CSPI06G00040 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G00040
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 43964 .. 44372 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATACTTACTCCTGAAGACAAGATTCACAAACCAAAGCTTGTTTTTGAGAAGGTAGTTCTATTTTCATTGCTTGTATTTTCAGAAGGTATTCCTTTTTCACTTTTCAATTCTTATCGTTATAGAGTGCATATTTGGTTTCCAAGTCTTTTACCCCCACATATTTAACCCATAGCATGACTTGAACCATTATATGACATTGTGTACAGGAGCTCCAAAATTCTCATGGTTTTACCTCCACCCATTCAATTTCTACTCATAGGTTTATTTATTGTATACTATTCTAGGCAGAGACGAGATGGTTGAGATGTTCAGGCAAAGAATAGCTCAAGCAATGGCTCTTGCAGGCGGCCTTCTCGGATTTCATCCGAAGTTACTTATTAGTTATTTGTTTGTCATGGAGGTTTGA

mRNA sequence

ATGATACTTACTCCTGAAGACAAGATTCACAAACCAAAGCTTGTTTTTGAGAAGGTAGTTCTATTTTCATTGCTTGTATTTTCAGAAGGCAGAGACGAGATGGTTGAGATGTTCAGGCAAAGAATAGCTCAAGCAATGGCTCTTGCAGGCGGCCTTCTCGGATTTCATCCGAAGTTACTTATTAGTTATTTGTTTGTCATGGAGGTTTGA

Coding sequence (CDS)

ATGATACTTACTCCTGAAGACAAGATTCACAAACCAAAGCTTGTTTTTGAGAAGGTAGTTCTATTTTCATTGCTTGTATTTTCAGAAGGCAGAGACGAGATGGTTGAGATGTTCAGGCAAAGAATAGCTCAAGCAATGGCTCTTGCAGGCGGCCTTCTCGGATTTCATCCGAAGTTACTTATTAGTTATTTGTTTGTCATGGAGGTTTGA
Homology
[Close]
BLAST of CSPI06G00040 vs. TrEMBL
Match: A0A0A0KB49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G000070 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.8e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MILTPEDKIHKPKLVFEKVVLFSLLVFSEGRDEMVEMFRQRIAQAMALAGGLLGFHPKLL 60
          MILTPEDKIHKPKLVFEKVVLFSLLVFSEGRDEMVEMFRQRIAQAMALAGGLLGFHPKLL
Sbjct: 1  MILTPEDKIHKPKLVFEKVVLFSLLVFSEGRDEMVEMFRQRIAQAMALAGGLLGFHPKLL 60

Query: 61 ISYLFVMEV 70
          ISYLFVMEV
Sbjct: 61 ISYLFVMEV 69

[Close]
BLAST of CSPI06G00040 vs. NCBI nr
Match: gi|700190403|gb|KGN45607.1| (hypothetical protein Csa_6G000070 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 2.6e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MILTPEDKIHKPKLVFEKVVLFSLLVFSEGRDEMVEMFRQRIAQAMALAGGLLGFHPKLL 60
          MILTPEDKIHKPKLVFEKVVLFSLLVFSEGRDEMVEMFRQRIAQAMALAGGLLGFHPKLL
Sbjct: 1  MILTPEDKIHKPKLVFEKVVLFSLLVFSEGRDEMVEMFRQRIAQAMALAGGLLGFHPKLL 60

Query: 61 ISYLFVMEV 70
          ISYLFVMEV
Sbjct: 61 ISYLFVMEV 69

The following BLAST results are available for this feature:
BLAST of CSPI06G00040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G00040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KB49_CUCSA1.8e-29100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G000070 PE=4 SV=1[more]
BLAST of CSPI06G00040 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G00040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190403|gb|KGN45607.1|2.6e-29100.00hypothetical protein Csa_6G000070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G00040.1CSPI06G00040.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G00040Csa6G000070Cucumber (Chinese Long) v2cpicuB314
CSPI06G00040CsaV3_6G000040Cucumber (Chinese Long) v3cpicucB364
CSPI06G00040CsGy6G000050Cucumber (Gy14) v2cgybcpiB288
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G00040Watermelon (97103) v2cpiwmbB499
CSPI06G00040Wax gourdcpiwgoB540
CSPI06G00040Cucumber (Gy14) v1cgycpiB198
CSPI06G00040Cucurbita maxima (Rimu)cmacpiB372
CSPI06G00040Cucurbita moschata (Rifu)cmocpiB360
CSPI06G00040Melon (DHL92) v3.5.1cpimeB418
CSPI06G00040Watermelon (Charleston Gray)cpiwcgB507
CSPI06G00040Watermelon (97103) v1cpiwmB565
CSPI06G00040Cucurbita pepo (Zucchini)cpecpiB143
CSPI06G00040Bottle gourd (USVL1VR-Ls)cpilsiB397
CSPI06G00040Melon (DHL92) v3.6.1cpimedB413
CSPI06G00040Silver-seed gourdcarcpiB0077