFDYKNKPFPFS 464

[Close]
BLAST of Csa6G083550 vs. NCBI nr
Match: gi|778722035|ref|XP_004145086.2| (PREDICTED: uncharacterized protein LOC105434387 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 6.3e-41
Identity = 91/147 (61.90%), Postives = 110/147 (74.83%), Query Frame = 1 

Query: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSIKAGIPEIAEFGIELNY 60
           MAT+ A N    E  MAVSL+Y+ E SK WESS+  G G   SIKAGIPEI +  I+++Y
Sbjct: 317 MATEEAVNSSSKETVMAVSLRYLEEKSKTWESSLTVGVGIETSIKAGIPEILDTEIKVSY 376

Query: 61  NEERSHTWGQTITEYMREVMATYTLNVPPMTRRKVTLSATKAKCDVLFLYTQRDVLVDGR 120
           N E S+TWG+TI+E  REV ATYT+ VPP TR KVTL ATKAKCD+ F YTQRD+L +GR
Sbjct: 377 NFEASYTWGETISE-SREVTATYTVPVPPNTRMKVTLLATKAKCDIPFSYTQRDLLRNGR 436

Query: 121 QVITDCDDGLYSEVNTYNFDYQNKPLP 148
           +V T+ DDGLY+ V T+ FDYQNKPLP
Sbjct: 437 RVETEYDDGLYTGVYTFKFDYQNKPLP 462

[Close]
BLAST of Csa6G083550 vs. NCBI nr
Match: gi|778711447|ref|XP_011656733.1| (PREDICTED: uncharacterized protein LOC101208849 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 6.3e-41
Identity = 90/147 (61.22%), Postives = 109/147 (74.15%), Query Frame = 1 

Query: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSIKAGIPEIAEFGIELNY 60
           MAT+ A N    E  MAVSLKY+ E SK WESS+  G G   SIKAGIPEI +  I+++Y
Sbjct: 317 MATEEAINSSSKETVMAVSLKYLEEKSKTWESSLTVGVGIETSIKAGIPEILDTEIKVSY 376

Query: 61  NEERSHTWGQTITEYMREVMATYTLNVPPMTRRKVTLSATKAKCDVLFLYTQRDVLVDGR 120
           N E ++TWG+TI+E  REV ATYT+ VPP TR KVTL ATKAKCD+ F YTQRD+L +GR
Sbjct: 377 NFEANYTWGETISE-SREVTATYTVPVPPNTRMKVTLLATKAKCDIPFSYTQRDLLRNGR 436

Query: 121 QVITDCDDGLYSEVNTYNFDYQNKPLP 148
           +V  +CDDGLY+ V T+ FDYQNKP P
Sbjct: 437 RVEIECDDGLYTGVYTFKFDYQNKPYP 462

[Close]
BLAST of Csa6G083550 vs. NCBI nr
Match: gi|700191113|gb|KGN46317.1| (hypothetical protein Csa_6G083030 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 6.3e-41
Identity = 90/147 (61.22%), Postives = 109/147 (74.15%), Query Frame = 1 

Query: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSIKAGIPEIAEFGIELNY 60
           MAT+ A N    E  MAVSLKY+ E SK WESS+  G G   SIKAGIPEI +  I+++Y
Sbjct: 127 MATEEAINSSSKETVMAVSLKYLEEKSKTWESSLTVGVGIETSIKAGIPEILDTEIKVSY 186

Query: 61  NEERSHTWGQTITEYMREVMATYTLNVPPMTRRKVTLSATKAKCDVLFLYTQRDVLVDGR 120
           N E ++TWG+TI+E  REV ATYT+ VPP TR KVTL ATKAKCD+ F YTQRD+L +GR
Sbjct: 187 NFEANYTWGETISE-SREVTATYTVPVPPNTRMKVTLLATKAKCDIPFSYTQRDLLRNGR 246

Query: 121 QVITDCDDGLYSEVNTYNFDYQNKPLP 148
           +V  +CDDGLY+ V T+ FDYQNKP P
Sbjct: 247 RVEIECDDGLYTGVYTFKFDYQNKPYP 272

The following BLAST results are available for this feature:
BLAST of Csa6G083550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K975_CUCSA3.7e-80100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083550 PE=4 SV=1[more]
A0A0A0KEW7_CUCSA7.5e-5771.81Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083560 PE=4 SV=1[more]
A0A0A0KEW1_CUCSA4.4e-4161.90Uncharacterized protein OS=Cucumis sativus GN=Csa_6G082530 PE=4 SV=1[more]
A0A0A0KD53_CUCSA4.4e-4161.22Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083030 PE=4 SV=1[more]
A0A0A0KA07_CUCSA4.3e-3655.78Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083530 PE=4 SV=1[more]
BLAST of Csa6G083550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191116|gb|KGN46320.1|5.3e-80100.00hypothetical protein Csa_6G083550 [Cucumis sativus][more]
gi|449445680|ref|XP_004140600.1|1.1e-5671.81PREDICTED: uncharacterized protein LOC101212789 [Cucumis sativus][more]
gi|778722035|ref|XP_004145086.2|6.3e-4161.90PREDICTED: uncharacterized protein LOC105434387 [Cucumis sativus][more]
gi|778711447|ref|XP_011656733.1|6.3e-4161.22PREDICTED: uncharacterized protein LOC101208849 [Cucumis sativus][more]
gi|700191113|gb|KGN46317.1|6.3e-4161.22hypothetical protein Csa_6G083030 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023307Aerolysin-like toxin, beta complex domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G083550.1Csa6G083550.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023307Aerolysin-like toxin, beta complex domainGENE3DG3DSA:2.170.15.10coord: 2..143
score: 2.8
NoneNo IPR availablePANTHERPTHR39244FAMILY NOT NAMEDcoord: 1..149
score: 3.7
NoneNo IPR availableunknownSSF56973Aerolisin/ETX pore-forming domaincoord: 24..142
score: 3.53

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G083550CSPI06G06540Wild cucumber (PI 183967)cpicuB314
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G083550Watermelon (97103) v2cuwmbB468
Csa6G083550Wax gourdcuwgoB544
Csa6G083550Cucumber (Gy14) v1cgycuB490
Csa6G083550Cucumber (Gy14) v1cgycuB511
Csa6G083550Cucurbita maxima (Rimu)cmacuB374
Csa6G083550Cucurbita maxima (Rimu)cmacuB908
Csa6G083550Cucurbita moschata (Rifu)cmocuB363
Csa6G083550Cucurbita moschata (Rifu)cmocuB894
Csa6G083550Melon (DHL92) v3.5.1cumeB442
Csa6G083550Watermelon (Charleston Gray)cuwcgB476
Csa6G083550Watermelon (97103) v1cuwmB537
Csa6G083550Cucurbita pepo (Zucchini)cpecuB327
Csa6G083550Bottle gourd (USVL1VR-Ls)culsiB402
Csa6G083550Cucumber (Gy14) v2cgybcuB282
Csa6G083550Melon (DHL92) v3.6.1cumedB422
Csa6G083550Silver-seed gourdcarcuB0091
Csa6G083550Silver-seed gourdcarcuB0786