Csa6G079230 (gene) Cucumber (Chinese Long) v2

NameCsa6G079230
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptioncDNA, clone: J075191E10, full insert sequence
LocationChr6 : 5392416 .. 5392708 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCAAGGCAGAAAGCGGTGGCGACACTGCTTAATCTAATTAGAACCCTTAAAAACGATCGCCGGAAGCCTGGTTTCAGCCAGCCTCTTCCGTCGTTGAGACGTGCCTTTTCACTTTACGATCAGATCAATCTCATCGACAATGTCCCTGAAGATCAGCTTCGTTTTCAACGGTACTGCCCTAACTTCTCCTTTTTGTCTTTTGCATCGATTTCTTTCCTCAATTTTATATCTTTGACTCTTTTATGCGGGGATTTAAGGTATACTGAGACAGGGTTCCCTGTGAATAG

mRNA sequence

ATGGCGGCAAGGCAGAAAGCGGTGGCGACACTGCTTAATCTAATTAGAACCCTTAAAAACGATCGCCGGAAGCCTGGTTTCAGCCAGCCTCTTCCGTCGTTGAGACGTGCCTTTTCACTTTACGATCAGATCAATCTCATCGACAATGTCCCTGAAGATCAGCTTCGTTTTCAACGGGTTCCCTGTGAATAG

Coding sequence (CDS)

ATGGCGGCAAGGCAGAAAGCGGTGGCGACACTGCTTAATCTAATTAGAACCCTTAAAAACGATCGCCGGAAGCCTGGTTTCAGCCAGCCTCTTCCGTCGTTGAGACGTGCCTTTTCACTTTACGATCAGATCAATCTCATCGACAATGTCCCTGAAGATCAGCTTCGTTTTCAACGGGTTCCCTGTGAATAG

Protein sequence

MAARQKAVATLLNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRVPCE*
BLAST of Csa6G079230 vs. TrEMBL
Match: A0A0A0K9W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G079230 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 4.5e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1

Query: 1  MAARQKAVATLLNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRV 60
          MAARQKAVATLLNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRV
Sbjct: 1  MAARQKAVATLLNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRV 60

Query: 61 PCE 64
          PCE
Sbjct: 61 PCE 63

BLAST of Csa6G079230 vs. TrEMBL
Match: V4VZ28_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022551mg PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.4e-14
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 1

Query: 1  MAARQKAVATLLNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQ 59
          MA RQ+AV TL NL+R+L+    K   +QPLPSLRRAFSLYDQINLIDNVPEDQLRFQ
Sbjct: 1  MAVRQRAVTTLPNLMRSLRKGSPKAAPNQPLPSLRRAFSLYDQINLIDNVPEDQLRFQ 58

BLAST of Csa6G079230 vs. TrEMBL
Match: A0A067H377_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030786mg PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.4e-14
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 1

Query: 1  MAARQKAVATLLNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQ 59
          MA RQ+AV TL NL+R+L+    K   +QPLPSLRRAFSLYDQINLIDNVPEDQLRFQ
Sbjct: 1  MAVRQRAVTTLPNLMRSLRKGSPKAAPNQPLPSLRRAFSLYDQINLIDNVPEDQLRFQ 58

BLAST of Csa6G079230 vs. TrEMBL
Match: A0A061FJK1_THECC (NADH dehydrogenase 1 alpha subcomplex assembly factor 3 isoform 1 OS=Theobroma cacao GN=TCM_042340 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.8e-13
Identity = 43/58 (74.14%), Postives = 46/58 (79.31%), Query Frame = 1

Query: 1  MAARQKAVATLLNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQ 59
          MAAR +AV TL  LIR+L+ D       QPLPSLRRAFSLYDQINLIDNVPEDQLRFQ
Sbjct: 1  MAARGRAVETLPKLIRSLRKDSPSSTRRQPLPSLRRAFSLYDQINLIDNVPEDQLRFQ 58

BLAST of Csa6G079230 vs. TrEMBL
Match: A0A061FKC7_THECC (NADH dehydrogenase 1 alpha subcomplex assembly factor 3 isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_042340 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.8e-13
Identity = 43/58 (74.14%), Postives = 46/58 (79.31%), Query Frame = 1

Query: 1  MAARQKAVATLLNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQ 59
          MAAR +AV TL  LIR+L+ D       QPLPSLRRAFSLYDQINLIDNVPEDQLRFQ
Sbjct: 1  MAARGRAVETLPKLIRSLRKDSPSSTRRQPLPSLRRAFSLYDQINLIDNVPEDQLRFQ 58

BLAST of Csa6G079230 vs. TAIR10
Match: AT3G60150.1 (AT3G60150.1 Protein of unknown function (DUF498/DUF598))

HSP 1 Score: 77.4 bits (189), Expect = 3.5e-15
Identity = 42/58 (72.41%), Postives = 46/58 (79.31%), Query Frame = 1

Query: 1  MAARQKAVATLLNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQ 59
          MA RQKA+ATL  LI++++N+  K   S  LPSLRRAFSLYDQINLIDNVPEDQLRFQ
Sbjct: 1  MAVRQKAMATLPKLIQSMRNEVTKQP-SLVLPSLRRAFSLYDQINLIDNVPEDQLRFQ 57

BLAST of Csa6G079230 vs. TAIR10
Match: AT2G44525.1 (AT2G44525.1 Protein of unknown function (DUF498/DUF598))

HSP 1 Score: 71.6 bits (174), Expect = 1.9e-13
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 1

Query: 1  MAARQKAVATLLNLIRTLKNDRRKPGFSQP-LPSLRRAFSLYDQINLIDNVPEDQLRFQ 59
          MA R K++ATL  LI++++ +   P  S P LPSLRRAFSLYDQINLIDNVPEDQLRFQ
Sbjct: 1  MAMRLKSMATLPKLIQSMRKE--VPKHSNPVLPSLRRAFSLYDQINLIDNVPEDQLRFQ 57

BLAST of Csa6G079230 vs. NCBI nr
Match: gi|700191074|gb|KGN46278.1| (hypothetical protein Csa_6G079230 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 6.5e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1

Query: 1  MAARQKAVATLLNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRV 60
          MAARQKAVATLLNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRV
Sbjct: 1  MAARQKAVATLLNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRV 60

Query: 61 PCE 64
          PCE
Sbjct: 61 PCE 63

BLAST of Csa6G079230 vs. NCBI nr
Match: gi|659120205|ref|XP_008460070.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 112.1 bits (279), Expect = 3.7e-22
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 1

Query: 1  MAARQKAVATLLNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQR 60
          MAARQKAVATL +LIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVP+DQLRFQR
Sbjct: 1  MAARQKAVATLPSLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPKDQLRFQR 59

BLAST of Csa6G079230 vs. NCBI nr
Match: gi|1009110353|ref|XP_015895139.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 87.4 bits (215), Expect = 9.7e-15
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 1

Query: 1  MAARQKAVATLLNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQR 60
          MA R++AVATL  LIR+L+ +  KP F + LPSLRRAFSLYDQINLIDNVPEDQLRFQR
Sbjct: 1  MAMRERAVATLPKLIRSLRKEPPKPTFQKRLPSLRRAFSLYDQINLIDNVPEDQLRFQR 59

BLAST of Csa6G079230 vs. NCBI nr
Match: gi|985429169|ref|XP_015383687.1| (PREDICTED: uncharacterized protein LOC102631083 isoform X4 [Citrus sinensis])

HSP 1 Score: 85.1 bits (209), Expect = 4.8e-14
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 1

Query: 1  MAARQKAVATLLNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQ 59
          MA RQ+AV TL NL+R+L+    K   +QPLPSLRRAFSLYDQINLIDNVPEDQLRFQ
Sbjct: 1  MAVRQRAVTTLPNLMRSLRKGSPKAAPNQPLPSLRRAFSLYDQINLIDNVPEDQLRFQ 58

BLAST of Csa6G079230 vs. NCBI nr
Match: gi|567906040|ref|XP_006445508.1| (hypothetical protein CICLE_v10022551mg [Citrus clementina])

HSP 1 Score: 85.1 bits (209), Expect = 4.8e-14
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 1

Query: 1  MAARQKAVATLLNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQ 59
          MA RQ+AV TL NL+R+L+    K   +QPLPSLRRAFSLYDQINLIDNVPEDQLRFQ
Sbjct: 1  MAVRQRAVTTLPNLMRSLRKGSPKAAPNQPLPSLRRAFSLYDQINLIDNVPEDQLRFQ 58

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K9W3_CUCSA4.5e-27100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G079230 PE=4 SV=1[more]
V4VZ28_9ROSI3.4e-1474.14Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022551mg PE=4 SV=1[more]
A0A067H377_CITSI3.4e-1474.14Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030786mg PE=4 SV=1[more]
A0A061FJK1_THECC2.8e-1374.14NADH dehydrogenase 1 alpha subcomplex assembly factor 3 isoform 1 OS=Theobroma c... [more]
A0A061FKC7_THECC2.8e-1374.14NADH dehydrogenase 1 alpha subcomplex assembly factor 3 isoform 2 (Fragment) OS=... [more]
Match NameE-valueIdentityDescription
AT3G60150.13.5e-1572.41 Protein of unknown function (DUF498/DUF598)[more]
AT2G44525.11.9e-1367.80 Protein of unknown function (DUF498/DUF598)[more]
Match NameE-valueIdentityDescription
gi|700191074|gb|KGN46278.1|6.5e-27100.00hypothetical protein Csa_6G079230 [Cucumis sativus][more]
gi|659120205|ref|XP_008460070.1|3.7e-2294.92PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|1009110353|ref|XP_015895139.1|9.7e-1574.58PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|985429169|ref|XP_015383687.1|4.8e-1474.14PREDICTED: uncharacterized protein LOC102631083 isoform X4 [Citrus sinensis][more]
gi|567906040|ref|XP_006445508.1|4.8e-1474.14hypothetical protein CICLE_v10022551mg [Citrus clementina][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU144037cucumber EST collection version 3.0transcribed_cluster
CU144239cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G079230.1Csa6G079230.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU144239CU144239transcribed_cluster
CU144037CU144037transcribed_cluster


The following gene(s) are paralogous to this gene:

None