Csa5G308790 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G308790
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Mitochondrial GTPase 1
Location	Chr5 : 12477586 .. 12478242 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCACTTTTTTACCTGCTGAAATGGTATGTTTCATAATTTTGATGAATGACATTAGCTTTTGGGAATCTCCAGGTATAGAAACACTTCAAAAGCGGTACAAAGTTGATGCAGGCGGTCAGTGTGGTCAAATGTACGTTATCATATGCTGATCAATAGTTTTCCATTTCTAGTTCGGTATTACTAATATATGTGTGAAGCATCCAGATTTCTAGATGAGAAAAACTCTACCTCTCTTTACTCCCATTCCACCTTGGGTTACATTCTTTCTTTTGCCCAGTAGATGGAATCTATTTATGAAAAACGAGTGCATATTTGCAGTCTAAAATAATTCCTAACAAATTGCTGTAACAGATTTGTTCAAAAGTTAGCCCTCCAATTGTTCAACGGGGACAATCATCAAGCAGCTTTTCGCATCTTATCGGATTTTCGCAAAGGAAAGTTTGGTTGGACTGCTTTGGAGAGGCCTCCCAGGTAATGCTGTTGGATGATGGTTTGCTTGAAGGTCAGAATTTGAGCTTCTCGCTCTTACACTAGTTGTACAGATTCTAAAGGCCACTCTCAAACTGAGAAATGAAATTCACGATGCTTATATTGCTTTCGACTTGCGGACTTGTGGGAAGCTCAAAATTGGAGACCTTGATCATAAATGGTAA

mRNA sequence

ATGTTCACTTTTTTACCTGCTGAAATGGTATGTTTCATAATTTTGATGAATGACATTAGCTTTTGGGAATCTCCAGGTATAGAAACACTTCAAAAGCGGTACAAAGTTGATGCAGGCGGTCAGTGTGGTCAAATATTTGTTCAAAAGTTAGCCCTCCAATTGTTCAACGGGGACAATCATCAAGCAGCTTTTCGCATCTTATCGGATTTTCGCAAAGGAAAGTTTGGTTGGACTGCTTTGGAGAGGCCTCCCAGGTCAGAATTTGAGCTTCTCGCTCTTACACTAGTTGTACAGATTCTAAAGGCCACTCTCAAACTGAGAAATGAAATTCACGATGCTTATATTGCTTTCGACTTGCGGACTTGTGGGAAGCTCAAAATTGGAGACCTTGATCATAAATGGTAA

Coding sequence (CDS)

ATGTTCACTTTTTTACCTGCTGAAATGGTATGTTTCATAATTTTGATGAATGACATTAGCTTTTGGGAATCTCCAGGTATAGAAACACTTCAAAAGCGGTACAAAGTTGATGCAGGCGGTCAGTGTGGTCAAATATTTGTTCAAAAGTTAGCCCTCCAATTGTTCAACGGGGACAATCATCAAGCAGCTTTTCGCATCTTATCGGATTTTCGCAAAGGAAAGTTTGGTTGGACTGCTTTGGAGAGGCCTCCCAGGTCAGAATTTGAGCTTCTCGCTCTTACACTAGTTGTACAGATTCTAAAGGCCACTCTCAAACTGAGAAATGAAATTCACGATGCTTATATTGCTTTCGACTTGCGGACTTGTGGGAAGCTCAAAATTGGAGACCTTGATCATAAATGGTAA

Protein sequence

MFTFLPAEMVCFIILMNDISFWESPGIETLQKRYKVDAGGQCGQIFVQKLALQLFNGDNHQAAFRILSDFRKGKFGWTALERPPRSEFELLALTLVVQILKATLKLRNEIHDAYIAFDLRTCGKLKIGDLDHKW*

Homology

[Close]

BLAST of Csa5G308790 vs. Swiss-Prot
Match: DGP3_ARATH (DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana GN=DGP3 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.2e-15
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 1


Query: 26  GIETLQKRYKVDAGGQCGQIFVQKLALQLFNGDNHQAAFRILSDFRKGKFGWTALERPP 85
           G + L  RYK+   G CG+ FV+ L L LF GD+HQAAFRIL+DFRKGKFG+ +LERPP
Sbjct: 313 GAKALYNRYKIQLEGNCGKKFVKTLGLNLFGGDSHQAAFRILTDFRKGKFGYVSLERPP 371

[Close]

BLAST of Csa5G308790 vs. TrEMBL
Match: A0A0A0KPR0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G308790 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.7e-71
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1


Query: 1   MFTFLPAEMVCFIILMNDISFWESPGIETLQKRYKVDAGGQCGQIFVQKLALQLFNGDNH 60
           MFTFLPAEMVCFIILMNDISFWESPGIETLQKRYKVDAGGQCGQIFVQKLALQLFNGDNH
Sbjct: 1   MFTFLPAEMVCFIILMNDISFWESPGIETLQKRYKVDAGGQCGQIFVQKLALQLFNGDNH 60

Query: 61  QAAFRILSDFRKGKFGWTALERPPRSEFELLALTLVVQILKATLKLRNEIHDAYIAFDLR 120
           QAAFRILSDFRKGKFGWTALERPPRSEFELLALTLVVQILKATLKLRNEIHDAYIAFDLR
Sbjct: 61  QAAFRILSDFRKGKFGWTALERPPRSEFELLALTLVVQILKATLKLRNEIHDAYIAFDLR 120

Query: 121 TCGKLKIGDLDHKW 135
           TCGKLKIGDLDHKW
Sbjct: 121 TCGKLKIGDLDHKW 134

[Close]

BLAST of Csa5G308790 vs. TrEMBL
Match: A0A059A972_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03362 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.0e-20
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 1


Query: 14  ILMNDISFWESPGIETLQKRYKVDAGGQCGQIFVQKLALQLFNGDNHQAAFRILSDFRKG 73
           IL+  ++   + G+  LQ RYK+D  G CG IFVQK+ALQLFNGD HQAAFRILSDFRKG
Sbjct: 297 ILVQMLTRLPAVGVGVLQNRYKIDVDGHCGDIFVQKVALQLFNGDIHQAAFRILSDFRKG 356

Query: 74  KFGWTALERPPR 86
           KFGW ALERPPR
Sbjct: 357 KFGWVALERPPR 368

[Close]

BLAST of Csa5G308790 vs. TrEMBL
Match: A0A059A7U8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03362 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.0e-20
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 1


Query: 14  ILMNDISFWESPGIETLQKRYKVDAGGQCGQIFVQKLALQLFNGDNHQAAFRILSDFRKG 73
           IL+  ++   + G+  LQ RYK+D  G CG IFVQK+ALQLFNGD HQAAFRILSDFRKG
Sbjct: 274 ILVQMLTRLPAVGVGVLQNRYKIDVDGHCGDIFVQKVALQLFNGDIHQAAFRILSDFRKG 333

Query: 74  KFGWTALERPPR 86
           KFGW ALERPPR
Sbjct: 334 KFGWVALERPPR 345

[Close]

BLAST of Csa5G308790 vs. TrEMBL
Match: A0A059A828_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03362 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.0e-20
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 1


Query: 14  ILMNDISFWESPGIETLQKRYKVDAGGQCGQIFVQKLALQLFNGDNHQAAFRILSDFRKG 73
           IL+  ++   + G+  LQ RYK+D  G CG IFVQK+ALQLFNGD HQAAFRILSDFRKG
Sbjct: 296 ILVQMLTRLPAVGVGVLQNRYKIDVDGHCGDIFVQKVALQLFNGDIHQAAFRILSDFRKG 355

Query: 74  KFGWTALERPPR 86
           KFGW ALERPPR
Sbjct: 356 KFGWVALERPPR 367

[Close]

BLAST of Csa5G308790 vs. TrEMBL
Match: A0A061DQU2_THECC (GTP-binding family protein OS=Theobroma cacao GN=TCM_004383 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-19
Identity = 47/73 (64.38%), Postives = 60/73 (82.19%), Query Frame = 1


Query: 13  IILMNDISFWESPGIETLQKRYKVDAGGQCGQIFVQKLALQLFNGDNHQAAFRILSDFRK 72
           +IL+  ++   + G++ LQ RYKVD  GQCG+IF++K+AL+LFNGD  QAAFR+LSDFRK
Sbjct: 298 VILVQMLAKLPTVGMKALQNRYKVDVDGQCGKIFIEKVALRLFNGDIQQAAFRVLSDFRK 357

Query: 73  GKFGWTALERPPR 86
           GKFGW ALERPPR
Sbjct: 358 GKFGWVALERPPR 370

[Close]

BLAST of Csa5G308790 vs. TAIR10
Match: AT4G02790.1 (AT4G02790.1 GTP-binding family protein)

HSP 1 Score: 82.8 bits (203), Expect = 1.8e-16
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 1


Query: 26  GIETLQKRYKVDAGGQCGQIFVQKLALQLFNGDNHQAAFRILSDFRKGKFGWTALERPP 85
           G + L  RYK+   G CG+ FV+ L L LF GD+HQAAFRIL+DFRKGKFG+ +LERPP
Sbjct: 313 GAKALYNRYKIQLEGNCGKKFVKTLGLNLFGGDSHQAAFRILTDFRKGKFGYVSLERPP 371

[Close]

BLAST of Csa5G308790 vs. NCBI nr
Match: gi|700195697|gb|KGN50874.1| (hypothetical protein Csa_5G308790 [Cucumis sativus])

HSP 1 Score: 276.6 bits (706), Expect = 2.4e-71
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1


Query: 1   MFTFLPAEMVCFIILMNDISFWESPGIETLQKRYKVDAGGQCGQIFVQKLALQLFNGDNH 60
           MFTFLPAEMVCFIILMNDISFWESPGIETLQKRYKVDAGGQCGQIFVQKLALQLFNGDNH
Sbjct: 1   MFTFLPAEMVCFIILMNDISFWESPGIETLQKRYKVDAGGQCGQIFVQKLALQLFNGDNH 60

Query: 61  QAAFRILSDFRKGKFGWTALERPPRSEFELLALTLVVQILKATLKLRNEIHDAYIAFDLR 120
           QAAFRILSDFRKGKFGWTALERPPRSEFELLALTLVVQILKATLKLRNEIHDAYIAFDLR
Sbjct: 61  QAAFRILSDFRKGKFGWTALERPPRSEFELLALTLVVQILKATLKLRNEIHDAYIAFDLR 120

Query: 121 TCGKLKIGDLDHKW 135
           TCGKLKIGDLDHKW
Sbjct: 121 TCGKLKIGDLDHKW 134

[Close]

BLAST of Csa5G308790 vs. NCBI nr
Match: gi|778702006|ref|XP_011655122.1| (PREDICTED: mitochondrial ribosome-associated GTPase 1 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 4.7e-27
Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 1


Query: 14  ILMNDISFWESPGIETLQKRYKVDAGGQCGQIFVQKLALQLFNGDNHQAAFRILSDFRKG 73
           IL+  ++   S GIETLQKRYKVDAGGQCGQIFVQKLALQLFNGDNHQAAFRILSDFRKG
Sbjct: 298 ILVQILTKLPSVGIETLQKRYKVDAGGQCGQIFVQKLALQLFNGDNHQAAFRILSDFRKG 357

Query: 74  KFGWTALERPPR 86
           KFGWTALERPPR
Sbjct: 358 KFGWTALERPPR 369

[Close]

BLAST of Csa5G308790 vs. NCBI nr
Match: gi|659126309|ref|XP_008463116.1| (PREDICTED: mitochondrial ribosome-associated GTPase 1 [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 5.2e-26
Identity = 61/72 (84.72%), Postives = 65/72 (90.28%), Query Frame = 1


Query: 14  ILMNDISFWESPGIETLQKRYKVDAGGQCGQIFVQKLALQLFNGDNHQAAFRILSDFRKG 73
           IL+  ++   S GIE+LQKRYKVDAGGQCG IFVQKLALQLFNGDNHQAAFRILSDFRKG
Sbjct: 298 ILVQILTKLPSVGIESLQKRYKVDAGGQCGHIFVQKLALQLFNGDNHQAAFRILSDFRKG 357

Query: 74  KFGWTALERPPR 86
           KFGWTALERPPR
Sbjct: 358 KFGWTALERPPR 369

[Close]

BLAST of Csa5G308790 vs. NCBI nr
Match: gi|629083445|gb|KCW49890.1| (hypothetical protein EUGRSUZ_K03362 [Eucalyptus grandis])

HSP 1 Score: 106.3 bits (264), Expect = 4.3e-20
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 1


Query: 14  ILMNDISFWESPGIETLQKRYKVDAGGQCGQIFVQKLALQLFNGDNHQAAFRILSDFRKG 73
           IL+  ++   + G+  LQ RYK+D  G CG IFVQK+ALQLFNGD HQAAFRILSDFRKG
Sbjct: 297 ILVQMLTRLPAVGVGVLQNRYKIDVDGHCGDIFVQKVALQLFNGDIHQAAFRILSDFRKG 356

Query: 74  KFGWTALERPPR 86
           KFGW ALERPPR
Sbjct: 357 KFGWVALERPPR 368

[Close]

BLAST of Csa5G308790 vs. NCBI nr
Match: gi|702499899|ref|XP_010038090.1| (PREDICTED: mitochondrial ribosome-associated GTPase 1 isoform X2 [Eucalyptus grandis])

HSP 1 Score: 106.3 bits (264), Expect = 4.3e-20
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 1


Query: 14  ILMNDISFWESPGIETLQKRYKVDAGGQCGQIFVQKLALQLFNGDNHQAAFRILSDFRKG 73
           IL+  ++   + G+  LQ RYK+D  G CG IFVQK+ALQLFNGD HQAAFRILSDFRKG
Sbjct: 293 ILVQMLTRLPAVGVGVLQNRYKIDVDGHCGDIFVQKVALQLFNGDIHQAAFRILSDFRKG 352

Query: 74  KFGWTALERPPR 86
           KFGW ALERPPR
Sbjct: 353 KFGWVALERPPR 364

The following BLAST results are available for this feature:

BLAST of Csa5G308790 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DGP3_ARATH	3.2e-15	62.71	DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana GN=DGP3 PE=2 SV=1	[more]

BLAST of Csa5G308790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPR0_CUCSA	1.7e-71	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G308790 PE=4 SV=1	[more]
A0A059A972_EUCGR	3.0e-20	69.44	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03362 PE=4 SV=1	[more]
A0A059A7U8_EUCGR	3.0e-20	69.44	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03362 PE=4 SV=1	[more]
A0A059A828_EUCGR	3.0e-20	69.44	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03362 PE=4 SV=1	[more]
A0A061DQU2_THECC	1.5e-19	64.38	GTP-binding family protein OS=Theobroma cacao GN=TCM_004383 PE=4 SV=1	[more]

BLAST of Csa5G308790 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02790.1	1.8e-16	62.71	GTP-binding family protein	[more]

BLAST of Csa5G308790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195697\|gb\|KGN50874.1\|	2.4e-71	100.00	hypothetical protein Csa_5G308790 [Cucumis sativus]	[more]
gi\|778702006\|ref\|XP_011655122.1\|	4.7e-27	87.50	PREDICTED: mitochondrial ribosome-associated GTPase 1 [Cucumis sativus]	[more]
gi\|659126309\|ref\|XP_008463116.1\|	5.2e-26	84.72	PREDICTED: mitochondrial ribosome-associated GTPase 1 [Cucumis melo]	[more]
gi\|629083445\|gb\|KCW49890.1\|	4.3e-20	69.44	hypothetical protein EUGRSUZ_K03362 [Eucalyptus grandis]	[more]
gi\|702499899\|ref\|XP_010038090.1\|	4.3e-20	69.44	PREDICTED: mitochondrial ribosome-associated GTPase 1 isoform X2 [Eucalyptus gra...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0034660	ncRNA metabolic process
biological_process	GO:0006655	phosphatidylglycerol biosynthetic process
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0010027	thylakoid membrane organization
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005623	cell
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0005525	GTP binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU085396	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G308790.1	Csa5G308790.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU085396	CU085396	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11089	GTP-BINDING PROTEIN-RELATED	coord: 26..84 score: 1.5
None	No IPR available	PANTHER	PTHR11089:SF36	GTP-BINDING PROTEIN	coord: 26..84 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G308790	MELO3C025054.2	Melon (DHL92) v3.6.1	cumedB344
Csa5G308790	CSPI05G13420	Wild cucumber (PI 183967)	cpicuB241
Csa5G308790	Cucsa.067570	Cucumber (Gy14) v1	cgycuB061
Csa5G308790	CsGy5G013190	Cucumber (Gy14) v2	cgybcuB223

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G308790	Wax gourd	cuwgoB441
Csa5G308790	Cucurbita maxima (Rimu)	cmacuB304
Csa5G308790	Cucurbita moschata (Rifu)	cmocuB292
Csa5G308790	Melon (DHL92) v3.5.1	cumeB365
Csa5G308790	Watermelon (Charleston Gray)	cuwcgB367
Csa5G308790	Watermelon (97103) v1	cuwmB412
Csa5G308790	Cucurbita pepo (Zucchini)	cpecuB180
Csa5G308790	Bottle gourd (USVL1VR-Ls)	culsiB325
Csa5G308790	Silver-seed gourd	carcuB0844
Csa5G308790	Watermelon (97103) v2	cuwmbB339