Csa5G598620 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G598620
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 21737664 .. 21739004 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTCGGTCCTATTTCGTTTTGCAGCCGTAGCTATTGTGATGGTGAGTTTCTTCGTCGAAATATCAGAATCCATTCCCATCTTGCATTACAGCTTCCATTTCCATTAGGTCCGTCCATCACACGTTTTTCCTCTCCGCCAGTAAGAGTTTAGCAAATTCCACTCATGGAGTATCCGTAGTTTTAGGTCTGATTGTTGCATTACAGCTTGTGCATAACACGCAATTTTTACTCTGGCACAAATGGCTTCATTATTGGTTCTTATTTCCTTCACTCTTTTGAAAACCTTAGTTTTAATAACTTTTACACATTCGTTTTTTAAAATAGGATTATGAATGTTGTATGGTGGATTCCAGTTTCCATTGTCTTTGATTAAATGATGGATTATATAGTCTTTTTTATTGGATGTCTATCTTACAAATCTGATTTTGCAGGATTTAAGAGACGATTCCATTGGACCAACCTAAAAGTTCGAGACGACAAGGAACTACAGCTGCACTTCAGCAATTGGATGTAAGATCTCCATCCTTGCCTAACTAAAATGATCATTGAAATATGCGTGTGTGTTGCGTGTTTATAACTGTTGGTTTCTTTTAGGTCTTCTAACATTAGTTCAATTAGTCTTACATCACTGATCTTTGCTGTAGGCTATATTTGTATATATAATTTAATATGTCAGATCATGTAATCTAAAATTCATGTGTTATTTCAACTTTACCCTTAGGCTTAACTTGTTGGATCAAACAATGAATTAAATGTATGGGCACTTGTTCACTGATGTTTAGCTCCTTTAAGGCCCTATAGCATAGTCCTAACCCCTCAATTGTCGGTTCTTTTAATCCTCTTACACTTGTTTATATCACCACTTCAACGTTACATCGTTTTCTTGATGAAAAGTTCACAAGTCCTGTTCAAGGCGACATAAATTTTATATTTGAAATATGAAGGTCCAGGAAAATGAAGGCATATATTGTTTATATTTGAATTCTATCATTAACTTCATAACATGTTAGGTACATGTGGAGATAATCTGCTATTGTCAGAAACAGAGATCTCTTCGGCCAATTTGCTCTGTTTTCTGTAGCAAGAGTTTCTTTCACAATTCACAGGTATTCCTCTATTCTTTCCCTCTCATTTTTAATGAAATAAGACAAGATCATACTCTGGGAAGTTTTGGGTGGAAGAACATTTAAAATTAAAGACCTCAAATCTGGTAGTATTAGGAGCAAGTTGCAGCCTATGGAGATTGGTTTGTTTCTGTATTTGGAGATTGGATCCATTCCCTGAACTTGAAAATTTGAGGAAAAGTCCAAAAGTGGACAGCAAGGACTATGGTTGA

mRNA sequence

ATGAAATTCGGTCCTATTTCGTTTTGCAGCCGTAGCTATTGTGATGGTGAGTTTCTTCGTCGAAATATCAGAATCCATTCCCATCTTGCATTACAGCTTCCATTTCCATTAGGTCCGTCCATCACACAGACGATTCCATTGGACCAACCTAAAAGTTCGAGACGACAAGGAACTACAGCTGCACTTCAGCAATTGGATGTACATGTGGAGATAATCTGCTATTGTCAGAAACAGAGATCTCTTCGGCCAATTTGCTCTGTTTTCTGTAGCAAGAGTTTCTTTCACAATTCACAGACAAGATCATACTCTGGGAAGTTTTGGGTGGAAGAACATTTAAAATTAAAGACCTCAAATCTGGTAGTATTAGGAGCAAGTTGCAGCCTATGGAGATTGGTTTGTTTCTGTATTTGGAGATTGGATCCATTCCCTGAACTTGAAAATTTGAGGAAAAGTCCAAAAGTGGACAGCAAGGACTATGGTTGA

Coding sequence (CDS)

ATGAAATTCGGTCCTATTTCGTTTTGCAGCCGTAGCTATTGTGATGGTGAGTTTCTTCGTCGAAATATCAGAATCCATTCCCATCTTGCATTACAGCTTCCATTTCCATTAGGTCCGTCCATCACACAGACGATTCCATTGGACCAACCTAAAAGTTCGAGACGACAAGGAACTACAGCTGCACTTCAGCAATTGGATGTACATGTGGAGATAATCTGCTATTGTCAGAAACAGAGATCTCTTCGGCCAATTTGCTCTGTTTTCTGTAGCAAGAGTTTCTTTCACAATTCACAGACAAGATCATACTCTGGGAAGTTTTGGGTGGAAGAACATTTAAAATTAAAGACCTCAAATCTGGTAGTATTAGGAGCAAGTTGCAGCCTATGGAGATTGGTTTGTTTCTGTATTTGGAGATTGGATCCATTCCCTGAACTTGAAAATTTGAGGAAAAGTCCAAAAGTGGACAGCAAGGACTATGGTTGA

Protein sequence

MKFGPISFCSRSYCDGEFLRRNIRIHSHLALQLPFPLGPSITQTIPLDQPKSSRRQGTTAALQQLDVHVEIICYCQKQRSLRPICSVFCSKSFFHNSQTRSYSGKFWVEEHLKLKTSNLVVLGASCSLWRLVCFCIWRLDPFPELENLRKSPKVDSKDYG*
Homology
[Close]
BLAST of Csa5G598620 vs. TrEMBL
Match: A0A0A0KS70_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598620 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 5.5e-90
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1 

Query: 1   MKFGPISFCSRSYCDGEFLRRNIRIHSHLALQLPFPLGPSITQTIPLDQPKSSRRQGTTA 60
           MKFGPISFCSRSYCDGEFLRRNIRIHSHLALQLPFPLGPSITQTIPLDQPKSSRRQGTTA
Sbjct: 1   MKFGPISFCSRSYCDGEFLRRNIRIHSHLALQLPFPLGPSITQTIPLDQPKSSRRQGTTA 60

Query: 61  ALQQLDVHVEIICYCQKQRSLRPICSVFCSKSFFHNSQTRSYSGKFWVEEHLKLKTSNLV 120
           ALQQLDVHVEIICYCQKQRSLRPICSVFCSKSFFHNSQTRSYSGKFWVEEHLKLKTSNLV
Sbjct: 61  ALQQLDVHVEIICYCQKQRSLRPICSVFCSKSFFHNSQTRSYSGKFWVEEHLKLKTSNLV 120

Query: 121 VLGASCSLWRLVCFCIWRLDPFPELENLRKSPKVDSKDYG 161
           VLGASCSLWRLVCFCIWRLDPFPELENLRKSPKVDSKDYG
Sbjct: 121 VLGASCSLWRLVCFCIWRLDPFPELENLRKSPKVDSKDYG 160

[Close]
BLAST of Csa5G598620 vs. NCBI nr
Match: gi|700196577|gb|KGN51754.1| (hypothetical protein Csa_5G598620 [Cucumis sativus])

HSP 1 Score: 338.2 bits (866), Expect = 7.9e-90
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1 

Query: 1   MKFGPISFCSRSYCDGEFLRRNIRIHSHLALQLPFPLGPSITQTIPLDQPKSSRRQGTTA 60
           MKFGPISFCSRSYCDGEFLRRNIRIHSHLALQLPFPLGPSITQTIPLDQPKSSRRQGTTA
Sbjct: 1   MKFGPISFCSRSYCDGEFLRRNIRIHSHLALQLPFPLGPSITQTIPLDQPKSSRRQGTTA 60

Query: 61  ALQQLDVHVEIICYCQKQRSLRPICSVFCSKSFFHNSQTRSYSGKFWVEEHLKLKTSNLV 120
           ALQQLDVHVEIICYCQKQRSLRPICSVFCSKSFFHNSQTRSYSGKFWVEEHLKLKTSNLV
Sbjct: 61  ALQQLDVHVEIICYCQKQRSLRPICSVFCSKSFFHNSQTRSYSGKFWVEEHLKLKTSNLV 120

Query: 121 VLGASCSLWRLVCFCIWRLDPFPELENLRKSPKVDSKDYG 161
           VLGASCSLWRLVCFCIWRLDPFPELENLRKSPKVDSKDYG
Sbjct: 121 VLGASCSLWRLVCFCIWRLDPFPELENLRKSPKVDSKDYG 160

The following BLAST results are available for this feature:
BLAST of Csa5G598620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KS70_CUCSA5.5e-90100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598620 PE=4 SV=1[more]
BLAST of Csa5G598620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196577|gb|KGN51754.1|7.9e-90100.00hypothetical protein Csa_5G598620 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU084708cucumber EST collection version 3.0transcribed_cluster
CU101198cucumber EST collection version 3.0transcribed_cluster
CU127776cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G598620.1Csa5G598620.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU101198CU101198transcribed_cluster
CU127776CU127776transcribed_cluster
CU084708CU084708transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G598620Cla97C05G107990Watermelon (97103) v2cuwmbB383
Csa5G598620CSPI05G22250Wild cucumber (PI 183967)cpicuB239
Csa5G598620CmaCh04G017680Cucurbita maxima (Rimu)cmacuB749
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G598620Wax gourdcuwgoB490
Csa5G598620Wax gourdcuwgoB512
Csa5G598620Cucumber (Chinese Long) v2cucuB064
Csa5G598620Cucumber (Gy14) v1cgycuB410
Csa5G598620Cucumber (Gy14) v1cgycuB551
Csa5G598620Cucurbita maxima (Rimu)cmacuB190
Csa5G598620Cucurbita maxima (Rimu)cmacuB413
Csa5G598620Cucurbita maxima (Rimu)cmacuB803
Csa5G598620Cucurbita moschata (Rifu)cmocuB402
Csa5G598620Cucurbita moschata (Rifu)cmocuB739
Csa5G598620Cucurbita moschata (Rifu)cmocuB793
Csa5G598620Melon (DHL92) v3.5.1cumeB377
Csa5G598620Melon (DHL92) v3.5.1cumeB386
Csa5G598620Melon (DHL92) v3.5.1cumeB393
Csa5G598620Watermelon (Charleston Gray)cuwcgB394
Csa5G598620Watermelon (Charleston Gray)cuwcgB411
Csa5G598620Watermelon (97103) v1cuwmB376
Csa5G598620Watermelon (97103) v1cuwmB401
Csa5G598620Cucurbita pepo (Zucchini)cpecuB047
Csa5G598620Cucurbita pepo (Zucchini)cpecuB118
Csa5G598620Cucurbita pepo (Zucchini)cpecuB440
Csa5G598620Bottle gourd (USVL1VR-Ls)culsiB368
Csa5G598620Bottle gourd (USVL1VR-Ls)culsiB388
Csa5G598620Cucumber (Gy14) v2cgybcuB076
Csa5G598620Cucumber (Gy14) v2cgybcuB223
Csa5G598620Melon (DHL92) v3.6.1cumedB359
Csa5G598620Melon (DHL92) v3.6.1cumedB376
Csa5G598620Silver-seed gourdcarcuB0271
Csa5G598620Silver-seed gourdcarcuB0530
Csa5G598620Silver-seed gourdcarcuB0648
Csa5G598620Silver-seed gourdcarcuB0743
Csa5G598620Watermelon (97103) v2cuwmbB400