CsGy5G009130 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G009130
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr5 : 7267005 .. 7267411 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAAACCCAACTATGTGAATCTGAGAGAGGATGAACGGAAAAAGTTTTCTCGCCGGCGATCAATGGCAAGATGCGAAGGACTGAAAGACGACTCGTGACGAGCGTGAGGAGGAAACCGTAGGCTAAGGAAAATTAAAAGAAGGAACACTGAGAGGCAAAGGAGACGGTTGCACAGGTCGGGAGTTCCGAACTTGCGGGGGCAGATGGTGCCGCGACGGACGACGACGGTGAGAAAGAGACAAATGATAGTGAGCTTGAAATTGCAGAGAGTTGTGTGGATTCTTCTCAACCTAAGGTTCTTAAGCAGTTTCCAATGACTGACACTATTGGAAAAAATTGGAAGGACATGAATGAGAGAAGTGGAAATGCAAACCACAGAAGAGAAGAGAAAGCGGTGGAGTAG

mRNA sequence

ATGGTAAAACCCAACTATGTGAATCTGAGAGAGGATGAACGGAAAAAGTTTTCTCGCCGGCGATCAATGGCAAGATGCGAAGGACTGAAAGACGACTCTTCCGAACTTGCGGGGGCAGATGGTGCCGCGACGGACGACGACGGTGAGAAAGAGACAAATGATAGTGAGCTTGAAATTGCAGAGAGTTGTGTGGATTCTTCTCAACCTAAGGTTCTTAAGCAGTTTCCAATGACTGACACTATTGGAAAAAATTGGAAGGACATGAATGAGAGAAGTGGAAATGCAAACCACAGAAGAGAAGAGAAAGCGGTGGAGTAG

Coding sequence (CDS)

ATGGTAAAACCCAACTATGTGAATCTGAGAGAGGATGAACGGAAAAAGTTTTCTCGCCGGCGATCAATGGCAAGATGCGAAGGACTGAAAGACGACTCTTCCGAACTTGCGGGGGCAGATGGTGCCGCGACGGACGACGACGGTGAGAAAGAGACAAATGATAGTGAGCTTGAAATTGCAGAGAGTTGTGTGGATTCTTCTCAACCTAAGGTTCTTAAGCAGTTTCCAATGACTGACACTATTGGAAAAAATTGGAAGGACATGAATGAGAGAAGTGGAAATGCAAACCACAGAAGAGAAGAGAAAGCGGTGGAGTAG

Protein sequence

MVKPNYVNLREDERKKFSRRRSMARCEGLKDDSSELAGADGAATDDDGEKETNDSELEIAESCVDSSQPKVLKQFPMTDTIGKNWKDMNERSGNANHRREEKAVE

Homology

[Close]

BLAST of CsGy5G009130 vs. NCBI nr
Match: KGN50767.1 (hypothetical protein Csa_5G242150 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 2.3e-49
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVKPNYVNLREDERKKFSRRRSMARCEGLKDDSSELAGADGAATDDDGEKETNDSELEIA 60
           MVKPNYVNLREDERKKFSRRRSMARCEGLKDDSSELAGADGAATDDDGEKETNDSELEIA
Sbjct: 1   MVKPNYVNLREDERKKFSRRRSMARCEGLKDDSSELAGADGAATDDDGEKETNDSELEIA 60

Query: 61  ESCVDSSQPKVLKQFPMTDTIGKNWKDMNERSGNANHRREEKAVE 106
           ESCVDSSQPKVLKQFPMTDTIGKNWKDMNERSGNANHRREEKAVE
Sbjct: 61  ESCVDSSQPKVLKQFPMTDTIGKNWKDMNERSGNANHRREEKAVE 105

[Close]

BLAST of CsGy5G009130 vs. TrEMBL
Match: tr|A0A0A0KQR8|A0A0A0KQR8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G242150 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.5e-49
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVKPNYVNLREDERKKFSRRRSMARCEGLKDDSSELAGADGAATDDDGEKETNDSELEIA 60
           MVKPNYVNLREDERKKFSRRRSMARCEGLKDDSSELAGADGAATDDDGEKETNDSELEIA
Sbjct: 1   MVKPNYVNLREDERKKFSRRRSMARCEGLKDDSSELAGADGAATDDDGEKETNDSELEIA 60

Query: 61  ESCVDSSQPKVLKQFPMTDTIGKNWKDMNERSGNANHRREEKAVE 106
           ESCVDSSQPKVLKQFPMTDTIGKNWKDMNERSGNANHRREEKAVE
Sbjct: 61  ESCVDSSQPKVLKQFPMTDTIGKNWKDMNERSGNANHRREEKAVE 105

The following BLAST results are available for this feature:

BLAST of CsGy5G009130 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50767.1	2.3e-49	100.00	hypothetical protein Csa_5G242150 [Cucumis sativus]	[more]

BLAST of CsGy5G009130 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G009130 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G009130 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KQR8\|A0A0A0KQR8_CUCSA	1.5e-49	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G242150 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G009130.1	CsGy5G009130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..105

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G009130	Csa5G242150	Cucumber (Chinese Long) v2	cgybcuB224

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G009130	Melon (DHL92) v3.5.1	cgybmeB312
CsGy5G009130	Melon (DHL92) v3.5.1	cgybmeB320
CsGy5G009130	Melon (DHL92) v3.6.1	cgybmedB311
CsGy5G009130	Wild cucumber (PI 183967)	cgybcpiB226
CsGy5G009130	Cucumber (Chinese Long) v3	cgybcucB232