Csa5G598620.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa5G598620.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 21737664 .. 21739004 (-)
Sequence length483
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTCGGTCCTATTTCGTTTTGCAGCCGTAGCTATTGTGATGGTGAGTTTCTTCGTCGAAATATCAGAATCCATTCCCATCTTGCATTACAGCTTCCATTTCCATTAGGTCCGTCCATCACACGTTTTTCCTCTCCGCCAGTAAGAGTTTAGCAAATTCCACTCATGGAGTATCCGTAGTTTTAGGTCTGATTGTTGCATTACAGCTTGTGCATAACACGCAATTTTTACTCTGGCACAAATGGCTTCATTATTGGTTCTTATTTCCTTCACTCTTTTGAAAACCTTAGTTTTAATAACTTTTACACATTCGTTTTTTAAAATAGGATTATGAATGTTGTATGGTGGATTCCAGTTTCCATTGTCTTTGATTAAATGATGGATTATATAGTCTTTTTTATTGGATGTCTATCTTACAAATCTGATTTTGCAGGATTTAAGAGACGATTCCATTGGACCAACCTAAAAGTTCGAGACGACAAGGAACTACAGCTGCACTTCAGCAATTGGATGTAAGATCTCCATCCTTGCCTAACTAAAATGATCATTGAAATATGCGTGTGTGTTGCGTGTTTATAACTGTTGGTTTCTTTTAGGTCTTCTAACATTAGTTCAATTAGTCTTACATCACTGATCTTTGCTGTAGGCTATATTTGTATATATAATTTAATATGTCAGATCATGTAATCTAAAATTCATGTGTTATTTCAACTTTACCCTTAGGCTTAACTTGTTGGATCAAACAATGAATTAAATGTATGGGCACTTGTTCACTGATGTTTAGCTCCTTTAAGGCCCTATAGCATAGTCCTAACCCCTCAATTGTCGGTTCTTTTAATCCTCTTACACTTGTTTATATCACCACTTCAACGTTACATCGTTTTCTTGATGAAAAGTTCACAAGTCCTGTTCAAGGCGACATAAATTTTATATTTGAAATATGAAGGTCCAGGAAAATGAAGGCATATATTGTTTATATTTGAATTCTATCATTAACTTCATAACATGTTAGGTACATGTGGAGATAATCTGCTATTGTCAGAAACAGAGATCTCTTCGGCCAATTTGCTCTGTTTTCTGTAGCAAGAGTTTCTTTCACAATTCACAGGTATTCCTCTATTCTTTCCCTCTCATTTTTAATGAAATAAGACAAGATCATACTCTGGGAAGTTTTGGGTGGAAGAACATTTAAAATTAAAGACCTCAAATCTGGTAGTATTAGGAGCAAGTTGCAGCCTATGGAGATTGGTTTGTTTCTGTATTTGGAGATTGGATCCATTCCCTGAACTTGAAAATTTGAGGAAAAGTCCAAAAGTGGACAGCAAGGACTATGGTTGA

mRNA sequence

ATGAAATTCGGTCCTATTTCGTTTTGCAGCCGTAGCTATTGTGATGGTGAGTTTCTTCGTCGAAATATCAGAATCCATTCCCATCTTGCATTACAGCTTCCATTTCCATTAGGTCCGTCCATCACACAGACGATTCCATTGGACCAACCTAAAAGTTCGAGACGACAAGGAACTACAGCTGCACTTCAGCAATTGGATGTACATGTGGAGATAATCTGCTATTGTCAGAAACAGAGATCTCTTCGGCCAATTTGCTCTGTTTTCTGTAGCAAGAGTTTCTTTCACAATTCACAGACAAGATCATACTCTGGGAAGTTTTGGGTGGAAGAACATTTAAAATTAAAGACCTCAAATCTGGTAGTATTAGGAGCAAGTTGCAGCCTATGGAGATTGGTTTGTTTCTGTATTTGGAGATTGGATCCATTCCCTGAACTTGAAAATTTGAGGAAAAGTCCAAAAGTGGACAGCAAGGACTATGGTTGA

Coding sequence (CDS)

ATGAAATTCGGTCCTATTTCGTTTTGCAGCCGTAGCTATTGTGATGGTGAGTTTCTTCGTCGAAATATCAGAATCCATTCCCATCTTGCATTACAGCTTCCATTTCCATTAGGTCCGTCCATCACACAGACGATTCCATTGGACCAACCTAAAAGTTCGAGACGACAAGGAACTACAGCTGCACTTCAGCAATTGGATGTACATGTGGAGATAATCTGCTATTGTCAGAAACAGAGATCTCTTCGGCCAATTTGCTCTGTTTTCTGTAGCAAGAGTTTCTTTCACAATTCACAGACAAGATCATACTCTGGGAAGTTTTGGGTGGAAGAACATTTAAAATTAAAGACCTCAAATCTGGTAGTATTAGGAGCAAGTTGCAGCCTATGGAGATTGGTTTGTTTCTGTATTTGGAGATTGGATCCATTCCCTGAACTTGAAAATTTGAGGAAAAGTCCAAAAGTGGACAGCAAGGACTATGGTTGA

Protein sequence

MKFGPISFCSRSYCDGEFLRRNIRIHSHLALQLPFPLGPSITQTIPLDQPKSSRRQGTTAALQQLDVHVEIICYCQKQRSLRPICSVFCSKSFFHNSQTRSYSGKFWVEEHLKLKTSNLVVLGASCSLWRLVCFCIWRLDPFPELENLRKSPKVDSKDYG*
Homology
[Close]
BLAST of Csa5G598620.1 vs. TrEMBL
Match: A0A0A0KS70_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598620 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 5.5e-90
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1 

Query: 1   MKFGPISFCSRSYCDGEFLRRNIRIHSHLALQLPFPLGPSITQTIPLDQPKSSRRQGTTA 60
           MKFGPISFCSRSYCDGEFLRRNIRIHSHLALQLPFPLGPSITQTIPLDQPKSSRRQGTTA
Sbjct: 1   MKFGPISFCSRSYCDGEFLRRNIRIHSHLALQLPFPLGPSITQTIPLDQPKSSRRQGTTA 60

Query: 61  ALQQLDVHVEIICYCQKQRSLRPICSVFCSKSFFHNSQTRSYSGKFWVEEHLKLKTSNLV 120
           ALQQLDVHVEIICYCQKQRSLRPICSVFCSKSFFHNSQTRSYSGKFWVEEHLKLKTSNLV
Sbjct: 61  ALQQLDVHVEIICYCQKQRSLRPICSVFCSKSFFHNSQTRSYSGKFWVEEHLKLKTSNLV 120

Query: 121 VLGASCSLWRLVCFCIWRLDPFPELENLRKSPKVDSKDYG 161
           VLGASCSLWRLVCFCIWRLDPFPELENLRKSPKVDSKDYG
Sbjct: 121 VLGASCSLWRLVCFCIWRLDPFPELENLRKSPKVDSKDYG 160

[Close]
BLAST of Csa5G598620.1 vs. NCBI nr
Match: gi|700196577|gb|KGN51754.1| (hypothetical protein Csa_5G598620 [Cucumis sativus])

HSP 1 Score: 338.2 bits (866), Expect = 7.9e-90
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1 

Query: 1   MKFGPISFCSRSYCDGEFLRRNIRIHSHLALQLPFPLGPSITQTIPLDQPKSSRRQGTTA 60
           MKFGPISFCSRSYCDGEFLRRNIRIHSHLALQLPFPLGPSITQTIPLDQPKSSRRQGTTA
Sbjct: 1   MKFGPISFCSRSYCDGEFLRRNIRIHSHLALQLPFPLGPSITQTIPLDQPKSSRRQGTTA 60

Query: 61  ALQQLDVHVEIICYCQKQRSLRPICSVFCSKSFFHNSQTRSYSGKFWVEEHLKLKTSNLV 120
           ALQQLDVHVEIICYCQKQRSLRPICSVFCSKSFFHNSQTRSYSGKFWVEEHLKLKTSNLV
Sbjct: 61  ALQQLDVHVEIICYCQKQRSLRPICSVFCSKSFFHNSQTRSYSGKFWVEEHLKLKTSNLV 120

Query: 121 VLGASCSLWRLVCFCIWRLDPFPELENLRKSPKVDSKDYG 161
           VLGASCSLWRLVCFCIWRLDPFPELENLRKSPKVDSKDYG
Sbjct: 121 VLGASCSLWRLVCFCIWRLDPFPELENLRKSPKVDSKDYG 160

The following BLAST results are available for this feature:
BLAST of Csa5G598620.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KS70_CUCSA5.5e-90100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598620 PE=4 SV=1[more]
BLAST of Csa5G598620.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196577|gb|KGN51754.1|7.9e-90100.00hypothetical protein Csa_5G598620 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa5G598620Csa5G598620gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa5G598620.1Csa5G598620.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa5G598620.1.cds4Csa5G598620.1.cds4CDS
Csa5G598620.1.cds3Csa5G598620.1.cds3CDS
Csa5G598620.1.cds2Csa5G598620.1.cds2CDS
Csa5G598620.1.cds1Csa5G598620.1.cds1CDS