CSPI06G06540 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G06540
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 5679262 .. 5679768 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACCAAGTATGCTAGCAATGGCGGCATGAGCGAGGCATCTATGGCAGTAAGTTTGAAGTACGTAGTTGAAACTTCTAAATGTTGGGAATCTTCAATCATTGCGGGTTGGGGTGCGATGGTGTCCGTTAAAGCCGAGATTCCTGAAATTGCAGAATTTGGGATTGAACTCAACTATAATGAAGAGAGAAGTCACACTTGGGGACAAACCATTACAGAGTACATGAGAGAAGTGATGGCAACATATACTGTTAATGTACCACCAATGACAAGGAGGAAAGTGACTCTTAGTGCAACTAAGGCCAAATGCGATGTTCTGTTTTCGTACACGCAGCGAGACGTTCTCGTCGATGGAAGACAAGTTATTACAGACTGTGATGATGGTCTTTACTCTGAAGTTAATACCTACAACTTTGATTACCAGAACAAGCCTCTTCCACATGAACACCCATGTGATCATCTTAATGAATCAAACCTTCCTGCCCAACAACCATATTTAATTTAA

mRNA sequence

ATGGCAACCAAGTATGCTAGCAATGGCGGCATGAGCGAGGCATCTATGGCAGTAAGTTTGAAGTACGTAGTTGAAACTTCTAAATGTTGGGAATCTTCAATCATTGCGGGTTGGGGTGCGATGGTGTCCGTTAAAGCCGAGATTCCTGAAATTGCAGAATTTGGGATTGAACTCAACTATAATGAAGAGAGAAGTCACACTTGGGGACAAACCATTACAGAGTACATGAGAGAAGTGATGGCAACATATACTGTTAATGTACCACCAATGACAAGGAGGAAAGTGACTCTTAGTGCAACTAAGGCCAAATGCGATGTTCTGTTTTCGTACACGCAGCGAGACGTTCTCGTCGATGGAAGACAAGTTATTACAGACTGTGATGATGGTCTTTACTCTGAAGTTAATACCTACAACTTTGATTACCAGAACAAGCCTCTTCCACATGAACACCCATGTGATCATCTTAATGAATCAAACCTTCCTGCCCAACAACCATATTTAATTTAA

Coding sequence (CDS)

ATGGCAACCAAGTATGCTAGCAATGGCGGCATGAGCGAGGCATCTATGGCAGTAAGTTTGAAGTACGTAGTTGAAACTTCTAAATGTTGGGAATCTTCAATCATTGCGGGTTGGGGTGCGATGGTGTCCGTTAAAGCCGAGATTCCTGAAATTGCAGAATTTGGGATTGAACTCAACTATAATGAAGAGAGAAGTCACACTTGGGGACAAACCATTACAGAGTACATGAGAGAAGTGATGGCAACATATACTGTTAATGTACCACCAATGACAAGGAGGAAAGTGACTCTTAGTGCAACTAAGGCCAAATGCGATGTTCTGTTTTCGTACACGCAGCGAGACGTTCTCGTCGATGGAAGACAAGTTATTACAGACTGTGATGATGGTCTTTACTCTGAAGTTAATACCTACAACTTTGATTACCAGAACAAGCCTCTTCCACATGAACACCCATGTGATCATCTTAATGAATCAAACCTTCCTGCCCAACAACCATATTTAATTTAA
Homology
[Close]
BLAST of CSPI06G06540 vs. TrEMBL
Match: A0A0A0K975_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083550 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 6.2e-76
Identity = 143/147 (97.28%), Postives = 145/147 (98.64%), Query Frame = 1 

Query: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSVKAEIPEIAEFGIELNY 60
           MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVS+KA IPEIAEFGIELNY
Sbjct: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSIKAGIPEIAEFGIELNY 60

Query: 61  NEERSHTWGQTITEYMREVMATYTVNVPPMTRRKVTLSATKAKCDVLFSYTQRDVLVDGR 120
           NEERSHTWGQTITEYMREVMATYT+NVPPMTRRKVTLSATKAKCDVLF YTQRDVLVDGR
Sbjct: 61  NEERSHTWGQTITEYMREVMATYTLNVPPMTRRKVTLSATKAKCDVLFLYTQRDVLVDGR 120

Query: 121 QVITDCDDGLYSEVNTYNFDYQNKPLP 148
           QVITDCDDGLYSEVNTYNFDYQNKPLP
Sbjct: 121 QVITDCDDGLYSEVNTYNFDYQNKPLP 147

[Close]
BLAST of CSPI06G06540 vs. TrEMBL
Match: A0A0A0KEW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083560 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 6.1e-55
Identity = 107/147 (72.79%), Postives = 125/147 (85.03%), Query Frame = 1 

Query: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSVKAEIPEIAEFGIELNY 60
           MAT++A+NGG  EASMA+SLKYVVE SKCWESS+   WG + SVKA +PEI E G+E+N+
Sbjct: 317 MATEHATNGGTKEASMALSLKYVVEASKCWESSVSTAWGVVASVKAGVPEIFEVGVEVNH 376

Query: 61  NEERSHTWGQTITEYMREVMATYTVNVPPMTRRKVTLSATKAKCDVLFSYTQRDVLVDGR 120
           NEE+S +WG+TIT+ MREVMATYTVNVPPMT+ KVTL ATKAKCDV FSYTQRDVL DG 
Sbjct: 377 NEEKSRSWGETITD-MREVMATYTVNVPPMTKMKVTLIATKAKCDVPFSYTQRDVLRDGT 436

Query: 121 QVITDCDDGLYSEVNTYNFDYQNKPLP 148
            VI DCDDGLY+ V+TYNFDY+NKP P
Sbjct: 437 HVIKDCDDGLYTGVHTYNFDYKNKPFP 462

[Close]
BLAST of CSPI06G06540 vs. TrEMBL
Match: A0A0A0KD53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083030 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 4.2e-40
Identity = 90/147 (61.22%), Postives = 109/147 (74.15%), Query Frame = 1 

Query: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSVKAEIPEIAEFGIELNY 60
           MAT+ A N    E  MAVSLKY+ E SK WESS+  G G   S+KA IPEI +  I+++Y
Sbjct: 127 MATEEAINSSSKETVMAVSLKYLEEKSKTWESSLTVGVGIETSIKAGIPEILDTEIKVSY 186

Query: 61  NEERSHTWGQTITEYMREVMATYTVNVPPMTRRKVTLSATKAKCDVLFSYTQRDVLVDGR 120
           N E ++TWG+TI+E  REV ATYTV VPP TR KVTL ATKAKCD+ FSYTQRD+L +GR
Sbjct: 187 NFEANYTWGETISE-SREVTATYTVPVPPNTRMKVTLLATKAKCDIPFSYTQRDLLRNGR 246

Query: 121 QVITDCDDGLYSEVNTYNFDYQNKPLP 148
           +V  +CDDGLY+ V T+ FDYQNKP P
Sbjct: 247 RVEIECDDGLYTGVYTFKFDYQNKPYP 272

[Close]
BLAST of CSPI06G06540 vs. TrEMBL
Match: A0A0A0KEW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G082530 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 4.2e-40
Identity = 91/147 (61.90%), Postives = 110/147 (74.83%), Query Frame = 1 

Query: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSVKAEIPEIAEFGIELNY 60
           MAT+ A N    E  MAVSL+Y+ E SK WESS+  G G   S+KA IPEI +  I+++Y
Sbjct: 317 MATEEAVNSSSKETVMAVSLRYLEEKSKTWESSLTVGVGIETSIKAGIPEILDTEIKVSY 376

Query: 61  NEERSHTWGQTITEYMREVMATYTVNVPPMTRRKVTLSATKAKCDVLFSYTQRDVLVDGR 120
           N E S+TWG+TI+E  REV ATYTV VPP TR KVTL ATKAKCD+ FSYTQRD+L +GR
Sbjct: 377 NFEASYTWGETISE-SREVTATYTVPVPPNTRMKVTLLATKAKCDIPFSYTQRDLLRNGR 436

Query: 121 QVITDCDDGLYSEVNTYNFDYQNKPLP 148
           +V T+ DDGLY+ V T+ FDYQNKPLP
Sbjct: 437 RVETEYDDGLYTGVYTFKFDYQNKPLP 462

[Close]
BLAST of CSPI06G06540 vs. TrEMBL
Match: A0A0A0KA07_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083530 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.1e-35
Identity = 82/147 (55.78%), Postives = 104/147 (70.75%), Query Frame = 1 

Query: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSVKAEIPEIAEFGIELNY 60
           MAT+ A N    E  MAVSLKY+ E ++ WESS+  G     S+KA IPEI E  I++ Y
Sbjct: 317 MATEEAINSSSKETVMAVSLKYLEEKTRSWESSLTIGAVIEASIKAGIPEILESEIKVTY 376

Query: 61  NEERSHTWGQTITEYMREVMATYTVNVPPMTRRKVTLSATKAKCDVLFSYTQRDVLVDGR 120
           + E ++TWG+T+ E  REV +TYTV VPP  + KV+L ATKAKCD+ FSYTQRD+L +G+
Sbjct: 377 SFEGNYTWGETLQE-TREVTSTYTVTVPPNKKMKVSLLATKAKCDIPFSYTQRDLLQNGK 436

Query: 121 QVITDCDDGLYSEVNTYNFDYQNKPLP 148
           +V  DCDDGLY+ V T  FDYQNK LP
Sbjct: 437 KVEIDCDDGLYTGVYTIKFDYQNKTLP 462

[Close]
BLAST of CSPI06G06540 vs. NCBI nr
Match: gi|700191116|gb|KGN46320.1| (hypothetical protein Csa_6G083550 [Cucumis sativus])

HSP 1 Score: 291.6 bits (745), Expect = 8.9e-76
Identity = 143/147 (97.28%), Postives = 145/147 (98.64%), Query Frame = 1 

Query: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSVKAEIPEIAEFGIELNY 60
           MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVS+KA IPEIAEFGIELNY
Sbjct: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSIKAGIPEIAEFGIELNY 60

Query: 61  NEERSHTWGQTITEYMREVMATYTVNVPPMTRRKVTLSATKAKCDVLFSYTQRDVLVDGR 120
           NEERSHTWGQTITEYMREVMATYT+NVPPMTRRKVTLSATKAKCDVLF YTQRDVLVDGR
Sbjct: 61  NEERSHTWGQTITEYMREVMATYTLNVPPMTRRKVTLSATKAKCDVLFLYTQRDVLVDGR 120

Query: 121 QVITDCDDGLYSEVNTYNFDYQNKPLP 148
           QVITDCDDGLYSEVNTYNFDYQNKPLP
Sbjct: 121 QVITDCDDGLYSEVNTYNFDYQNKPLP 147

[Close]
BLAST of CSPI06G06540 vs. NCBI nr
Match: gi|449445680|ref|XP_004140600.1| (PREDICTED: uncharacterized protein LOC101212789 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 8.7e-55
Identity = 107/147 (72.79%), Postives = 125/147 (85.03%), Query Frame = 1 

Query: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSVKAEIPEIAEFGIELNY 60
           MAT++A+NGG  EASMA+SLKYVVE SKCWESS+   WG + SVKA +PEI E G+E+N+
Sbjct: 317 MATEHATNGGTKEASMALSLKYVVEASKCWESSVSTAWGVVASVKAGVPEIFEVGVEVNH 376

Query: 61  NEERSHTWGQTITEYMREVMATYTVNVPPMTRRKVTLSATKAKCDVLFSYTQRDVLVDGR 120
           NEE+S +WG+TIT+ MREVMATYTVNVPPMT+ KVTL ATKAKCDV FSYTQRDVL DG 
Sbjct: 377 NEEKSRSWGETITD-MREVMATYTVNVPPMTKMKVTLIATKAKCDVPFSYTQRDVLRDGT 436

Query: 121 QVITDCDDGLYSEVNTYNFDYQNKPLP 148
            VI DCDDGLY+ V+TYNFDY+NKP P
Sbjct: 437 HVIKDCDDGLYTGVHTYNFDYKNKPFP 462

[Close]
BLAST of CSPI06G06540 vs. NCBI nr
Match: gi|778722035|ref|XP_004145086.2| (PREDICTED: uncharacterized protein LOC105434387 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 6.0e-40
Identity = 91/147 (61.90%), Postives = 110/147 (74.83%), Query Frame = 1 

Query: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSVKAEIPEIAEFGIELNY 60
           MAT+ A N    E  MAVSL+Y+ E SK WESS+  G G   S+KA IPEI +  I+++Y
Sbjct: 317 MATEEAVNSSSKETVMAVSLRYLEEKSKTWESSLTVGVGIETSIKAGIPEILDTEIKVSY 376

Query: 61  NEERSHTWGQTITEYMREVMATYTVNVPPMTRRKVTLSATKAKCDVLFSYTQRDVLVDGR 120
           N E S+TWG+TI+E  REV ATYTV VPP TR KVTL ATKAKCD+ FSYTQRD+L +GR
Sbjct: 377 NFEASYTWGETISE-SREVTATYTVPVPPNTRMKVTLLATKAKCDIPFSYTQRDLLRNGR 436

Query: 121 QVITDCDDGLYSEVNTYNFDYQNKPLP 148
           +V T+ DDGLY+ V T+ FDYQNKPLP
Sbjct: 437 RVETEYDDGLYTGVYTFKFDYQNKPLP 462

[Close]
BLAST of CSPI06G06540 vs. NCBI nr
Match: gi|778711447|ref|XP_011656733.1| (PREDICTED: uncharacterized protein LOC101208849 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 6.0e-40
Identity = 90/147 (61.22%), Postives = 109/147 (74.15%), Query Frame = 1 

Query: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSVKAEIPEIAEFGIELNY 60
           MAT+ A N    E  MAVSLKY+ E SK WESS+  G G   S+KA IPEI +  I+++Y
Sbjct: 317 MATEEAINSSSKETVMAVSLKYLEEKSKTWESSLTVGVGIETSIKAGIPEILDTEIKVSY 376

Query: 61  NEERSHTWGQTITEYMREVMATYTVNVPPMTRRKVTLSATKAKCDVLFSYTQRDVLVDGR 120
           N E ++TWG+TI+E  REV ATYTV VPP TR KVTL ATKAKCD+ FSYTQRD+L +GR
Sbjct: 377 NFEANYTWGETISE-SREVTATYTVPVPPNTRMKVTLLATKAKCDIPFSYTQRDLLRNGR 436

Query: 121 QVITDCDDGLYSEVNTYNFDYQNKPLP 148
           +V  +CDDGLY+ V T+ FDYQNKP P
Sbjct: 437 RVEIECDDGLYTGVYTFKFDYQNKPYP 462

[Close]
BLAST of CSPI06G06540 vs. NCBI nr
Match: gi|700191113|gb|KGN46317.1| (hypothetical protein Csa_6G083030 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 6.0e-40
Identity = 90/147 (61.22%), Postives = 109/147 (74.15%), Query Frame = 1 

Query: 1   MATKYASNGGMSEASMAVSLKYVVETSKCWESSIIAGWGAMVSVKAEIPEIAEFGIELNY 60
           MAT+ A N    E  MAVSLKY+ E SK WESS+  G G   S+KA IPEI +  I+++Y
Sbjct: 127 MATEEAINSSSKETVMAVSLKYLEEKSKTWESSLTVGVGIETSIKAGIPEILDTEIKVSY 186

Query: 61  NEERSHTWGQTITEYMREVMATYTVNVPPMTRRKVTLSATKAKCDVLFSYTQRDVLVDGR 120
           N E ++TWG+TI+E  REV ATYTV VPP TR KVTL ATKAKCD+ FSYTQRD+L +GR
Sbjct: 187 NFEANYTWGETISE-SREVTATYTVPVPPNTRMKVTLLATKAKCDIPFSYTQRDLLRNGR 246

Query: 121 QVITDCDDGLYSEVNTYNFDYQNKPLP 148
           +V  +CDDGLY+ V T+ FDYQNKP P
Sbjct: 247 RVEIECDDGLYTGVYTFKFDYQNKPYP 272

The following BLAST results are available for this feature:
BLAST of CSPI06G06540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G06540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K975_CUCSA6.2e-7697.28Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083550 PE=4 SV=1[more]
A0A0A0KEW7_CUCSA6.1e-5572.79Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083560 PE=4 SV=1[more]
A0A0A0KD53_CUCSA4.2e-4061.22Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083030 PE=4 SV=1[more]
A0A0A0KEW1_CUCSA4.2e-4061.90Uncharacterized protein OS=Cucumis sativus GN=Csa_6G082530 PE=4 SV=1[more]
A0A0A0KA07_CUCSA4.1e-3555.78Uncharacterized protein OS=Cucumis sativus GN=Csa_6G083530 PE=4 SV=1[more]
BLAST of CSPI06G06540 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G06540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191116|gb|KGN46320.1|8.9e-7697.28hypothetical protein Csa_6G083550 [Cucumis sativus][more]
gi|449445680|ref|XP_004140600.1|8.7e-5572.79PREDICTED: uncharacterized protein LOC101212789 [Cucumis sativus][more]
gi|778722035|ref|XP_004145086.2|6.0e-4061.90PREDICTED: uncharacterized protein LOC105434387 [Cucumis sativus][more]
gi|778711447|ref|XP_011656733.1|6.0e-4061.22PREDICTED: uncharacterized protein LOC101208849 [Cucumis sativus][more]
gi|700191113|gb|KGN46317.1|6.0e-4061.22hypothetical protein Csa_6G083030 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004991Aerolysin-like
IPR023307Aerolysin-like toxin, beta complex domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009405 pathogenesis
cellular_component GO:0005575 cellular_component
cellular_component GO:0005576 extracellular region
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G06540.1CSPI06G06540.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004991Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2PFAMPF03318ETX_MTX2coord: 38..104
score: 3.
IPR023307Aerolysin-like toxin, beta complex domainGENE3DG3DSA:2.170.15.10coord: 2..143
score: 3.4
NoneNo IPR availablePANTHERPTHR39244FAMILY NOT NAMEDcoord: 1..149
score: 1.2
NoneNo IPR availablePANTHERPTHR39244:SF1SUBFAMILY NOT NAMEDcoord: 1..149
score: 1.2
NoneNo IPR availableunknownSSF56973Aerolisin/ETX pore-forming domaincoord: 24..144
score: 2.88

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G06540Csa6G083550Cucumber (Chinese Long) v2cpicuB314
CSPI06G06540Cucsa.348520Cucumber (Gy14) v1cgycpiB517
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G06540Cucurbita moschata (Rifu)cmocpiB367
CSPI06G06540Cucurbita moschata (Rifu)cmocpiB907
CSPI06G06540Melon (DHL92) v3.5.1cpimeB433
CSPI06G06540Watermelon (Charleston Gray)cpiwcgB503
CSPI06G06540Watermelon (97103) v1cpiwmB556
CSPI06G06540Cucurbita pepo (Zucchini)cpecpiB328
CSPI06G06540Bottle gourd (USVL1VR-Ls)cpilsiB404
CSPI06G06540Melon (DHL92) v3.6.1cpimedB431
CSPI06G06540Cucumber (Gy14) v2cgybcpiB288
CSPI06G06540Silver-seed gourdcarcpiB0095
CSPI06G06540Silver-seed gourdcarcpiB0804
CSPI06G06540Cucumber (Chinese Long) v3cpicucB364
CSPI06G06540Watermelon (97103) v2cpiwmbB495
CSPI06G06540Wax gourdcpiwgoB548
CSPI06G06540Cucumber (Gy14) v1cgycpiB540
CSPI06G06540Cucurbita maxima (Rimu)cmacpiB379
CSPI06G06540Cucurbita maxima (Rimu)cmacpiB928