Csa5G242150 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G242150
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 10490371 .. 10490777 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAAACCCAACTATGTGAATCTGAGAGAGGATGAACGGAAAAAGTTTTCTCGCCGGCGATCAATGGCAAGATGCGAAGGACTGAAAGACGACTCGTGACGAGCGTGAGGAGGAAACCGTAGGCTAAGGAAAATTAAAAGAAGGAACACTGAGAGGCAAAGGAGACGGTTGCACAGGTCGGGAGTTCCGAACTTGCGGGGGCAGATGGTGCCGCGACGGACGACGACGGTGAGAAAGAGACAAATGATAGTGAGCTTGAAATTGCAGAGAGTTGTGTGGATTCTTCTCAACCTAAGGTTCTTAAGCAGTTTCCAATGACTGACACTATTGGAAAAAATTGGAAGGACATGAATGAGAGAAGTGGAAATGCAAACCACAGAAGAGAAGAGAAAGCGGTGGAGTAG

mRNA sequence

ATGGTAAAACCCAACTATGTGAATCTGAGAGAGGATGAACGGAAAAAGTTTTCTCGCCGGCGATCAATGGCAAGATGCGAAGGACTGAAAGACGACTCTTCCGAACTTGCGGGGGCAGATGGTGCCGCGACGGACGACGACGGTGAGAAAGAGACAAATGATAGTGAGCTTGAAATTGCAGAGAGTTGTGTGGATTCTTCTCAACCTAAGGTTCTTAAGCAGTTTCCAATGACTGACACTATTGGAAAAAATTGGAAGGACATGAATGAGAGAAGTGGAAATGCAAACCACAGAAGAGAAGAGAAAGCGGTGGAGTAG

Coding sequence (CDS)

ATGGTAAAACCCAACTATGTGAATCTGAGAGAGGATGAACGGAAAAAGTTTTCTCGCCGGCGATCAATGGCAAGATGCGAAGGACTGAAAGACGACTCTTCCGAACTTGCGGGGGCAGATGGTGCCGCGACGGACGACGACGGTGAGAAAGAGACAAATGATAGTGAGCTTGAAATTGCAGAGAGTTGTGTGGATTCTTCTCAACCTAAGGTTCTTAAGCAGTTTCCAATGACTGACACTATTGGAAAAAATTGGAAGGACATGAATGAGAGAAGTGGAAATGCAAACCACAGAAGAGAAGAGAAAGCGGTGGAGTAG

Protein sequence

MVKPNYVNLREDERKKFSRRRSMARCEGLKDDSSELAGADGAATDDDGEKETNDSELEIAESCVDSSQPKVLKQFPMTDTIGKNWKDMNERSGNANHRREEKAVE*
Homology
[Close]
BLAST of Csa5G242150 vs. TrEMBL
Match: A0A0A0KQR8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G242150 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 3.6e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

Query: 1   MVKPNYVNLREDERKKFSRRRSMARCEGLKDDSSELAGADGAATDDDGEKETNDSELEIA 60
           MVKPNYVNLREDERKKFSRRRSMARCEGLKDDSSELAGADGAATDDDGEKETNDSELEIA
Sbjct: 1   MVKPNYVNLREDERKKFSRRRSMARCEGLKDDSSELAGADGAATDDDGEKETNDSELEIA 60

Query: 61  ESCVDSSQPKVLKQFPMTDTIGKNWKDMNERSGNANHRREEKAVE 106
           ESCVDSSQPKVLKQFPMTDTIGKNWKDMNERSGNANHRREEKAVE
Sbjct: 61  ESCVDSSQPKVLKQFPMTDTIGKNWKDMNERSGNANHRREEKAVE 105

[Close]
BLAST of Csa5G242150 vs. NCBI nr
Match: gi|700195590|gb|KGN50767.1| (hypothetical protein Csa_5G242150 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 5.1e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

Query: 1   MVKPNYVNLREDERKKFSRRRSMARCEGLKDDSSELAGADGAATDDDGEKETNDSELEIA 60
           MVKPNYVNLREDERKKFSRRRSMARCEGLKDDSSELAGADGAATDDDGEKETNDSELEIA
Sbjct: 1   MVKPNYVNLREDERKKFSRRRSMARCEGLKDDSSELAGADGAATDDDGEKETNDSELEIA 60

Query: 61  ESCVDSSQPKVLKQFPMTDTIGKNWKDMNERSGNANHRREEKAVE 106
           ESCVDSSQPKVLKQFPMTDTIGKNWKDMNERSGNANHRREEKAVE
Sbjct: 61  ESCVDSSQPKVLKQFPMTDTIGKNWKDMNERSGNANHRREEKAVE 105

The following BLAST results are available for this feature:
BLAST of Csa5G242150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQR8_CUCSA3.6e-53100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G242150 PE=4 SV=1[more]
BLAST of Csa5G242150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195590|gb|KGN50767.1|5.1e-53100.00hypothetical protein Csa_5G242150 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G242150.1Csa5G242150.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G242150CsGy5G009130Cucumber (Gy14) v2cgybcuB224
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G242150Melon (DHL92) v3.5.1cumeB369