CSPI06G06200 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G06200
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	NADH dehydrogenase 1 alpha subcomplex assembly factor 3-like protein
Location	Chr6 : 5453941 .. 5454536 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAAAATGCAATTATATCAAAGTTGATGTCCTAAAGAAGAAAAGTAAAAGAGAAAAAGGGATTTGGGGGCGAAACTCCGGGACGGGGACAGAGGGCCTGAGAAAAATGGCGGCAAGGCAGAAAGCGGTGGCGACGCTGCCTAATCTAATTAGAACCCTTAAAAATGATCGCCGGAAGCCTGGTTTCAGCCAGCCTCTTCCGTCGTTGAGACGTGCCTTTTCACTTTACGATCAGATCAATCTCATCGACAATGTCCCTGAAGATCAGCTTCGTTTTCAACGGTACTGCCCTAACTTCTCCTTTTTGTCTTTTGCATCGATTTCTTTCCTCAATTTTATATCTTTGACTCTTTTATGCGGGGATTTAAGGTATACTGAGACGGGGTTCACTGTGAATGGAGTGGATTATGAGGGCAGCTTGCTTTGTGTTGGGAATTTGTTGATGTCTTGGACTCCTAAGAAATTTTCGGAAATTACGTCTGATAGGTTTGCTTTGCATTTCTTGTTCCTAACTTACAATACTCAATTTACTTCCTTTGTTCTTTTTGGTGATTGAAAATGAATGAAATGATGGAAGTTCACGTGGGTGTTCAAAC

mRNA sequence

ATGGCGGCAAGGCAGAAAGCGGTGGCGACGCTGCCTAATCTAATTAGAACCCTTAAAAATGATCGCCGGAAGCCTGGTTTCAGCCAGCCTCTTCCGTCGTTGAGACGTGCCTTTTCACTTTACGATCAGATCAATCTCATCGACAATGTCCCTGAAGATCAGCTTCGTTTTCAACGGTATACTGAGACGGGGTTCACTGTGAATGGAGTGGATTATGAGGGCAGCTTGCTTTGTGTTGGGAATTTGTTGATGTCTTGGACTCCTAAGAAATTTTCGGAAATTACGTCTGATAGGTTTGCTTTGCATTTCTTGTTCCTAACTTACAATACTCAATTTACTTCCTTTGTTCTTTTTGGTGATTGA

Coding sequence (CDS)

ATGGCGGCAAGGCAGAAAGCGGTGGCGACGCTGCCTAATCTAATTAGAACCCTTAAAAATGATCGCCGGAAGCCTGGTTTCAGCCAGCCTCTTCCGTCGTTGAGACGTGCCTTTTCACTTTACGATCAGATCAATCTCATCGACAATGTCCCTGAAGATCAGCTTCGTTTTCAACGGTATACTGAGACGGGGTTCACTGTGAATGGAGTGGATTATGAGGGCAGCTTGCTTTGTGTTGGGAATTTGTTGATGTCTTGGACTCCTAAGAAATTTTCGGAAATTACGTCTGATAGGTTTGCTTTGCATTTCTTGTTCCTAACTTACAATACTCAATTTACTTCCTTTGTTCTTTTTGGTGATTGA

Homology

[Close]

BLAST of CSPI06G06200 vs. TrEMBL
Match: V4VZ28_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022551mg PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.6e-36
Identity = 76/95 (80.00%), Postives = 84/95 (88.42%), Query Frame = 1


Query: 1  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRY 60
          MA RQ+AV TLPNL+R+L+    K   +QPLPSLRRAFSLYDQINLIDNVPEDQLRFQ Y
Sbjct: 1  MAVRQRAVTTLPNLMRSLRKGSPKAAPNQPLPSLRRAFSLYDQINLIDNVPEDQLRFQGY 60

Query: 61 TETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEIT 96
          T+TGFTVNGV YEGSLLC+GNLL+SWTPKKFSEIT
Sbjct: 61 TDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEIT 95

[Close]

BLAST of CSPI06G06200 vs. TrEMBL
Match: A0A067H377_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030786mg PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.6e-36
Identity = 76/95 (80.00%), Postives = 84/95 (88.42%), Query Frame = 1


Query: 1  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRY 60
          MA RQ+AV TLPNL+R+L+    K   +QPLPSLRRAFSLYDQINLIDNVPEDQLRFQ Y
Sbjct: 1  MAVRQRAVTTLPNLMRSLRKGSPKAAPNQPLPSLRRAFSLYDQINLIDNVPEDQLRFQGY 60

Query: 61 TETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEIT 96
          T+TGFTVNGV YEGSLLC+GNLL+SWTPKKFSEIT
Sbjct: 61 TDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEIT 95

[Close]

BLAST of CSPI06G06200 vs. TrEMBL
Match: W9R8M0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015613 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 7.7e-36
Identity = 77/104 (74.04%), Postives = 87/104 (83.65%), Query Frame = 1


Query: 1   MAARQKAVATLPNLIRTLKNDRRKP---GFSQPLPSLRRAFSLYDQINLIDNVPEDQLRF 60
           MA  ++AVATLP LIR+L+    KP    + Q LPSLRRAFSLYDQINLIDNVP+DQLRF
Sbjct: 1   MAGGERAVATLPKLIRSLRKQPPKPKTASYQQTLPSLRRAFSLYDQINLIDNVPDDQLRF 60

Query: 61  QRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFAL 102
           QRYT+TGFTVNGV+YEGSLLCVGNLLMSW PKKFSEIT D  ++
Sbjct: 61  QRYTDTGFTVNGVEYEGSLLCVGNLLMSWAPKKFSEITPDSLSI 104

[Close]

BLAST of CSPI06G06200 vs. TrEMBL
Match: W9RFV5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023877 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 7.7e-36
Identity = 77/104 (74.04%), Postives = 87/104 (83.65%), Query Frame = 1


Query: 1   MAARQKAVATLPNLIRTLKNDRRKP---GFSQPLPSLRRAFSLYDQINLIDNVPEDQLRF 60
           MA  ++AVATLP LIR+L+    KP    + Q LPSLRRAFSLYDQINLIDNVP+DQLRF
Sbjct: 1   MAGGERAVATLPKLIRSLRKQPPKPKTASYQQTLPSLRRAFSLYDQINLIDNVPDDQLRF 60

Query: 61  QRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFAL 102
           QRYT+TGFTVNGV+YEGSLLCVGNLLMSW PKKFSEIT D  ++
Sbjct: 61  QRYTDTGFTVNGVEYEGSLLCVGNLLMSWAPKKFSEITPDSLSI 104

[Close]

BLAST of CSPI06G06200 vs. TrEMBL
Match: I1JMH1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G100700 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-34
Identity = 76/102 (74.51%), Postives = 84/102 (82.35%), Query Frame = 1


Query: 1   MAARQKAVATLPNLIRTLKNDRRKP---GFSQPLPSLRRAFSLYDQINLIDNVPEDQLRF 60
           MA RQ+AV+ LP L+RTL+ +  KP        LPSLRRAFSLYDQINLID VPEDQLRF
Sbjct: 1   MAVRQRAVSALPTLLRTLRKEPLKPRNHAHVNALPSLRRAFSLYDQINLIDQVPEDQLRF 60

Query: 61  QRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRF 100
           Q Y +TGFTVNGV+YEGSLLCVGNLLMSW PKKFSEIT+DRF
Sbjct: 61  QGYNDTGFTVNGVEYEGSLLCVGNLLMSWKPKKFSEITADRF 102

[Close]

BLAST of CSPI06G06200 vs. TAIR10
Match: AT3G60150.1 (AT3G60150.1 Protein of unknown function (DUF498/DUF598))

HSP 1 Score: 146.0 bits (367), Expect = 1.5e-35
Identity = 72/101 (71.29%), Postives = 85/101 (84.16%), Query Frame = 1


Query: 1   MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRY 60
           MA RQKA+ATLP LI++++N+  K   S  LPSLRRAFSLYDQINLIDNVPEDQLRFQ +
Sbjct: 1   MAVRQKAMATLPKLIQSMRNEVTKQP-SLVLPSLRRAFSLYDQINLIDNVPEDQLRFQEF 60

Query: 61  TETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFAL 102
            ET FTVNGV YEGSLLCVGNLLMSW+P+ FS+IT+D  ++
Sbjct: 61  DETSFTVNGVKYEGSLLCVGNLLMSWSPRYFSDITTDSLSI 100

[Close]

BLAST of CSPI06G06200 vs. TAIR10
Match: AT2G44525.1 (AT2G44525.1 Protein of unknown function (DUF498/DUF598))

HSP 1 Score: 143.7 bits (361), Expect = 7.6e-35
Identity = 71/102 (69.61%), Postives = 85/102 (83.33%), Query Frame = 1


Query: 1   MAARQKAVATLPNLIRTLKNDRRKPGFSQP-LPSLRRAFSLYDQINLIDNVPEDQLRFQR 60
           MA R K++ATLP LI++++ +   P  S P LPSLRRAFSLYDQINLIDNVPEDQLRFQ 
Sbjct: 1   MAMRLKSMATLPKLIQSMRKE--VPKHSNPVLPSLRRAFSLYDQINLIDNVPEDQLRFQE 60

Query: 61  YTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFAL 102
           + +T FTVNGV YEGSLLCVGNLLMSW+P+KFSEIT+D  ++
Sbjct: 61  FNDTSFTVNGVKYEGSLLCVGNLLMSWSPRKFSEITTDSLSI 100

[Close]

BLAST of CSPI06G06200 vs. NCBI nr
Match: gi|659120205|ref|XP_008460070.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 193.7 bits (491), Expect = 1.8e-46
Identity = 93/101 (92.08%), Postives = 98/101 (97.03%), Query Frame = 1


Query: 1   MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRY 60
           MAARQKAVATLP+LIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVP+DQLRFQRY
Sbjct: 1   MAARQKAVATLPSLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPKDQLRFQRY 60

Query: 61  TETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFAL 102
           TETGFTVNGVDYEGSLLCVGNLLMSW+PKKFSEIT D  ++
Sbjct: 61  TETGFTVNGVDYEGSLLCVGNLLMSWSPKKFSEITPDSLSI 101

[Close]

BLAST of CSPI06G06200 vs. NCBI nr
Match: gi|1009110353|ref|XP_015895139.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 167.5 bits (423), Expect = 1.4e-38
Identity = 80/101 (79.21%), Postives = 89/101 (88.12%), Query Frame = 1


Query: 1   MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRY 60
           MA R++AVATLP LIR+L+ +  KP F + LPSLRRAFSLYDQINLIDNVPEDQLRFQRY
Sbjct: 1   MAMRERAVATLPKLIRSLRKEPPKPTFQKRLPSLRRAFSLYDQINLIDNVPEDQLRFQRY 60

Query: 61  TETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSDRFAL 102
           TETGFTVNGVDYEGSLLCVGNLLMSW PKKFS+IT D  ++
Sbjct: 61  TETGFTVNGVDYEGSLLCVGNLLMSWAPKKFSDITPDSLSM 101

[Close]

BLAST of CSPI06G06200 vs. NCBI nr
Match: gi|985429169|ref|XP_015383687.1| (PREDICTED: uncharacterized protein LOC102631083 isoform X4 [Citrus sinensis])

HSP 1 Score: 159.5 bits (402), Expect = 3.8e-36
Identity = 76/95 (80.00%), Postives = 84/95 (88.42%), Query Frame = 1


Query: 1  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRY 60
          MA RQ+AV TLPNL+R+L+    K   +QPLPSLRRAFSLYDQINLIDNVPEDQLRFQ Y
Sbjct: 1  MAVRQRAVTTLPNLMRSLRKGSPKAAPNQPLPSLRRAFSLYDQINLIDNVPEDQLRFQGY 60

Query: 61 TETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEIT 96
          T+TGFTVNGV YEGSLLC+GNLL+SWTPKKFSEIT
Sbjct: 61 TDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEIT 95

[Close]

BLAST of CSPI06G06200 vs. NCBI nr
Match: gi|568819622|ref|XP_006464347.1| (PREDICTED: uncharacterized protein LOC102631083 isoform X5 [Citrus sinensis])

HSP 1 Score: 159.5 bits (402), Expect = 3.8e-36
Identity = 76/95 (80.00%), Postives = 84/95 (88.42%), Query Frame = 1


Query: 1  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRY 60
          MA RQ+AV TLPNL+R+L+    K   +QPLPSLRRAFSLYDQINLIDNVPEDQLRFQ Y
Sbjct: 1  MAVRQRAVTTLPNLMRSLRKGSPKAAPNQPLPSLRRAFSLYDQINLIDNVPEDQLRFQGY 60

Query: 61 TETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEIT 96
          T+TGFTVNGV YEGSLLC+GNLL+SWTPKKFSEIT
Sbjct: 61 TDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEIT 95

[Close]

BLAST of CSPI06G06200 vs. NCBI nr
Match: gi|568819620|ref|XP_006464346.1| (PREDICTED: uncharacterized protein LOC102631083 isoform X3 [Citrus sinensis])

HSP 1 Score: 159.5 bits (402), Expect = 3.8e-36
Identity = 76/95 (80.00%), Postives = 84/95 (88.42%), Query Frame = 1


Query: 1  MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRY 60
          MA RQ+AV TLPNL+R+L+    K   +QPLPSLRRAFSLYDQINLIDNVPEDQLRFQ Y
Sbjct: 1  MAVRQRAVTTLPNLMRSLRKGSPKAAPNQPLPSLRRAFSLYDQINLIDNVPEDQLRFQGY 60

Query: 61 TETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEIT 96
          T+TGFTVNGV YEGSLLC+GNLL+SWTPKKFSEIT
Sbjct: 61 TDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEIT 95

The following BLAST results are available for this feature:

BLAST of CSPI06G06200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G06200 vs. TrEMBL


Match Name	E-value	Identity	Description
V4VZ28_9ROSI	2.6e-36	80.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022551mg PE=4 SV=1	[more]
A0A067H377_CITSI	2.6e-36	80.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030786mg PE=4 SV=1	[more]
W9R8M0_9ROSA	7.7e-36	74.04	Uncharacterized protein OS=Morus notabilis GN=L484_015613 PE=4 SV=1	[more]
W9RFV5_9ROSA	7.7e-36	74.04	Uncharacterized protein OS=Morus notabilis GN=L484_023877 PE=4 SV=1	[more]
I1JMH1_SOYBN	1.1e-34	74.51	Uncharacterized protein OS=Glycine max GN=GLYMA_03G100700 PE=4 SV=1	[more]

BLAST of CSPI06G06200 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G60150.1	1.5e-35	71.29	Protein of unknown function (DUF498/DUF598)	[more]
AT2G44525.1	7.6e-35	69.61	Protein of unknown function (DUF498/DUF598)	[more]

BLAST of CSPI06G06200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120205\|ref\|XP_008460070.1\|	1.8e-46	92.08	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|1009110353\|ref\|XP_015895139.1\|	1.4e-38	79.21	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|985429169\|ref\|XP_015383687.1\|	3.8e-36	80.00	PREDICTED: uncharacterized protein LOC102631083 isoform X4 [Citrus sinensis]	[more]
gi\|568819622\|ref\|XP_006464347.1\|	3.8e-36	80.00	PREDICTED: uncharacterized protein LOC102631083 isoform X5 [Citrus sinensis]	[more]
gi\|568819620\|ref\|XP_006464346.1\|	3.8e-36	80.00	PREDICTED: uncharacterized protein LOC102631083 isoform X3 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007523	NDUFAF3/AAMDC

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G06200.1	CSPI06G06200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007523	NDUFAF3/Mth938 domain-containing protein	GENE3D	G3DSA:3.40.1230.10		coord: 45..100 score: 3.0
IPR007523	NDUFAF3/Mth938 domain-containing protein	PANTHER	PTHR21192	NUCLEAR PROTEIN E3-3	coord: 13..101 score: 2.7
IPR007523	NDUFAF3/Mth938 domain-containing protein	unknown	SSF64076	MTH938-like	coord: 44..105 score: 6.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G06200	Cla006994	Watermelon (97103) v1	cpiwmB556
CSPI06G06200	Csa6G079230	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G06200	MELO3C022467	Melon (DHL92) v3.5.1	cpimeB433
CSPI06G06200	ClCG06G000740	Watermelon (Charleston Gray)	cpiwcgB503
CSPI06G06200	Lsi09G018680	Bottle gourd (USVL1VR-Ls)	cpilsiB404
CSPI06G06200	MELO3C022467.2	Melon (DHL92) v3.6.1	cpimedB431
CSPI06G06200	Cla97C06G109990	Watermelon (97103) v2	cpiwmbB495
CSPI06G06200	Bhi12G002241	Wax gourd	cpiwgoB548
CSPI06G06200	CmaCh08G009770	Cucurbita maxima (Rimu)	cmacpiB926
CSPI06G06200	CmoCh08G009450	Cucurbita moschata (Rifu)	cmocpiB905
CSPI06G06200	Cp4.1LG17g02790	Cucurbita pepo (Zucchini)	cpecpiB318
CSPI06G06200	Carg11067	Silver-seed gourd	carcpiB1117

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G06200	Silver-seed gourd	carcpiB0263
CSPI06G06200	Silver-seed gourd	carcpiB0653
CSPI06G06200	Silver-seed gourd	carcpiB0999
CSPI06G06200	Cucumber (Chinese Long) v3	cpicucB335
CSPI06G06200	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G06200	Watermelon (97103) v2	cpiwmbB485
CSPI06G06200	Wax gourd	cpiwgoB560
CSPI06G06200	Wild cucumber (PI 183967)	cpicpiB126
CSPI06G06200	Cucumber (Gy14) v1	cgycpiB393
CSPI06G06200	Cucumber (Gy14) v1	cgycpiB540
CSPI06G06200	Cucurbita maxima (Rimu)	cmacpiB273
CSPI06G06200	Cucurbita maxima (Rimu)	cmacpiB373
CSPI06G06200	Cucurbita maxima (Rimu)	cmacpiB856
CSPI06G06200	Cucurbita moschata (Rifu)	cmocpiB263
CSPI06G06200	Cucurbita moschata (Rifu)	cmocpiB362
CSPI06G06200	Cucurbita moschata (Rifu)	cmocpiB839
CSPI06G06200	Cucumber (Chinese Long) v2	cpicuB283
CSPI06G06200	Melon (DHL92) v3.5.1	cpimeB496
CSPI06G06200	Watermelon (Charleston Gray)	cpiwcgB494
CSPI06G06200	Watermelon (97103) v1	cpiwmB508
CSPI06G06200	Cucurbita pepo (Zucchini)	cpecpiB145
CSPI06G06200	Cucurbita pepo (Zucchini)	cpecpiB633
CSPI06G06200	Cucurbita pepo (Zucchini)	cpecpiB879
CSPI06G06200	Bottle gourd (USVL1VR-Ls)	cpilsiB470
CSPI06G06200	Melon (DHL92) v3.6.1	cpimedB483
CSPI06G06200	Cucumber (Gy14) v2	cgybcpiB141
CSPI06G06200	Cucumber (Gy14) v2	cgybcpiB288