CSPI06G03800 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G03800
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 3576250 .. 3576945 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCCTCCGGTCAAAGTCATACGAATTACAGTAAGAAACTGCCCCAAATCCAAGAAAACATGCAATACACAAACGAAAGAAGAATAAAACCTAGAACAAACCAGTATAGAAGCAAAGCCCTCAGATCTCATAGCTTTCATAGAATCATACACGGTATAAAGCAAATGGCATTTGTTCACCAAAACCCTTTACAAACAGTGATGTGTGTGAGATTAGATGTATGGATTGAACGAAAGTGGAGTAAGGATGGAGGTGGAGATAAGAAAAGGCTAATGACAAACAAAGCCATCTGCAACCGTTCACTTCATAGTGATTTTCCATCATTGGGCAAAATCGAAGTTACTGATATCAACCAAGACAGGAAAAGCCGAAGAATTCACAGTAGAATAGAAAGAATCAGAAAACAGAAGCATACCGAGGATTTTATAGAGATATCTGAAGTCCAGGATTTGGAATGGATTTCCACATGTGTTGAAATCTATTGAGAAGCCAAGCACCGTAGCATCCAACTAAAGGGCTAATTCATAGTTACCAGTCACACTTAGGCTTCCAAGTTTAAAATAGAGATGCAACCATGGTAATGTGTAAACAAACAATTAGATGAATAGGTCATTTCTTCAAGATTCTAATTTTGTAAGTGTTCAAAAATTTGAATATTTATTTAATTAGATTAAATTTGAAAGTTTGTATCAAAATG

mRNA sequence

ATGCAATACACAAACGAAAGAAGAATAAAACCTAGAACAAACCAGTATAGAAGCAAAGCCCTCAGATCTCATAGCTTTCATAGAATCATACACGGTATAAAGCAAATGGCATTTGTTCACCAAAACCCTTTACAAACAGTGATGTGTGTGAGATTAGATGTATGGATTGAACGAAAGTGGAGTAAGGATGGAGGTGGAGATAAGAAAAGGCTAATGACAAACAAAGCCATCTGCAACCGTTCACTTCATAGTGATTTTCCATCATTGGGCAAAATCGAAGTTACTGATATCAACCAAGACAGGAAAAGCCGAAGAATTCACAGTAGAATAGAAAGAATCAGAAAACAGAAGCATACCGAGGATTTTATAGAGATATCTGAAGTCCAGGATTTGGAATGGATTTCCACATGTGTTGAAATCTATTGA

Coding sequence (CDS)

ATGCAATACACAAACGAAAGAAGAATAAAACCTAGAACAAACCAGTATAGAAGCAAAGCCCTCAGATCTCATAGCTTTCATAGAATCATACACGGTATAAAGCAAATGGCATTTGTTCACCAAAACCCTTTACAAACAGTGATGTGTGTGAGATTAGATGTATGGATTGAACGAAAGTGGAGTAAGGATGGAGGTGGAGATAAGAAAAGGCTAATGACAAACAAAGCCATCTGCAACCGTTCACTTCATAGTGATTTTCCATCATTGGGCAAAATCGAAGTTACTGATATCAACCAAGACAGGAAAAGCCGAAGAATTCACAGTAGAATAGAAAGAATCAGAAAACAGAAGCATACCGAGGATTTTATAGAGATATCTGAAGTCCAGGATTTGGAATGGATTTCCACATGTGTTGAAATCTATTGA
Homology
[Close]
BLAST of CSPI06G03800 vs. TrEMBL
Match: A0A0A0K8H8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G044010 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 6.9e-28
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 1 

Query: 36  MAFVHQNPLQTVMCVRLDVWIERKWSKDGGGDKKRLMTNKAICNRSLHSDFPSLGKIEVT 95
           MAFVHQ PLQTVMCVRLDVWIERKWSKDGGGDKKRLM NKAICN S++ DFPSLGK EV 
Sbjct: 1   MAFVHQKPLQTVMCVRLDVWIERKWSKDGGGDKKRLMMNKAICNLSIYIDFPSLGKTEVP 60

Query: 96  DINQDRKSRRIHSRIERIRKQ 117
           +INQD+KS RI+S+  + + Q
Sbjct: 61  NINQDKKSLRIYSQKSKKKNQ 81

[Close]
BLAST of CSPI06G03800 vs. NCBI nr
Match: gi|700190816|gb|KGN46020.1| (hypothetical protein Csa_6G044010 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 9.9e-28
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 1 

Query: 36  MAFVHQNPLQTVMCVRLDVWIERKWSKDGGGDKKRLMTNKAICNRSLHSDFPSLGKIEVT 95
           MAFVHQ PLQTVMCVRLDVWIERKWSKDGGGDKKRLM NKAICN S++ DFPSLGK EV 
Sbjct: 1   MAFVHQKPLQTVMCVRLDVWIERKWSKDGGGDKKRLMMNKAICNLSIYIDFPSLGKTEVP 60

Query: 96  DINQDRKSRRIHSRIERIRKQ 117
           +INQD+KS RI+S+  + + Q
Sbjct: 61  NINQDKKSLRIYSQKSKKKNQ 81

The following BLAST results are available for this feature:
BLAST of CSPI06G03800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G03800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8H8_CUCSA6.9e-2876.54Uncharacterized protein OS=Cucumis sativus GN=Csa_6G044010 PE=4 SV=1[more]
BLAST of CSPI06G03800 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G03800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190816|gb|KGN46020.1|9.9e-2876.54hypothetical protein Csa_6G044010 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G03800.1CSPI06G03800.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G03800Csa6G044010Cucumber (Chinese Long) v2cpicuB314
CSPI06G03800Lsi08G002990Bottle gourd (USVL1VR-Ls)cpilsiB484
CSPI06G03800CsaV3_6G004070Cucumber (Chinese Long) v3cpicucB364
CSPI06G03800Cucsa.364820Cucumber (Gy14) v1cgycpiB540
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G03800Cucumber (Gy14) v2cgybcpiB288
CSPI06G03800Wax gourdcpiwgoB593