Csa6G079200 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G079200
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 5374303 .. 5376370 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTAAGCTGTATGCTCTAATTGTTTCAAAGCAGAAATATAGAATCTTCCTTAGAAAAGTTTCAGAAAGATGCATGATTGCACCAACCAAGACAACTGAAGAAATCCTGTGGTCAAAATTCCTCTCCCAACATGCTTCATTCATGTTACAAAATGTCCAACAAAAAGGAAACTCCCATCTCAATCCTTCTCAAAACCCTAATATCCATCCTTTAATTCCTATCCATCAAACTTGTTCATTAAACCCTAACAATGGCGACGGTCACTCCAAGCGTAAACCATCGAGTTTCGAGGCATACCACTTGCCCTACTACGGTCTAGGGAACCCAACAAGTTTTATGACCAACTTCACCGGTTGTCCATTGCCAATAACGAACCAAAATTACAATGCTCAAGCTTTCAACCACAGTGGTGCTCAGTTCCCAAATTTGAATCACCTTGAGGATCCTTCTTATCTAGGTTGTTCAAGCTTCTGTGGCTATAACAACTACAACAAGTTCCCGGTCGGCTTTGGCGAGGGAGTTCCGATGGCAACTCAGATGGGGATTCCTTCAAATGGATTTGATGGAAATGGTGAGTTTGGTCAATATGGTATTGGATTTGGTGGGAGTCATAACAGTTACAATTGGGGGTTGATGTGTAATAATAATGGTGTCAACTTTGGTGGGGATTCTCAAATCACAATGAGGCATTCAAGTCATCCTCTTGGTAATAAGGTATGCTACGAAGAGTCAAACCTTCCCTCTTTAGATATTTAATTTCTTTTGTGCCTTTGTTGGTGTGTTTAATTTCAAAATTAAGCTAAATCTATAGTGTTTAACCAAATACAATGGTGAATGGTTTGTTAGAAGGATTGGCTCCTTCCCTCTTTAGATAGTAATGTTTTCAAATATAGCAAAATGAACGCAAGTTATTTATAAATATAGTAAAATTTTAATTTTTATTAGTGGTAGTTATAGACTGTAATAAACATCTATTATGTGAATCTTCTAGGCTTTATTGTAGGTAGGAAGTAAAAATTTCGTTATATTTATAAATATATTTCAACTATTTTTTTTCATTTAAAACAATTTTCCTTTACATTTTGTTGAGAAAAAAAACCTATAATACTGTTAGTTATTTTCTAGAAAGTACGATACATTCAAAGTCTATGAGCAATAGAGCCTACAATTCTATGAACAAAAGAATCTTTAATTCACTCATACATTTCGTTATATATATATTTTTTTTTTTTTTTTTTTTTTGTTATATAATACCCACATATATATATATATAGTAGTGCAATTGGTTTCATTTGTAAAATTAGGATAGGAGCCAAAGCAGATTCTGATTTCTTAATTTTTCTTTTTCTATGTTCCCTTGCAGAACCCTGTTGATAATTCAATATTCCATCAACAAGTAAGTGATGAAATCTCAAAAACTTAACTTTCCATACTTTCTCAATATATAATGTATAGAAGAACTATATATATAGGATAAATATGTGTTGACAATTATTTCCTTTTCAATATATATATATATATAGTTCACATGGTTTTGAAAAAACTCAGTTTAATCCTTTGAAATATACTAAAACTTGTCAATTTAGATTAAAGTTTTTTGTTAATTAAAAAACAAAATTTCAATTTAAGATCTCACTATTGAAAAATGTTAAAAATTGATTAATTATATACTCTTACGTGGCACATACTTAGTGAATTAGCCAATAATTTAGAGAGAGAGAGAGAGAGAAAAAGTCAACAAAAAGAAGAAAACTCAAAACTCCAATCAATTTCTTAGGCATTTCACTTTTTTGTCTTTTAAAGATGAAAATGAAACAAACTTTAATTTAAAGTTTTTTTATGGAATAATGAAATAGAATTATATTTACTTTAAACCTTAATTGTAATAAAACTATGTAAGTGTAGTTGAGATTAATTGTTATTTAATTATTTGCAGCAGCAGCAACCTAATGGAGGTTTCATGAAAGACCAAAGCCAGCAGTTGTGCAACATAGTGTCCACAGCAGCTGAAGAAACTCCAACAACTGATCCTTTATCCATTGATGAACAGGTAAACCCTTCTTAA

mRNA sequence

ATGTTTAAGCTGTATGCTCTAATTGTTTCAAAGCAGAAATATAGAATCTTCCTTAGAAAAGTTTCAGAAAGATGCATGATTGCACCAACCAAGACAACTGAAGAAATCCTGTGGTCAAAATTCCTCTCCCAACATGCTTCATTCATGTTACAAAATGTCCAACAAAAAGGAAACTCCCATCTCAATCCTTCTCAAAACCCTAATATCCATCCTTTAATTCCTATCCATCAAACTTGTTCATTAAACCCTAACAATGGCGACGGTCACTCCAAGCGTAAACCATCGAGTTTCGAGGCATACCACTTGCCCTACTACGGTCTAGGGAACCCAACAAGTTTTATGACCAACTTCACCGGTTGTCCATTGCCAATAACGAACCAAAATTACAATGCTCAAGCTTTCAACCACAGTGGTGCTCAGTTCCCAAATTTGAATCACCTTGAGGATCCTTCTTATCTAGGTTGTTCAAGCTTCTGTGGCTATAACAACTACAACAAGTTCCCGGTCGGCTTTGGCGAGGGAGTTCCGATGGCAACTCAGATGGGGATTCCTTCAAATGGATTTGATGGAAATGGTGAGTTTGGTCAATATGGTATTGGATTTGGTGGGAGTCATAACAGTTACAATTGGGGGTTGATGTGTAATAATAATGGTGTCAACTTTGGTGGGGATTCTCAAATCACAATGAGGCATTCAAGTCATCCTCTTGGTAATAAGAACCCTGTTGATAATTCAATATTCCATCAACAACAGCAGCAACCTAATGGAGGTTTCATGAAAGACCAAAGCCAGCAGTTGTGCAACATAGTGTCCACAGCAGCTGAAGAAACTCCAACAACTGATCCTTTATCCATTGATGAACAGGTAAACCCTTCTTAA

Coding sequence (CDS)

ATGTTTAAGCTGTATGCTCTAATTGTTTCAAAGCAGAAATATAGAATCTTCCTTAGAAAAGTTTCAGAAAGATGCATGATTGCACCAACCAAGACAACTGAAGAAATCCTGTGGTCAAAATTCCTCTCCCAACATGCTTCATTCATGTTACAAAATGTCCAACAAAAAGGAAACTCCCATCTCAATCCTTCTCAAAACCCTAATATCCATCCTTTAATTCCTATCCATCAAACTTGTTCATTAAACCCTAACAATGGCGACGGTCACTCCAAGCGTAAACCATCGAGTTTCGAGGCATACCACTTGCCCTACTACGGTCTAGGGAACCCAACAAGTTTTATGACCAACTTCACCGGTTGTCCATTGCCAATAACGAACCAAAATTACAATGCTCAAGCTTTCAACCACAGTGGTGCTCAGTTCCCAAATTTGAATCACCTTGAGGATCCTTCTTATCTAGGTTGTTCAAGCTTCTGTGGCTATAACAACTACAACAAGTTCCCGGTCGGCTTTGGCGAGGGAGTTCCGATGGCAACTCAGATGGGGATTCCTTCAAATGGATTTGATGGAAATGGTGAGTTTGGTCAATATGGTATTGGATTTGGTGGGAGTCATAACAGTTACAATTGGGGGTTGATGTGTAATAATAATGGTGTCAACTTTGGTGGGGATTCTCAAATCACAATGAGGCATTCAAGTCATCCTCTTGGTAATAAGAACCCTGTTGATAATTCAATATTCCATCAACAACAGCAGCAACCTAATGGAGGTTTCATGAAAGACCAAAGCCAGCAGTTGTGCAACATAGTGTCCACAGCAGCTGAAGAAACTCCAACAACTGATCCTTTATCCATTGATGAACAGGTAAACCCTTCTTAA

Protein sequence

MFKLYALIVSKQKYRIFLRKVSERCMIAPTKTTEEILWSKFLSQHASFMLQNVQQKGNSHLNPSQNPNIHPLIPIHQTCSLNPNNGDGHSKRKPSSFEAYHLPYYGLGNPTSFMTNFTGCPLPITNQNYNAQAFNHSGAQFPNLNHLEDPSYLGCSSFCGYNNYNKFPVGFGEGVPMATQMGIPSNGFDGNGEFGQYGIGFGGSHNSYNWGLMCNNNGVNFGGDSQITMRHSSHPLGNKNPVDNSIFHQQQQQPNGGFMKDQSQQLCNIVSTAAEETPTTDPLSIDEQVNPS*
Homology
[Close]
BLAST of Csa6G079200 vs. TrEMBL
Match: A0A0A0K933_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G079200 PE=4 SV=1)

HSP 1 Score: 624.8 bits (1610), Expect = 5.4e-176
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 1 

Query: 1   MFKLYALIVSKQKYRIFLRKVSERCMIAPTKTTEEILWSKFLSQHASFMLQNVQQKGNSH 60
           MFKLYALIVSKQKYRIFLRKVSERCMIAPTKTTEEILWSKFLSQHASFMLQNVQQKGNSH
Sbjct: 1   MFKLYALIVSKQKYRIFLRKVSERCMIAPTKTTEEILWSKFLSQHASFMLQNVQQKGNSH 60

Query: 61  LNPSQNPNIHPLIPIHQTCSLNPNNGDGHSKRKPSSFEAYHLPYYGLGNPTSFMTNFTGC 120
           LNPSQNPNIHPLIPIHQTCSLNPNNGDGHSKRKPSSFEAYHLPYYGLGNPTSFMTNFTGC
Sbjct: 61  LNPSQNPNIHPLIPIHQTCSLNPNNGDGHSKRKPSSFEAYHLPYYGLGNPTSFMTNFTGC 120

Query: 121 PLPITNQNYNAQAFNHSGAQFPNLNHLEDPSYLGCSSFCGYNNYNKFPVGFGEGVPMATQ 180
           PLPITNQNYNAQAFNHSGAQFPNLNHLEDPSYLGCSSFCGYNNYNKFPVGFGEGVPMATQ
Sbjct: 121 PLPITNQNYNAQAFNHSGAQFPNLNHLEDPSYLGCSSFCGYNNYNKFPVGFGEGVPMATQ 180

Query: 181 MGIPSNGFDGNGEFGQYGIGFGGSHNSYNWGLMCNNNGVNFGGDSQITMRHSSHPLGNKN 240
           MGIPSNGFDGNGEFGQYGIGFGGSHNSYNWGLMCNNNGVNFGGDSQITMRHSSHPLGNKN
Sbjct: 181 MGIPSNGFDGNGEFGQYGIGFGGSHNSYNWGLMCNNNGVNFGGDSQITMRHSSHPLGNKN 240

Query: 241 PVDNSIFHQQQQQPNGGFMKDQSQQLCNIVSTAAEETPTTDPLSIDEQVNPS 293
           PVDNSIFHQQQQQPNGGFMKDQSQQLCNIVSTAAEETPTTDPLSIDEQVNPS
Sbjct: 241 PVDNSIFHQQQQQPNGGFMKDQSQQLCNIVSTAAEETPTTDPLSIDEQVNPS 292

[Close]
BLAST of Csa6G079200 vs. NCBI nr
Match: gi|700191071|gb|KGN46275.1| (hypothetical protein Csa_6G079200 [Cucumis sativus])

HSP 1 Score: 624.8 bits (1610), Expect = 7.7e-176
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 1 

Query: 1   MFKLYALIVSKQKYRIFLRKVSERCMIAPTKTTEEILWSKFLSQHASFMLQNVQQKGNSH 60
           MFKLYALIVSKQKYRIFLRKVSERCMIAPTKTTEEILWSKFLSQHASFMLQNVQQKGNSH
Sbjct: 1   MFKLYALIVSKQKYRIFLRKVSERCMIAPTKTTEEILWSKFLSQHASFMLQNVQQKGNSH 60

Query: 61  LNPSQNPNIHPLIPIHQTCSLNPNNGDGHSKRKPSSFEAYHLPYYGLGNPTSFMTNFTGC 120
           LNPSQNPNIHPLIPIHQTCSLNPNNGDGHSKRKPSSFEAYHLPYYGLGNPTSFMTNFTGC
Sbjct: 61  LNPSQNPNIHPLIPIHQTCSLNPNNGDGHSKRKPSSFEAYHLPYYGLGNPTSFMTNFTGC 120

Query: 121 PLPITNQNYNAQAFNHSGAQFPNLNHLEDPSYLGCSSFCGYNNYNKFPVGFGEGVPMATQ 180
           PLPITNQNYNAQAFNHSGAQFPNLNHLEDPSYLGCSSFCGYNNYNKFPVGFGEGVPMATQ
Sbjct: 121 PLPITNQNYNAQAFNHSGAQFPNLNHLEDPSYLGCSSFCGYNNYNKFPVGFGEGVPMATQ 180

Query: 181 MGIPSNGFDGNGEFGQYGIGFGGSHNSYNWGLMCNNNGVNFGGDSQITMRHSSHPLGNKN 240
           MGIPSNGFDGNGEFGQYGIGFGGSHNSYNWGLMCNNNGVNFGGDSQITMRHSSHPLGNKN
Sbjct: 181 MGIPSNGFDGNGEFGQYGIGFGGSHNSYNWGLMCNNNGVNFGGDSQITMRHSSHPLGNKN 240

Query: 241 PVDNSIFHQQQQQPNGGFMKDQSQQLCNIVSTAAEETPTTDPLSIDEQVNPS 293
           PVDNSIFHQQQQQPNGGFMKDQSQQLCNIVSTAAEETPTTDPLSIDEQVNPS
Sbjct: 241 PVDNSIFHQQQQQPNGGFMKDQSQQLCNIVSTAAEETPTTDPLSIDEQVNPS 292

[Close]
BLAST of Csa6G079200 vs. NCBI nr
Match: gi|659120452|ref|XP_008460201.1| (PREDICTED: uncharacterized protein LOC103499086 [Cucumis melo])

HSP 1 Score: 479.2 bits (1232), Expect = 5.2e-132
Identity = 239/282 (84.75%), Postives = 253/282 (89.72%), Query Frame = 1 

Query: 12  QKYRIFLRKVSERCMIAPTKTTEEILWSKFLSQHASFMLQNVQQKGNSHLNPSQNPNIHP 71
           QKYRIFLRKVSERCMI P KTTE+ILWSKFLSQHASF++Q +QQK NSHLNPSQNPNI P
Sbjct: 141 QKYRIFLRKVSERCMITPNKTTEDILWSKFLSQHASFIIQKIQQKRNSHLNPSQNPNILP 200

Query: 72  LIPIHQTCSLNPNNGDGHSKRKPSSFEAYHLPYYGLGNPTSFMTNFTGCPLPITNQNYN- 131
             PI QTCSLNP NGD  SKRKPSSFEAYHLPYYGLG+PTSFMTNFTGCPLPI NQ+YN 
Sbjct: 201 F-PIPQTCSLNPINGDRRSKRKPSSFEAYHLPYYGLGHPTSFMTNFTGCPLPIMNQSYNI 260

Query: 132 AQAFNHSGAQFPNLNHLEDPSYLGCSSFCGYNNYNKFPVGFGEGVPMATQMGIPSNGFDG 191
            QAFN+SG QFPNL+HLED SYLGCSSFCGYN+Y++F VGFG GVPMA QMGIPSNGFDG
Sbjct: 261 PQAFNYSGVQFPNLDHLEDSSYLGCSSFCGYNSYDRFSVGFGGGVPMA-QMGIPSNGFDG 320

Query: 192 NGEFGQYGIGFGGSHNSYNWGLMC-NNNGVNFGGD-SQITMRHSSHPLGN-KNPVDNSIF 251
           NGEFGQYGIGFGG+H+SYNWGLMC NNNGVNF GD  QIT RHSSHPLGN KNPVDNSIF
Sbjct: 321 NGEFGQYGIGFGGNHSSYNWGLMCNNNNGVNFDGDHCQITTRHSSHPLGNYKNPVDNSIF 380

Query: 252 HQQQQQPNGGFMKDQSQQ-LCNIVSTAAEETPTTDPLSIDEQ 289
           H  +QQPNGGFMKDQSQQ LCNIVSTAAEETPTTDP SIDEQ
Sbjct: 381 H--KQQPNGGFMKDQSQQYLCNIVSTAAEETPTTDPFSIDEQ 418

The following BLAST results are available for this feature:
BLAST of Csa6G079200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K933_CUCSA5.4e-176100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G079200 PE=4 SV=1[more]
BLAST of Csa6G079200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191071|gb|KGN46275.1|7.7e-176100.00hypothetical protein Csa_6G079200 [Cucumis sativus][more]
gi|659120452|ref|XP_008460201.1|5.2e-13284.75PREDICTED: uncharacterized protein LOC103499086 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0000160 phosphorelay signal transduction system
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU160217cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G079200.1Csa6G079200.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU160217CU160217transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G079200Cla006991Watermelon (97103) v1cuwmB537
Csa6G079200ClCG06G000720Watermelon (Charleston Gray)cuwcgB476
Csa6G079200Lsi09G018710Bottle gourd (USVL1VR-Ls)culsiB402
Csa6G079200Cla97C06G109970Watermelon (97103) v2cuwmbB468
Csa6G079200Bhi12G002246Wax gourdcuwgoB544
Csa6G079200CSPI06G06180Wild cucumber (PI 183967)cpicuB314
Csa6G079200CmaCh08G009790Cucurbita maxima (Rimu)cmacuB906
Csa6G079200CmoCh08G009470Cucurbita moschata (Rifu)cmocuB892
Csa6G079200Cp4.1LG17g02770Cucurbita pepo (Zucchini)cpecuB317
Csa6G079200Carg11065Silver-seed gourdcarcuB1095
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G079200Melon (DHL92) v3.6.1cumedB422
Csa6G079200Melon (DHL92) v3.6.1cumedB474
Csa6G079200Silver-seed gourdcarcuB0259
Csa6G079200Silver-seed gourdcarcuB0645
Csa6G079200Silver-seed gourdcarcuB0976
Csa6G079200Watermelon (97103) v2cuwmbB460
Csa6G079200Wax gourdcuwgoB555
Csa6G079200Cucumber (Chinese Long) v2cucuB111
Csa6G079200Cucumber (Gy14) v1cgycuB374
Csa6G079200Cucumber (Gy14) v1cgycuB511
Csa6G079200Cucurbita maxima (Rimu)cmacuB269
Csa6G079200Cucurbita maxima (Rimu)cmacuB369
Csa6G079200Cucurbita maxima (Rimu)cmacuB841
Csa6G079200Cucurbita moschata (Rifu)cmocuB257
Csa6G079200Cucurbita moschata (Rifu)cmocuB359
Csa6G079200Cucurbita moschata (Rifu)cmocuB829
Csa6G079200Melon (DHL92) v3.5.1cumeB442
Csa6G079200Melon (DHL92) v3.5.1cumeB494
Csa6G079200Watermelon (Charleston Gray)cuwcgB470
Csa6G079200Watermelon (97103) v1cuwmB493
Csa6G079200Cucurbita pepo (Zucchini)cpecuB143
Csa6G079200Cucurbita pepo (Zucchini)cpecuB629
Csa6G079200Cucurbita pepo (Zucchini)cpecuB877
Csa6G079200Bottle gourd (USVL1VR-Ls)culsiB462
Csa6G079200Cucumber (Gy14) v2cgybcuB138
Csa6G079200Cucumber (Gy14) v2cgybcuB282