Csa5G381840 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G381840
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein; contains IPR008502 (Prolamin-like domain)
Location	Chr5 : 14140784 .. 14141185 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACTCGACTCGAGTGCTATTAGTGGTGGTGATGCTATCATTACTTGTAGTAGACTCGTTGGCCTTAGTTCAACCTTCTACGGTAGATGACAATGGCATATCATCAATATGGAGTGATTGGTTAGATGAAGATAGAGCACCTACTCTAGCACCGTGTTTACACATGATGAGGAGTGAAAAATGCCAAGTGGAACTTTATAACTATTACTTCAATATAAGCAAGAAGGAATTGGATCTAAGTTGTTGCGTATATGTCAATTACATGGGCAAGAAATGTGCTGCAGCATTTGAGTTTTGGTTCTCGTTCCCTAGTTTAGAAGCCTTAAAGCCTAATCCAATGAAGGTCTACAACAATTGTTTTAAGAGACTGACTTTTCCAGCACCAACGCCACTTTAA

mRNA sequence

ATGAACAACTCGACTCGAGTGCTATTAGTGGTGGTGATGCTATCATTACTTGTAGTAGACTCGTTGGCCTTAGTTCAACCTTCTACGGTAGATGACAATGGCATATCATCAATATGGAGTGATTGGTTAGATGAAGATAGAGCACCTACTCTAGCACCGTGTTTACACATGATGAGGAGTGAAAAATGCCAAGTGGAACTTTATAACTATTACTTCAATATAAGCAAGAAGGAATTGGATCTAAGTTGTTGCGTATATGTCAATTACATGGGCAAGAAATGTGCTGCAGCATTTGAGTTTTGGTTCTCGTTCCCTAGTTTAGAAGCCTTAAAGCCTAATCCAATGAAGGTCTACAACAATTGTTTTAAGAGACTGACTTTTCCAGCACCAACGCCACTTTAA

Coding sequence (CDS)

ATGAACAACTCGACTCGAGTGCTATTAGTGGTGGTGATGCTATCATTACTTGTAGTAGACTCGTTGGCCTTAGTTCAACCTTCTACGGTAGATGACAATGGCATATCATCAATATGGAGTGATTGGTTAGATGAAGATAGAGCACCTACTCTAGCACCGTGTTTACACATGATGAGGAGTGAAAAATGCCAAGTGGAACTTTATAACTATTACTTCAATATAAGCAAGAAGGAATTGGATCTAAGTTGTTGCGTATATGTCAATTACATGGGCAAGAAATGTGCTGCAGCATTTGAGTTTTGGTTCTCGTTCCCTAGTTTAGAAGCCTTAAAGCCTAATCCAATGAAGGTCTACAACAATTGTTTTAAGAGACTGACTTTTCCAGCACCAACGCCACTTTAA

Protein sequence

MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSEKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNNCFKRLTFPAPTPL*

Homology

[Close]

BLAST of Csa5G381840 vs. TrEMBL
Match: A0A0A0KQ41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G381840 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 2.5e-72
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1


Query: 1   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 60
           MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS
Sbjct: 1   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 60

Query: 61  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 120
           EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN
Sbjct: 61  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 120

Query: 121 CFKRLTFPAPTPL 134
           CFKRLTFPAPTPL
Sbjct: 121 CFKRLTFPAPTPL 133

[Close]

BLAST of Csa5G381840 vs. TrEMBL
Match: A0A0A0L535_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G008300 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.4e-53
Identity = 100/132 (75.76%), Postives = 116/132 (87.88%), Query Frame = 1


Query: 2   NNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSE 61
           +NST  LL+VVMLSLLVVDSLALV PS +DDNGISSIWS W+D+DRAP LA CL++M+S+
Sbjct: 5   SNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYLMKSD 64

Query: 62  KCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNNC 121
           KCQVELYNYYFN SKKE+DLSCCVYVNY+G++CAA+FE WFS    +ALKPNPMK+YNNC
Sbjct: 65  KCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNNC 124

Query: 122 FKRLTFPAPTPL 134
           FKRLT PAP  L
Sbjct: 125 FKRLTVPAPPTL 136

[Close]

BLAST of Csa5G381840 vs. TrEMBL
Match: A0A0A0KEB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G054340 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.1e-42
Identity = 86/133 (64.66%), Postives = 100/133 (75.19%), Query Frame = 1


Query: 1   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 60
           M N T  +  +V+L L  ++   LVQ S VD++  SSIW+DWLDEDRA TL PCL  MRS
Sbjct: 1   MANKTNAMRAMVIL-LSAINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRS 60

Query: 61  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 120
            KCQVELYNYYFNISKKELDL+CCV+V  MGKKCA AF FW+ FP LE  +PNPMKVYNN
Sbjct: 61  AKCQVELYNYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNN 120

Query: 121 CFKRLTFPAPTPL 134
           C  RL+ P PTP+
Sbjct: 121 CATRLSAPPPTPI 132

[Close]

BLAST of Csa5G381840 vs. TrEMBL
Match: A0A0A0K8R6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G056570 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.7e-10
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 1


Query: 4  STRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDR 48
          ST  LLV+ +LSLLVVDSLALVQPSTVDD+GIS IWSDW+DE+R
Sbjct: 8  STGALLVMTVLSLLVVDSLALVQPSTVDDDGISPIWSDWVDENR 51

[Close]

BLAST of Csa5G381840 vs. NCBI nr
Match: gi|700195802|gb|KGN50979.1| (hypothetical protein Csa_5G381840 [Cucumis sativus])

HSP 1 Score: 279.3 bits (713), Expect = 3.6e-72
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1


Query: 1   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 60
           MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS
Sbjct: 1   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 60

Query: 61  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 120
           EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN
Sbjct: 61  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 120

Query: 121 CFKRLTFPAPTPL 134
           CFKRLTFPAPTPL
Sbjct: 121 CFKRLTFPAPTPL 133

[Close]

BLAST of Csa5G381840 vs. NCBI nr
Match: gi|700200589|gb|KGN55722.1| (hypothetical protein Csa_3G008300 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 4.9e-53
Identity = 100/132 (75.76%), Postives = 116/132 (87.88%), Query Frame = 1


Query: 2   NNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSE 61
           +NST  LL+VVMLSLLVVDSLALV PS +DDNGISSIWS W+D+DRAP LA CL++M+S+
Sbjct: 5   SNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYLMKSD 64

Query: 62  KCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNNC 121
           KCQVELYNYYFN SKKE+DLSCCVYVNY+G++CAA+FE WFS    +ALKPNPMK+YNNC
Sbjct: 65  KCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNNC 124

Query: 122 FKRLTFPAPTPL 134
           FKRLT PAP  L
Sbjct: 125 FKRLTVPAPPTL 136

[Close]

BLAST of Csa5G381840 vs. NCBI nr
Match: gi|700190907|gb|KGN46111.1| (hypothetical protein Csa_6G054340 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 3.0e-42
Identity = 86/133 (64.66%), Postives = 100/133 (75.19%), Query Frame = 1


Query: 1   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 60
           M N T  +  +V+L L  ++   LVQ S VD++  SSIW+DWLDEDRA TL PCL  MRS
Sbjct: 1   MANKTNAMRAMVIL-LSAINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRS 60

Query: 61  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 120
            KCQVELYNYYFNISKKELDL+CCV+V  MGKKCA AF FW+ FP LE  +PNPMKVYNN
Sbjct: 61  AKCQVELYNYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNN 120

Query: 121 CFKRLTFPAPTPL 134
           C  RL+ P PTP+
Sbjct: 121 CATRLSAPPPTPI 132

[Close]

BLAST of Csa5G381840 vs. NCBI nr
Match: gi|700190936|gb|KGN46140.1| (hypothetical protein Csa_6G056570 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 6.8e-10
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 1


Query: 4  STRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDR 48
          ST  LLV+ +LSLLVVDSLALVQPSTVDD+GIS IWSDW+DE+R
Sbjct: 8  STGALLVMTVLSLLVVDSLALVQPSTVDDDGISPIWSDWVDENR 51

The following BLAST results are available for this feature:

BLAST of Csa5G381840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ41_CUCSA	2.5e-72	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G381840 PE=4 SV=1	[more]
A0A0A0L535_CUCSA	3.4e-53	75.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G008300 PE=4 SV=1	[more]
A0A0A0KEB8_CUCSA	2.1e-42	64.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G054340 PE=4 SV=1	[more]
A0A0A0K8R6_CUCSA	4.7e-10	79.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G056570 PE=4 SV=1	[more]

BLAST of Csa5G381840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195802\|gb\|KGN50979.1\|	3.6e-72	100.00	hypothetical protein Csa_5G381840 [Cucumis sativus]	[more]
gi\|700200589\|gb\|KGN55722.1\|	4.9e-53	75.76	hypothetical protein Csa_3G008300 [Cucumis sativus]	[more]
gi\|700190907\|gb\|KGN46111.1\|	3.0e-42	64.66	hypothetical protein Csa_6G054340 [Cucumis sativus]	[more]
gi\|700190936\|gb\|KGN46140.1\|	6.8e-10	79.55	hypothetical protein Csa_6G056570 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008502	Prolamin-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G381840.1	Csa5G381840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 54..121 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G381840	CSPI05G14260	Wild cucumber (PI 183967)	cpicuB239
Csa5G381840	CsGy5G014230	Cucumber (Gy14) v2	cgybcuB223

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G381840	Cucurbita maxima (Rimu)	cmacuB293
Csa5G381840	Cucurbita maxima (Rimu)	cmacuB750
Csa5G381840	Cucurbita moschata (Rifu)	cmocuB280
Csa5G381840	Cucurbita moschata (Rifu)	cmocuB740
Csa5G381840	Watermelon (Charleston Gray)	cuwcgB362
Csa5G381840	Watermelon (Charleston Gray)	cuwcgB383
Csa5G381840	Watermelon (97103) v1	cuwmB383
Csa5G381840	Watermelon (97103) v1	cuwmB385
Csa5G381840	Cucurbita pepo (Zucchini)	cpecuB187
Csa5G381840	Cucurbita pepo (Zucchini)	cpecuB441
Csa5G381840	Bottle gourd (USVL1VR-Ls)	culsiB330
Csa5G381840	Bottle gourd (USVL1VR-Ls)	culsiB375
Csa5G381840	Cucumber (Gy14) v2	cgybcuB180
Csa5G381840	Melon (DHL92) v3.6.1	cumedB330
Csa5G381840	Silver-seed gourd	carcuB0556
Csa5G381840	Silver-seed gourd	carcuB0845
Csa5G381840	Watermelon (97103) v2	cuwmbB366
Csa5G381840	Watermelon (97103) v2	cuwmbB371
Csa5G381840	Wax gourd	cuwgoB452
Csa5G381840	Wax gourd	cuwgoB524
Csa5G381840	Cucumber (Chinese Long) v2	cucuB140