Csa6G077960 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G077960
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 5221290 .. 5221684 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCATCGAATCAACAACCGATTAAATTGAGGAAAAGACAGAGCAATAAACCTCCAAAGTCCCACTTTCGGCGTTCACTGAGCATGAAGAAAGAAACAAATGCAAAAGGAAGCAAAAAACGGGCGAATGGCAGTATGTGAAGGACAAGCGTCCATGGCTACCGAAGTCAGCTTCCATACAATTTCACTTGCTTTCTTTCAAAGCTTCCGCCATGCATGGCCAGCTTTACTTCCAATTCTACTCAATCTCCTCTCCCTCTTTAATTACTCTCAATTCCAATCTCCGCTTCCCTTCTAATTTCTCCATAAACCAGCAGTGGAACCATTTTTTTTTTAGGGCAATGGAGTCAAAACCAGACCTCAAATCCAATGACGAACTTCAGGTGAGGTGA

mRNA sequence

ATGGAAGCATCGAATCAACAACCGATTAAATTGAGGAAAAGACAGAGCAATAAACCTCCAAAGTCCCACTTTCGGCGTTCACTGAGCATGAAGAAAGAAACAAATGCAAAAGGAAGCAAAAAACGGGCGAATGGCACTTCCGCCATGCATGGCCAGCTTTACTTCCAATTCTACTCAATCTCCTCTCCCTCTTTAATTACTCTCAATTCCAATCTCCGCTTCCCTTCTAATTTCTCCATAAACCAGCAGTGGAACCATTTTTTTTTTAGGGCAATGGAGTCAAAACCAGACCTCAAATCCAATGACGAACTTCAGGTGAGGTGA

Coding sequence (CDS)

ATGGAAGCATCGAATCAACAACCGATTAAATTGAGGAAAAGACAGAGCAATAAACCTCCAAAGTCCCACTTTCGGCGTTCACTGAGCATGAAGAAAGAAACAAATGCAAAAGGAAGCAAAAAACGGGCGAATGGCACTTCCGCCATGCATGGCCAGCTTTACTTCCAATTCTACTCAATCTCCTCTCCCTCTTTAATTACTCTCAATTCCAATCTCCGCTTCCCTTCTAATTTCTCCATAAACCAGCAGTGGAACCATTTTTTTTTTAGGGCAATGGAGTCAAAACCAGACCTCAAATCCAATGACGAACTTCAGGTGAGGTGA

Protein sequence

MEASNQQPIKLRKRQSNKPPKSHFRRSLSMKKETNAKGSKKRANGTSAMHGQLYFQFYSISSPSLITLNSNLRFPSNFSINQQWNHFFFRAMESKPDLKSNDELQVR*
Homology
[Close]
BLAST of Csa6G077960 vs. TrEMBL
Match: A0A0A0K908_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G077960 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 4.3e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MEASNQQPIKLRKRQSNKPPKSHFRRSLSMKKETNAKGSKKRANGTSAMHGQLYFQFYSI 60
           MEASNQQPIKLRKRQSNKPPKSHFRRSLSMKKETNAKGSKKRANGTSAMHGQLYFQFYSI
Sbjct: 1   MEASNQQPIKLRKRQSNKPPKSHFRRSLSMKKETNAKGSKKRANGTSAMHGQLYFQFYSI 60

Query: 61  SSPSLITLNSNLRFPSNFSINQQWNHFFFRAMESKPDLKSNDELQVR 108
           SSPSLITLNSNLRFPSNFSINQQWNHFFFRAMESKPDLKSNDELQVR
Sbjct: 61  SSPSLITLNSNLRFPSNFSINQQWNHFFFRAMESKPDLKSNDELQVR 107

[Close]
BLAST of Csa6G077960 vs. NCBI nr
Match: gi|700191046|gb|KGN46250.1| (hypothetical protein Csa_6G077960 [Cucumis sativus])

HSP 1 Score: 218.4 bits (555), Expect = 6.1e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MEASNQQPIKLRKRQSNKPPKSHFRRSLSMKKETNAKGSKKRANGTSAMHGQLYFQFYSI 60
           MEASNQQPIKLRKRQSNKPPKSHFRRSLSMKKETNAKGSKKRANGTSAMHGQLYFQFYSI
Sbjct: 1   MEASNQQPIKLRKRQSNKPPKSHFRRSLSMKKETNAKGSKKRANGTSAMHGQLYFQFYSI 60

Query: 61  SSPSLITLNSNLRFPSNFSINQQWNHFFFRAMESKPDLKSNDELQVR 108
           SSPSLITLNSNLRFPSNFSINQQWNHFFFRAMESKPDLKSNDELQVR
Sbjct: 61  SSPSLITLNSNLRFPSNFSINQQWNHFFFRAMESKPDLKSNDELQVR 107

[Close]
BLAST of Csa6G077960 vs. NCBI nr
Match: gi|778711234|ref|XP_011656704.1| (PREDICTED: protein NRT1/ PTR FAMILY 7.3-like [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 2.7e-25
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 

Query: 49  MHGQLYFQFYSISSPSLITLNSNLRFPSNFSINQQWNHFFFRAMESKPDLKSNDELQV 107
           MHGQLYFQFYSISSPSLITLNSNLRFPSNFSINQQWNHFFFRAMESKPDLKSNDELQV
Sbjct: 1   MHGQLYFQFYSISSPSLITLNSNLRFPSNFSINQQWNHFFFRAMESKPDLKSNDELQV 58

The following BLAST results are available for this feature:
BLAST of Csa6G077960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K908_CUCSA4.3e-54100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G077960 PE=4 SV=1[more]
BLAST of Csa6G077960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191046|gb|KGN46250.1|6.1e-54100.00hypothetical protein Csa_6G077960 [Cucumis sativus][more]
gi|778711234|ref|XP_011656704.1|2.7e-25100.00PREDICTED: protein NRT1/ PTR FAMILY 7.3-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006810 transport
cellular_component GO:0005575 cellular_component
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0005215 transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G077960.1Csa6G077960.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G077960Cucsa.362690Cucumber (Gy14) v1cgycuB511
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G077960Wax gourdcuwgoB544
Csa6G077960Cucumber (Chinese Long) v2cucuB111
Csa6G077960Cucumber (Gy14) v1cgycuB374
Csa6G077960Cucurbita maxima (Rimu)cmacuB269
Csa6G077960Cucurbita maxima (Rimu)cmacuB369
Csa6G077960Cucurbita maxima (Rimu)cmacuB841
Csa6G077960Cucurbita maxima (Rimu)cmacuB895
Csa6G077960Cucurbita moschata (Rifu)cmocuB257
Csa6G077960Cucurbita moschata (Rifu)cmocuB359
Csa6G077960Cucurbita moschata (Rifu)cmocuB829
Csa6G077960Cucurbita moschata (Rifu)cmocuB880
Csa6G077960Melon (DHL92) v3.5.1cumeB442
Csa6G077960Melon (DHL92) v3.5.1cumeB494
Csa6G077960Watermelon (Charleston Gray)cuwcgB470
Csa6G077960Watermelon (Charleston Gray)cuwcgB476
Csa6G077960Watermelon (97103) v1cuwmB493
Csa6G077960Watermelon (97103) v1cuwmB537
Csa6G077960Cucurbita pepo (Zucchini)cpecuB143
Csa6G077960Cucurbita pepo (Zucchini)cpecuB323
Csa6G077960Cucurbita pepo (Zucchini)cpecuB629
Csa6G077960Cucurbita pepo (Zucchini)cpecuB877
Csa6G077960Bottle gourd (USVL1VR-Ls)culsiB402
Csa6G077960Bottle gourd (USVL1VR-Ls)culsiB462
Csa6G077960Cucumber (Gy14) v2cgybcuB138
Csa6G077960Cucumber (Gy14) v2cgybcuB282
Csa6G077960Melon (DHL92) v3.6.1cumedB422
Csa6G077960Melon (DHL92) v3.6.1cumedB474
Csa6G077960Silver-seed gourdcarcuB0259
Csa6G077960Silver-seed gourdcarcuB0645
Csa6G077960Silver-seed gourdcarcuB0976
Csa6G077960Silver-seed gourdcarcuB1096
Csa6G077960Watermelon (97103) v2cuwmbB460
Csa6G077960Watermelon (97103) v2cuwmbB468