Csa6G014900 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G014900
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 1852498 .. 1852865 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACCAACACTCAAACATCCAAATTCAATCCTCCATCTAATTACTTCTTCTACACCATGGGAGGCAACAGGCAAAAGAAATCTCACTCATCTTTTTCAATCTTTAGCTTTTTCAAGTCCAAAAGGGGTCGAAAAGGAGACCACTACGACCATGGTGGCGCTTGGCCGGACGAGATGCCGAGATCCAACAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGATTGCTGAACCTGGCATTGATCGAAAGGCCAAAGATTATATTGACAGGATTTATCGAAATCGTGTTTTTGAATCGGAGCGCCAAACTGTCACTATATCTCCCAATGGAACAAAATCCAATGTGTAAATAATTTGTCTATAT

mRNA sequence

ATGGGAGGCAACAGGCAAAAGAAATCTCACTCATCTTTTTCAATCTTTAGCTTTTTCAAGTCCAAAAGGGGTCGAAAAGGAGACCACTACGACCATGGTGGCGCTTGGCCGGACGAGATGCCGAGATCCAACAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGATTGCTGAACCTGGCATTGATCGAAAGGCCAAAGATTATATTGACAGGATTTATCGAAATCGTGTTTTTGAATCGGAGCGCCAAACTGTCACTATATCTCCCAATGGAACAAAATCCAATGTGTAA

Coding sequence (CDS)

ATGGGAGGCAACAGGCAAAAGAAATCTCACTCATCTTTTTCAATCTTTAGCTTTTTCAAGTCCAAAAGGGGTCGAAAAGGAGACCACTACGACCATGGTGGCGCTTGGCCGGACGAGATGCCGAGATCCAACAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGATTGCTGAACCTGGCATTGATCGAAAGGCCAAAGATTATATTGACAGGATTTATCGAAATCGTGTTTTTGAATCGGAGCGCCAAACTGTCACTATATCTCCCAATGGAACAAAATCCAATGTGTAA

Protein sequence

MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV*
Homology
[Close]
BLAST of Csa6G014900 vs. TrEMBL
Match: A0A0A0K7Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.2e-52
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60
          MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 99
          PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]
BLAST of Csa6G014900 vs. TrEMBL
Match: A0A0A0KBW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 9.0e-51
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 1 

Query: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60
          MGGNRQKKSHSSFSIFSFFKS+RGRKGDHYDHGGAW DEMPRSNKVWPSDEDKAHHW+AE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 99
          PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]
BLAST of Csa6G014900 vs. TrEMBL
Match: A0A0A0KAK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.1e-43
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 1 

Query: 2  GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61
          G NRQKK+H+SFSIFSFFKS+RGRKGDH +H G+  DEMPRS KVWPSDEDKAHHW+AEP
Sbjct: 3  GNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 99
          GIDRKAKDYIDRIYRNRVFESERQTVTISPNG KSNV
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]
BLAST of Csa6G014900 vs. TrEMBL
Match: A0A0A0K8V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.6e-39
Identity = 77/92 (83.70%), Postives = 81/92 (88.04%), Query Frame = 1 

Query: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60
          MGG++ KKSHSSFS FSF KSK  RKGDHYDHGG+W DE  RS KVWPSDEDKAHHW+AE
Sbjct: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPN 93
          PGIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92

[Close]
BLAST of Csa6G014900 vs. TrEMBL
Match: A0A0A0K8W0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.0e-37
Identity = 76/97 (78.35%), Postives = 85/97 (87.63%), Query Frame = 1 

Query: 2  GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61
          G +RQKK+HSSFSIFSFFKSKRGRKGD Y+HG  W D +P S+KVWPSDEDK + W+AEP
Sbjct: 3  GSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWED-VPSSSKVWPSDEDKGYRWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 99
          GIDRKAKDYIDRIY+NRVFE+ERQTVTI PNG  SNV
Sbjct: 63 GIDRKAKDYIDRIYKNRVFETERQTVTIHPNGPNSNV 98

[Close]
BLAST of Csa6G014900 vs. TAIR10
Match: AT3G05858.1 (AT3G05858.1 unknown protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-14
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = 1 

Query: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60
          MGG  +  S   FS+FSFFK++R  +    +  G+W D+   + K   SDEDK  +W+AE
Sbjct: 1  MGGKNRSHSSKRFSLFSFFKTRRSHR---VEADGSW-DDFGYTRKAMASDEDK-RYWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVT 89
          PGIDRKA  +I + +  RV ESERQT++
Sbjct: 61 PGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]
BLAST of Csa6G014900 vs. TAIR10
Match: AT5G26620.1 (AT5G26620.1 unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-09
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1 

Query: 25 RKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDRKAKDYIDRIYRNRVFESER 84
          R   H     A  D++  + K W SDEDK  +W+AEPGIDRKA  +I + + +RV ESER
Sbjct: 5  RSSHHRVEADASWDDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESER 64

Query: 85 QTV 88
          QT+
Sbjct: 65 QTL 66

[Close]
BLAST of Csa6G014900 vs. NCBI nr
Match: gi|700190666|gb|KGN45870.1| (hypothetical protein Csa_6G014900 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 3.1e-52
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60
          MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 99
          PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]
BLAST of Csa6G014900 vs. NCBI nr
Match: gi|700190663|gb|KGN45867.1| (hypothetical protein Csa_6G014870 [Cucumis sativus])

HSP 1 Score: 207.2 bits (526), Expect = 1.3e-50
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 1 

Query: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60
          MGGNRQKKSHSSFSIFSFFKS+RGRKGDHYDHGGAW DEMPRSNKVWPSDEDKAHHW+AE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 99
          PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]
BLAST of Csa6G014900 vs. NCBI nr
Match: gi|700190665|gb|KGN45869.1| (hypothetical protein Csa_6G014890 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 4.5e-43
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 1 

Query: 2  GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61
          G NRQKK+H+SFSIFSFFKS+RGRKGDH +H G+  DEMPRS KVWPSDEDKAHHW+AEP
Sbjct: 3  GNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 99
          GIDRKAKDYIDRIYRNRVFESERQTVTISPNG KSNV
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]
BLAST of Csa6G014900 vs. NCBI nr
Match: gi|700190664|gb|KGN45868.1| (hypothetical protein Csa_6G014880 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 5.1e-39
Identity = 77/92 (83.70%), Postives = 81/92 (88.04%), Query Frame = 1 

Query: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60
          MGG++ KKSHSSFS FSF KSK  RKGDHYDHGG+W DE  RS KVWPSDEDKAHHW+AE
Sbjct: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPN 93
          PGIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92

[Close]
BLAST of Csa6G014900 vs. NCBI nr
Match: gi|700190669|gb|KGN45873.1| (hypothetical protein Csa_6G016905 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 2.8e-37
Identity = 76/97 (78.35%), Postives = 85/97 (87.63%), Query Frame = 1 

Query: 2  GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61
          G +RQKK+HSSFSIFSFFKSKRGRKGD Y+HG  W D +P S+KVWPSDEDK + W+AEP
Sbjct: 3  GSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWED-VPSSSKVWPSDEDKGYRWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 99
          GIDRKAKDYIDRIY+NRVFE+ERQTVTI PNG  SNV
Sbjct: 63 GIDRKAKDYIDRIYKNRVFETERQTVTIHPNGPNSNV 98

The following BLAST results are available for this feature:
BLAST of Csa6G014900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7Y2_CUCSA2.2e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1[more]
A0A0A0KBW1_CUCSA9.0e-5196.94Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1[more]
A0A0A0KAK6_CUCSA3.1e-4386.60Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1[more]
A0A0A0K8V3_CUCSA3.6e-3983.70Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1[more]
A0A0A0K8W0_CUCSA2.0e-3778.35Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1[more]
BLAST of Csa6G014900 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G05858.11.2e-1445.45 unknown protein[more]
AT5G26620.11.2e-0947.62 unknown protein[more]
BLAST of Csa6G014900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190666|gb|KGN45870.1|3.1e-52100.00hypothetical protein Csa_6G014900 [Cucumis sativus][more]
gi|700190663|gb|KGN45867.1|1.3e-5096.94hypothetical protein Csa_6G014870 [Cucumis sativus][more]
gi|700190665|gb|KGN45869.1|4.5e-4386.60hypothetical protein Csa_6G014890 [Cucumis sativus][more]
gi|700190664|gb|KGN45868.1|5.1e-3983.70hypothetical protein Csa_6G014880 [Cucumis sativus][more]
gi|700190669|gb|KGN45873.1|2.8e-3778.35hypothetical protein Csa_6G016905 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU092410cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G014900.1Csa6G014900.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU092410CU092410transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33511FAMILY NOT NAMEDcoord: 1..87
score: 3.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G014900Melon (DHL92) v3.6.1cumedB455
Csa6G014900Watermelon (97103) v2cuwmbB490
Csa6G014900Wax gourdcuwgoB589
Csa6G014900Cucumber (Gy14) v1cgycuB511
Csa6G014900Cucurbita maxima (Rimu)cmacuB032
Csa6G014900Cucurbita maxima (Rimu)cmacuB485
Csa6G014900Cucurbita moschata (Rifu)cmocuB022
Csa6G014900Cucurbita moschata (Rifu)cmocuB473
Csa6G014900Melon (DHL92) v3.5.1cumeB415
Csa6G014900Watermelon (Charleston Gray)cuwcgB500
Csa6G014900Watermelon (97103) v1cuwmB475
Csa6G014900Cucurbita pepo (Zucchini)cpecuB584
Csa6G014900Bottle gourd (USVL1VR-Ls)culsiB471
Csa6G014900Cucumber (Gy14) v2cgybcuB282