CsGy5G014230 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G014230
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr5 : 19545936 .. 19547292 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGATGAACAACTCGACTCGAGTGCTATTAGTGGTGGTGATGCTATCATTACTTGTAGTAGACTCGTTGGCCTTAGTTCAACCTTCTACGGTAGATGACAATGGCATATCATCAATATGGAGTGATTGGTTAGATGAAGATAGAGCACCTACTCTAGCACCGTGTTTACACATGATGAGGAGTGAAAAATGCCAAGTGGAACTTTATAACTATTACTTCAATATAAGCAAGAAGGAATTGGATCTAAGTTGTTGCGTATATGTCAATTACATGGGCAAGAAATGTGCTGCAGCATTTGAGTTTTGGTTCTCGTTCCCTAGTTTAGAAGCCTTAAAGCCTAATCCAATGAAGGTCTACAACAATTGTTTTAAGAGACTGACTTTTCCAGCACCAACGCCACTTTAAGCCTTACGTTTACCCTATGCTTTTATATTATTTCATCAATAAATGTAAGCTAATAAATGTTTGAGACTAATTTAGCGTCACTTTTGAAGAATCCTCTTTTATTCTTTAGGTAAGATTATTATCATTCGATCTATTTAGGTAAAATTAATTTATAAATGGCTAAATTTAAGATTTATAGAAAATGCAACAACTACAATTGGATAATTAAAAGTATATAAACTAATTTTAGCTTTCGATTATAATTTTCACTACAAATTGGATGTGAGGGGATATGAATACTGGATTTTTTTATTTTCACTGCATACAAGTTGAACGACTCTTGTTGCACTTGAACATAATTAAAAAATTAGAATTATCTAAGTTAAATAAAGTTCATTTGATAACATTCTCGGTAAAACTAAGAACTAGAAATTGAAATATGTTCCGTAATTATTTTTGTTTTCGGTTCTTGAAAAACAAAAATAATAAAAAAAAATTGTTTGATAATTATTTCTTGTGTCTTTGTTTATCATCTTTCTCCTACATATCTTCTTCTTTTTTATTTCTATAATTGGCTACCACCTGGGACCGTTGCTACCACCCAATTATGGCCACTCTAAATGTAATGGTAAGTGGGCAACTCTTGGCCATCGCGACTCACCAGCGACTACTACCATCGTGATGATAAACTTTAACAATTCATTTGTCTCTTTTGTCCTTTAATAAAACTCAATAGAGATCATAATGTATGAATAATTTAGTAGGAAAAAATCTTGTTTACATCTTTATTTTATTTCATTTGTCTTTCTTTAGTTCTTGACCCTGGAACGTATTTAGCAGTTCTTTTTTCCTAATGATTCGTATGTTAAAAAATTTATTTACTCAAAGATTCATATTTTACTTTTTTTTTTTTATCAGAATAAAAGAATTTGCTATTAAGTTAATAAGTTTTTGGCTTCCTAATTAA

mRNA sequence

ATGGAAAAGATGAACAACTCGACTCGAGTGCTATTAGTGGTGGTGATGCTATCATTACTTGTAGTAGACTCGTTGGCCTTAGTTCAACCTTCTACGGTAGATGACAATGGCATATCATCAATATGGAGTGATTGGTTAGATGAAGATAGAGCACCTACTCTAGCACCGTGTTTACACATGATGAGGAGTGAAAAATGCCAAGTGGAACTTTATAACTATTACTTCAATATAAGCAAGAAGGAATTGGATCTAAGTTGTTGCGTATATGTCAATTACATGGGCAAGAAATGTGCTGCAGCATTTGAGTTTTGGTTCTCGTTCCCTAGTTTAGAAGCCTTAAAGCCTAATCCAATGAAGGTCTACAACAATTTTCTTGACCCTGGAACAATAAAAGAATTTGCTATTAAGTTAATAAGTTTTTGGCTTCCTAATTAA

Coding sequence (CDS)

ATGGAAAAGATGAACAACTCGACTCGAGTGCTATTAGTGGTGGTGATGCTATCATTACTTGTAGTAGACTCGTTGGCCTTAGTTCAACCTTCTACGGTAGATGACAATGGCATATCATCAATATGGAGTGATTGGTTAGATGAAGATAGAGCACCTACTCTAGCACCGTGTTTACACATGATGAGGAGTGAAAAATGCCAAGTGGAACTTTATAACTATTACTTCAATATAAGCAAGAAGGAATTGGATCTAAGTTGTTGCGTATATGTCAATTACATGGGCAAGAAATGTGCTGCAGCATTTGAGTTTTGGTTCTCGTTCCCTAGTTTAGAAGCCTTAAAGCCTAATCCAATGAAGGTCTACAACAATTTTCTTGACCCTGGAACAATAAAAGAATTTGCTATTAAGTTAATAAGTTTTTGGCTTCCTAATTAA

Protein sequence

MEKMNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSEKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNNFLDPGTIKEFAIKLISFWLPN

Homology

[Close]

BLAST of CsGy5G014230 vs. NCBI nr
Match: KGN50979.1 (hypothetical protein Csa_5G381840 [Cucumis sativus])

HSP 1 Score: 247.3 bits (630), Expect = 3.2e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 4   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 63
           MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS
Sbjct: 1   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 60

Query: 64  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 123
           EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN
Sbjct: 61  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 120

[Close]

BLAST of CsGy5G014230 vs. NCBI nr
Match: KGN55722.1 (hypothetical protein Csa_3G008300 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 2.5e-46
Identity = 92/123 (74.80%), Postives = 108/123 (87.80%), Query Frame = 0


Query: 1   MEKMNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHM 60
           M K +NST  LL+VVMLSLLVVDSLALV PS +DDNGISSIWS W+D+DRAP LA CL++
Sbjct: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60

Query: 61  MRSEKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKV 120
           M+S+KCQVELYNYYFN SKKE+DLSCCVYVNY+G++CAA+FE WFS    +ALKPNPMK+
Sbjct: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120

Query: 121 YNN 124
           YNN
Sbjct: 121 YNN 123

[Close]

BLAST of CsGy5G014230 vs. NCBI nr
Match: KGN46111.1 (hypothetical protein Csa_6G054340 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 3.9e-36
Identity = 79/120 (65.83%), Postives = 91/120 (75.83%), Query Frame = 0


Query: 4   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 63
           M N T  +  +V+L L  ++   LVQ S VD++  SSIW+DWLDEDRA TL PCL  MRS
Sbjct: 1   MANKTNAMRAMVIL-LSAINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRS 60

Query: 64  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 123
            KCQVELYNYYFNISKKELDL+CCV+V  MGKKCA AF FW+ FP LE  +PNPMKVYNN
Sbjct: 61  AKCQVELYNYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNN 119

[Close]

BLAST of CsGy5G014230 vs. NCBI nr
Match: KGN46140.1 (hypothetical protein Csa_6G056570 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 9.2e-09
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 3  KMNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDR 51
          K + ST  LLV+ +LSLLVVDSLALVQPSTVDD+GIS IWSDW+DE+R
Sbjct: 4  KASYSTGALLVMTVLSLLVVDSLALVQPSTVDDDGISPIWSDWVDENR 51

[Close]

BLAST of CsGy5G014230 vs. TrEMBL
Match: tr|A0A0A0KQ41|A0A0A0KQ41_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381840 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 2.1e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 4   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 63
           MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS
Sbjct: 1   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 60

Query: 64  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 123
           EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN
Sbjct: 61  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 120

[Close]

BLAST of CsGy5G014230 vs. TrEMBL
Match: tr|A0A0A0L535|A0A0A0L535_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G008300 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.6e-46
Identity = 92/123 (74.80%), Postives = 108/123 (87.80%), Query Frame = 0


Query: 1   MEKMNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHM 60
           M K +NST  LL+VVMLSLLVVDSLALV PS +DDNGISSIWS W+D+DRAP LA CL++
Sbjct: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60

Query: 61  MRSEKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKV 120
           M+S+KCQVELYNYYFN SKKE+DLSCCVYVNY+G++CAA+FE WFS    +ALKPNPMK+
Sbjct: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120

Query: 121 YNN 124
           YNN
Sbjct: 121 YNN 123

[Close]

BLAST of CsGy5G014230 vs. TrEMBL
Match: tr|A0A0A0KEB8|A0A0A0KEB8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G054340 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.6e-36
Identity = 79/120 (65.83%), Postives = 91/120 (75.83%), Query Frame = 0


Query: 4   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 63
           M N T  +  +V+L L  ++   LVQ S VD++  SSIW+DWLDEDRA TL PCL  MRS
Sbjct: 1   MANKTNAMRAMVIL-LSAINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRS 60

Query: 64  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 123
            KCQVELYNYYFNISKKELDL+CCV+V  MGKKCA AF FW+ FP LE  +PNPMKVYNN
Sbjct: 61  AKCQVELYNYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNN 119

[Close]

BLAST of CsGy5G014230 vs. TrEMBL
Match: tr|A0A0A0K8R6|A0A0A0K8R6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G056570 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.1e-09
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 3  KMNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDR 51
          K + ST  LLV+ +LSLLVVDSLALVQPSTVDD+GIS IWSDW+DE+R
Sbjct: 4  KASYSTGALLVMTVLSLLVVDSLALVQPSTVDDDGISPIWSDWVDENR 51

The following BLAST results are available for this feature:

BLAST of CsGy5G014230 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50979.1	3.2e-62	100.00	hypothetical protein Csa_5G381840 [Cucumis sativus]	[more]
KGN55722.1	2.5e-46	74.80	hypothetical protein Csa_3G008300 [Cucumis sativus]	[more]
KGN46111.1	3.9e-36	65.83	hypothetical protein Csa_6G054340 [Cucumis sativus]	[more]
KGN46140.1	9.2e-09	75.00	hypothetical protein Csa_6G056570 [Cucumis sativus]	[more]

BLAST of CsGy5G014230 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G014230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G014230 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KQ41\|A0A0A0KQ41_CUCSA	2.1e-62	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381840 PE=4 SV=1	[more]
tr\|A0A0A0L535\|A0A0A0L535_CUCSA	1.6e-46	74.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G008300 PE=4 SV=1	[more]
tr\|A0A0A0KEB8\|A0A0A0KEB8_CUCSA	2.6e-36	65.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G054340 PE=4 SV=1	[more]
tr\|A0A0A0K8R6\|A0A0A0K8R6_CUCSA	6.1e-09	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G056570 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008502	Prolamin-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G014230.1	CsGy5G014230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 57..111 e-value: 2.7E-6 score: 27.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G014230	Csa5G381840	Cucumber (Chinese Long) v2	cgybcuB223
CsGy5G014230	CSPI05G14260	Wild cucumber (PI 183967)	cgybcpiB225
CsGy5G014230	CsaV3_5G023330	Cucumber (Chinese Long) v3	cgybcucB232

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G014230	Watermelon (97103) v2	cgybwmbB349
CsGy5G014230	Watermelon (97103) v2	cgybwmbB354
CsGy5G014230	Wax gourd	cgybwgoB428
CsGy5G014230	Wax gourd	cgybwgoB500
CsGy5G014230	Cucumber (Gy14) v2	cgybcgybB125
CsGy5G014230	Cucurbita maxima (Rimu)	cgybcmaB600
CsGy5G014230	Cucurbita maxima (Rimu)	cgybcmaB676
CsGy5G014230	Cucurbita moschata (Rifu)	cgybcmoB574
CsGy5G014230	Cucurbita moschata (Rifu)	cgybcmoB654
CsGy5G014230	Cucurbita pepo (Zucchini)	cgybcpeB609
CsGy5G014230	Cucurbita pepo (Zucchini)	cgybcpeB650
CsGy5G014230	Bottle gourd (USVL1VR-Ls)	cgyblsiB302
CsGy5G014230	Melon (DHL92) v3.5.1	cgybmeB294
CsGy5G014230	Melon (DHL92) v3.6.1	cgybmedB294
CsGy5G014230	Watermelon (Charleston Gray)	cgybwcgB349
CsGy5G014230	Watermelon (97103) v1	cgybwmB356
CsGy5G014230	Watermelon (97103) v1	cgybwmB357
CsGy5G014230	Wild cucumber (PI 183967)	cgybcpiB221
CsGy5G014230	Silver-seed gourd	carcgybB0533
CsGy5G014230	Silver-seed gourd	carcgybB0819