Csa6G000070 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G000070
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 40882 .. 41290 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATACTTACTCCTGAAGACAAGATTCACAAACCAAAGCTTGTTTTTGAGAAGGTAGTTCTATTTTCATTGCTTGTATTTTCAGAAGGTATTCCTTTTTCACTTTTCAATTCTTATCGTTATAGAGTGCATATTTGGTTTCCAAGTCTTTTACCCCCACATATTTAACCCATAGCATGACTTGAACCATTATGTGACATTGTGTACAGGAGCTCCAAAATTCTCATGGTTTTACCTCCACCCATTCAATTTCTACTCATAGGTTTATTTATTGTATACTATTCTAGGCAGAGACGAGATGGTTGAGATGTTCAGGCAAAGAATAGCTCAAGCAATGGCTCTTGCAGGCGGCCTTCTCGGATTTCATCCGAAGTTACTTATTAGTTATTTGTTTGTCATGGAGGTTTGA

mRNA sequence

ATGATACTTACTCCTGAAGACAAGATTCACAAACCAAAGCTTGTTTTTGAGAAGGTAGTTCTATTTTCATTGCTTGTATTTTCAGAAGGCAGAGACGAGATGGTTGAGATGTTCAGGCAAAGAATAGCTCAAGCAATGGCTCTTGCAGGCGGCCTTCTCGGATTTCATCCGAAGTTACTTATTAGTTATTTGTTTGTCATGGAGGTTTGA

Coding sequence (CDS)

ATGATACTTACTCCTGAAGACAAGATTCACAAACCAAAGCTTGTTTTTGAGAAGGTAGTTCTATTTTCATTGCTTGTATTTTCAGAAGGCAGAGACGAGATGGTTGAGATGTTCAGGCAAAGAATAGCTCAAGCAATGGCTCTTGCAGGCGGCCTTCTCGGATTTCATCCGAAGTTACTTATTAGTTATTTGTTTGTCATGGAGGTTTGA

Protein sequence

MILTPEDKIHKPKLVFEKVVLFSLLVFSEGRDEMVEMFRQRIAQAMALAGGLLGFHPKLLISYLFVMEV*
Homology
[Close]
BLAST of Csa6G000070 vs. TrEMBL
Match: A0A0A0KB49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G000070 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.4e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MILTPEDKIHKPKLVFEKVVLFSLLVFSEGRDEMVEMFRQRIAQAMALAGGLLGFHPKLL 60
          MILTPEDKIHKPKLVFEKVVLFSLLVFSEGRDEMVEMFRQRIAQAMALAGGLLGFHPKLL
Sbjct: 1  MILTPEDKIHKPKLVFEKVVLFSLLVFSEGRDEMVEMFRQRIAQAMALAGGLLGFHPKLL 60

Query: 61 ISYLFVMEV 70
          ISYLFVMEV
Sbjct: 61 ISYLFVMEV 69

[Close]
BLAST of Csa6G000070 vs. NCBI nr
Match: gi|700190403|gb|KGN45607.1| (hypothetical protein Csa_6G000070 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MILTPEDKIHKPKLVFEKVVLFSLLVFSEGRDEMVEMFRQRIAQAMALAGGLLGFHPKLL 60
          MILTPEDKIHKPKLVFEKVVLFSLLVFSEGRDEMVEMFRQRIAQAMALAGGLLGFHPKLL
Sbjct: 1  MILTPEDKIHKPKLVFEKVVLFSLLVFSEGRDEMVEMFRQRIAQAMALAGGLLGFHPKLL 60

Query: 61 ISYLFVMEV 70
          ISYLFVMEV
Sbjct: 61 ISYLFVMEV 69

The following BLAST results are available for this feature:
BLAST of Csa6G000070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KB49_CUCSA1.4e-29100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G000070 PE=4 SV=1[more]
BLAST of Csa6G000070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190403|gb|KGN45607.1|2.0e-29100.00hypothetical protein Csa_6G000070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G000070.1Csa6G000070.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G000070CSPI06G00040Wild cucumber (PI 183967)cpicuB314
Csa6G000070CsGy6G000050Cucumber (Gy14) v2cgybcuB282
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G000070Melon (DHL92) v3.6.1cumedB404
Csa6G000070Silver-seed gourdcarcuB0073
Csa6G000070Watermelon (97103) v2cuwmbB472
Csa6G000070Wax gourdcuwgoB535
Csa6G000070Cucumber (Gy14) v1cgycuB195
Csa6G000070Cucurbita maxima (Rimu)cmacuB368
Csa6G000070Cucurbita moschata (Rifu)cmocuB357
Csa6G000070Melon (DHL92) v3.5.1cumeB422
Csa6G000070Watermelon (Charleston Gray)cuwcgB480
Csa6G000070Watermelon (97103) v1cuwmB546
Csa6G000070Cucurbita pepo (Zucchini)cpecuB141
Csa6G000070Bottle gourd (USVL1VR-Ls)culsiB394