Csa5G528430 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G528430
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 18828455 .. 18828688 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGTTATATGTCTAAAACATCTTTGATGATTGCAAAGCCAATGATAAAAAGTGGTTTCCAAATGACCAAGGGCTTAGGAAAGAATAATCAAGGAGGTTCTGAATTGTTCTCTCTTCCTAAAGCCAAGGAGAAGTTCGGGCTGGGCTTTAAGCCAATGGCTTTTGATTGGGAGAAGGTTCGAGCAAAAAAAAAGAAAAAAGAAACGCACGACTTGAGGGATGCGAAATGA

mRNA sequence

ATGGATCGTTATATGTCTAAAACATCTTTGATGATTGCAAAGCCAATGATAAAAAGTGGTTTCCAAATGACCAAGGGCTTAGGAAAGAATAATCAAGGAGGTTCTGAATTGTTCTCTCTTCCTAAAGCCAAGGAGAAGTTCGGGCTGGGCTTTAAGCCAATGGCTTTTGATTGGGAGAAGGTTCGAGCAAAAAAAAAGAAAAAAGAAACGCACGACTTGAGGGATGCGAAATGA

Coding sequence (CDS)

ATGGATCGTTATATGTCTAAAACATCTTTGATGATTGCAAAGCCAATGATAAAAAGTGGTTTCCAAATGACCAAGGGCTTAGGAAAGAATAATCAAGGAGGTTCTGAATTGTTCTCTCTTCCTAAAGCCAAGGAGAAGTTCGGGCTGGGCTTTAAGCCAATGGCTTTTGATTGGGAGAAGGTTCGAGCAAAAAAAAAGAAAAAAGAAACGCACGACTTGAGGGATGCGAAATGA

Protein sequence

MDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFDWEKVRAKKKKKETHDLRDAK*

Homology

[Close]

BLAST of Csa5G528430 vs. TrEMBL
Match: A0A0A0KUJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528430 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.2e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1  MDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFDWEK 60
          MDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFDWEK
Sbjct: 1  MDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFDWEK 60

Query: 61 VRAKKKKKETHDLRDAK 78
          VRAKKKKKETHDLRDAK
Sbjct: 61 VRAKKKKKETHDLRDAK 77

[Close]

BLAST of Csa5G528430 vs. NCBI nr
Match: gi|700196229|gb|KGN51406.1| (hypothetical protein Csa_5G528430 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 3.2e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1  MDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFDWEK 60
          MDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFDWEK
Sbjct: 1  MDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFDWEK 60

Query: 61 VRAKKKKKETHDLRDAK 78
          VRAKKKKKETHDLRDAK
Sbjct: 61 VRAKKKKKETHDLRDAK 77

[Close]

BLAST of Csa5G528430 vs. NCBI nr
Match: gi|828333967|ref|XP_012575064.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101491528 [Cicer arietinum])

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-06
Identity = 29/69 (42.03%), Postives = 46/69 (66.67%), Query Frame = 1


Query: 1    MDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSELFSLPKAKEKFGLGFKPMAFD-WE 60
            ++ +MS T++M+AK M+  G     GLGK+ +G  EL  LP+ ++K+GLG+KP   D W 
Sbjct: 1057 IEPHMSNTAIMVAKFMLSRGHHPWHGLGKDEEGLKELVELPENRDKWGLGYKPTRDDKWR 1116

Query: 61   KVRAKKKKK 69
             V+ KK+K+
Sbjct: 1117 LVKEKKEKR 1125

[Close]

BLAST of Csa5G528430 vs. NCBI nr
Match: gi|828333967|ref|XP_012575064.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101491528 [Cicer arietinum])

HSP 1 Score: 32.0 bits (71), Expect = 5.9e+02
Identity = 14/36 (38.89%), Postives = 23/36 (63.89%), Query Frame = 1


Query: 1    MDRYMSKTSLMIAKPMIKSGFQMTKGLGKNNQGGSE 37
            ++ +MS T++M+AK M+  G     GLGK+ +G  E
Sbjct: 978  IEPHMSNTAIMVAKFMLSRGHHPWHGLGKDEEGHRE 1013

The following BLAST results are available for this feature:

BLAST of Csa5G528430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUJ7_CUCSA	2.2e-36	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528430 PE=4 SV=1	[more]

BLAST of Csa5G528430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196229\|gb\|KGN51406.1\|	3.2e-36	100.00	hypothetical protein Csa_5G528430 [Cucumis sativus]	[more]
gi\|828333967\|ref\|XP_012575064.1\|	1.5e-06	42.03	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101491528 [Cicer arie...	[more]
gi\|828333967\|ref\|XP_012575064.1\|	5.9e+02	38.89	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101491528 [Cicer arie...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0090304	nucleic acid metabolic process
biological_process	GO:0051252	regulation of RNA metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G528430.1	Csa5G528430.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G528430	Cucsa.011650	Cucumber (Gy14) v1	cgycuB286
Csa5G528430	CsGy5G018260	Cucumber (Gy14) v2	cgybcuB223

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G528430	Cucurbita maxima (Rimu)	cmacuB759
Csa5G528430	Cucurbita moschata (Rifu)	cmocuB752
Csa5G528430	Melon (DHL92) v3.5.1	cumeB380
Csa5G528430	Watermelon (Charleston Gray)	cuwcgB360
Csa5G528430	Watermelon (97103) v1	cuwmB435
Csa5G528430	Cucurbita pepo (Zucchini)	cpecuB453
Csa5G528430	Bottle gourd (USVL1VR-Ls)	culsiB337
Csa5G528430	Melon (DHL92) v3.6.1	cumedB363
Csa5G528430	Watermelon (97103) v2	cuwmbB364