Csa6G044010 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G044010
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 3531515 .. 3533973 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAGAAGCAAAGCCCTCAGATCTCATAGCTTTCATAGAATCATACACGGTATAAAGCAAATGGCATTTGTTCACCAAAAGCCTTTACAAACAGTGATGTGTGTGAGATTAGATGTATGGATTGAACGAAAGTGGAGTAAGGATGGAGGTGGAGATAAGAAAAGGCTAATGACAAACAAAGCCATCTGCAACCGTTCACTTCATAGTGATTTTCCATCATTGGGCAAAATCAAAGTTACTGATATCAACCAAGACAGGAAAAGCCCAAGAATTCACAGTAGAATAGAAAGAATCAGAAAACAGAAGCATACCGAGGATTTTATAGAGATATCTGAAGTCCAGGATTTGGAATGGATTTCCACATGTGTTGAAATCTAAGCACCGTAGCATCCAACTAAAGGGCTAATTCATAGTTACCAGTCACACTTAAGTCTCAATCGAGGCTTCCAAGTTTAAAATAGTGATGCAACCATGGTAATGTGTAAACAAACAATTAGATGAATAGGTCATTTCTTCAAGACTCTAATTTTGTAAGTGTTCAAAAATTTGAATATTTATCTAATTAGATTAAATTTGAAAGTTTGTATCAAAATGAGATAGTCTGACAAATTAAACTATTTCACAAGTTTCTTGAACTTGAAAACATAATGTTCCAAGATTTTTTTCATCATCTCACAGCCATCCTAAAAGACAACTCATTTAAAAAGAAAAAAAGGGGTCAGTAAAGAAAGTCAATGCAACTTTAAGAGCAAAATGTATGTACAAGATGCCCTCAGCTAATATTGATTTTGATCACTGCCTCTACATAGCAGCAACCATTACAATAATTTACCAAAAGAAAAAACAAAAGAGAAACAAAATATTCTTTGATGGTAAGAGAGAGAGAGAGAGAGAATGGTTGTTGAGGACAAAGGACTGATAAGAATCAAAGTAACATCTCTAAAATGAGTGTTTTCATCGTTGGGCAGTGGGCAATGGCCAGGTTCAATTTTCTGATAAGCAGGGACAACCAACAATTAAGATACTAAAGCAAGCAATACAAATTCCATTTACATGTACGTTAAGAAAATCCATAAAACTTAGGGCAAATAACAGGAGAAACAAACTAAACTATAATATTTAAGGCAAATAGCAATAATCTAACAAATAAACCTCTAACTCAACAGCATGAAATTCATCCAAGAATCACCATCTAGAAATTAGAAATAGAATCAAACAAAAGAAAATTAATTTTTTAAAATAACAAAATCAAGGACAAGACATCGAAATGTATGTCTTCATACTTTAAAATGAAAAACCAAACAAATACATCTTCAGATGCATATATTCCCAGAAAGAACACGGTCATAATCATATACATTAACAAATGACTAGAAACACAAACAAGTTTAGACGCAACAGATTTATCATCCTAAGCAGCATCCCCCTTATAATAAAGTGAGAAACTGCTCAAAGCCCAATCCAAATATCATTCATAATACTCCAAACCAATTCACTAAACTCAACCAAACTTATACAGCCGGCAAACAGCAAATAAAAGTCAGAGAAGGAAGAGGATCTTCTGATACACGGCCTAGAAAAAGAAGAAACAAAGCTGAGGGAGAAAGACGTAGTGTGAGAAGAAAGACAACGATGAACCAACTGAGCTAGAGCGTTCAAACAAATAGCCACCTTCAGTTAAAAATGCGATGGAAATTTGAAGGACCCTAAATCTATTTTTGAGTGGCTCGGTTTGAGCAAACCAAGAACTGTACTAGTTGGGTTTGGTTTGAATATAGAACAAAGTTGACTTGACCCAGGTGGAATTATCTGCTTCCTATGCTGCATTTTCATAAGAACTGCATTGAGAAACTGCCCCAAATCCAAGAAAACAAGTACTAAACAAACCAAAGAACAGCAAAACCTAGAATAAAACAGTACGGAAGCAAAGCCCTCAGATCTCATAGCTTTTATAGAATCATATGCGGTACAAAGCAAACGGTGTTCATTCATCAAAAGCCTTTACAGATAGTGATGTGTGTGCGATTAGATGTATGAATAGTTGAAAGAGGAGGTGATGGTAGAGGTGGAGATAAGAAAAGGCTAATGATGAACAAAGCCATCTGCAACCTTTCAATTTATATTGATTTTCCATCATTGGGCAAAACTGAAGTTCCTAATATCAATCAAGACAAGAAAAGCCTAAGAATTTATAGCCAAAAGAGCAAGAAGAAGAATCAGGGCACAAAAGCATATGAAGGATTTTATAGAGAGCTCTAAATTCCAGTATCCAGTACCATTTCTCTATGCCTGTGAGATGTTGTTAAATGCCAAAAGAGAGTATTATATAATGTATGCACATTAGAATCTGTTAAAATTTAAAAGTTTGTATCAAAATAAAAGTCTAAAAAAGCTAACCATTCCTCAAATTCCTTGAACTTCAAGACACAATGTTCCAAGATTTTTCATCATCTAGCACT

mRNA sequence

ATGGCATTTGTTCACCAAAAGCCTTTACAAACAGTGATGTGTGTGAGATTAGATGTATGGATTGAACGAAAGTGGAGTAAGGATGGAGGTGGAGATAAGAAAAGGCTAATGATGAACAAAGCCATCTGCAACCTTTCAATTTATATTGATTTTCCATCATTGGGCAAAACTGAAGTTCCTAATATCAATCAAGACAAGAAAAGCCTAAGAATTTATAGCCAAAAGAGCAAGAAGAAGAATCAGGGCACAAAAGCATATGAAGGATTTTATAGAGAGCTCTAA

Coding sequence (CDS)

ATGGCATTTGTTCACCAAAAGCCTTTACAAACAGTGATGTGTGTGAGATTAGATGTATGGATTGAACGAAAGTGGAGTAAGGATGGAGGTGGAGATAAGAAAAGGCTAATGATGAACAAAGCCATCTGCAACCTTTCAATTTATATTGATTTTCCATCATTGGGCAAAACTGAAGTTCCTAATATCAATCAAGACAAGAAAAGCCTAAGAATTTATAGCCAAAAGAGCAAGAAGAAGAATCAGGGCACAAAAGCATATGAAGGATTTTATAGAGAGCTCTAA

Protein sequence

MAFVHQKPLQTVMCVRLDVWIERKWSKDGGGDKKRLMMNKAICNLSIYIDFPSLGKTEVPNINQDKKSLRIYSQKSKKKNQGTKAYEGFYREL*
Homology
[Close]
BLAST of Csa6G044010 vs. TrEMBL
Match: A0A0A0K8H8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G044010 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 4.4e-47
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MAFVHQKPLQTVMCVRLDVWIERKWSKDGGGDKKRLMMNKAICNLSIYIDFPSLGKTEVP 60
          MAFVHQKPLQTVMCVRLDVWIERKWSKDGGGDKKRLMMNKAICNLSIYIDFPSLGKTEVP
Sbjct: 1  MAFVHQKPLQTVMCVRLDVWIERKWSKDGGGDKKRLMMNKAICNLSIYIDFPSLGKTEVP 60

Query: 61 NINQDKKSLRIYSQKSKKKNQGTKAYEGFYREL 94
          NINQDKKSLRIYSQKSKKKNQGTKAYEGFYREL
Sbjct: 61 NINQDKKSLRIYSQKSKKKNQGTKAYEGFYREL 93

[Close]
BLAST of Csa6G044010 vs. NCBI nr
Match: gi|700190816|gb|KGN46020.1| (hypothetical protein Csa_6G044010 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 6.3e-47
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MAFVHQKPLQTVMCVRLDVWIERKWSKDGGGDKKRLMMNKAICNLSIYIDFPSLGKTEVP 60
          MAFVHQKPLQTVMCVRLDVWIERKWSKDGGGDKKRLMMNKAICNLSIYIDFPSLGKTEVP
Sbjct: 1  MAFVHQKPLQTVMCVRLDVWIERKWSKDGGGDKKRLMMNKAICNLSIYIDFPSLGKTEVP 60

Query: 61 NINQDKKSLRIYSQKSKKKNQGTKAYEGFYREL 94
          NINQDKKSLRIYSQKSKKKNQGTKAYEGFYREL
Sbjct: 61 NINQDKKSLRIYSQKSKKKNQGTKAYEGFYREL 93

The following BLAST results are available for this feature:
BLAST of Csa6G044010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8H8_CUCSA4.4e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G044010 PE=4 SV=1[more]
BLAST of Csa6G044010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190816|gb|KGN46020.1|6.3e-47100.00hypothetical protein Csa_6G044010 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU095534cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G044010.1Csa6G044010.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU095534CU095534transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G044010Lsi08G003000Bottle gourd (USVL1VR-Ls)culsiB476
Csa6G044010CSPI06G03800Wild cucumber (PI 183967)cpicuB314
Csa6G044010Cucsa.364820Cucumber (Gy14) v1cgycuB511
Csa6G044010CsGy6G003770Cucumber (Gy14) v2cgybcuB282
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G044010Wax gourdcuwgoB588