Csa5G218850 (gene) Cucumber (Chinese Long) v2

NameCsa5G218850
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionMitochondrial ribosomal protein L37; contains IPR013870 (Ribosomal protein L37, mitochondrial)
LocationChr5 : 9861266 .. 9861678 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTGAACTTGAACCAAATTAGTTTGTTTAGAAGAAGCATTATTGTCAATAGCAAAGACCTAATACAGTTGACATCTGTCCGAACATTCACTGCCGGAGGCAAATCAAAGAAGGGATCTAAAGGGGGTGCAGCTGTCGATGCTCCTAAAGCATCAATACTAAGTAAAGAGGGGTGAGGTCTACTACCGTAGTTGGTGCCAATATTCTCAACGAAGGTGTAGATCCAAAAGTTATGGCAGACTCGGAGTATTCTATTTGGCTGTGGCATTTGCTTGATAAACATCTACCTCTAAGCGAATTGCGGAGGAGGAATGTCAAAACCCTTCCCTACGCAGATTTCAAATGCTTTGTTAAATTGGATACTCGAGCAAGAATCAAGGAAAACACCTCTACTGAGGCCAAGAATTGA

mRNA sequence

ATGGGTTTGAACTTGAACCAAATTAGTTTGTTTAGAAGAAGCATTATTGTCAATAGCAAAGACCTAATACAGTTGACATCTGTCCGAACATTCACTGCCGGAGGCAAATCAAAGAAGGGATCTAAAGGGGGTGCAGCTGTCGATGCTCCTAAAGCATCAATACTAATTGGTGCCAATATTCTCAACGAAGGTGTAGATCCAAAAGTTATGGCAGACTCGGAGTATTCTATTTGGCTGTGGCATTTGCTTGATAAACATCTACCTCTAAGCGAATTGCGGAGGAGGAATGTCAAAACCCTTCCCTACGCAGATTTCAAATGCTTTGTTAAATTGGATACTCGAGCAAGAATCAAGGAAAACACCTCTACTGAGGCCAAGAATTGA

Coding sequence (CDS)

ATGGGTTTGAACTTGAACCAAATTAGTTTGTTTAGAAGAAGCATTATTGTCAATAGCAAAGACCTAATACAGTTGACATCTGTCCGAACATTCACTGCCGGAGGCAAATCAAAGAAGGGATCTAAAGGGGGTGCAGCTGTCGATGCTCCTAAAGCATCAATACTAATTGGTGCCAATATTCTCAACGAAGGTGTAGATCCAAAAGTTATGGCAGACTCGGAGTATTCTATTTGGCTGTGGCATTTGCTTGATAAACATCTACCTCTAAGCGAATTGCGGAGGAGGAATGTCAAAACCCTTCCCTACGCAGATTTCAAATGCTTTGTTAAATTGGATACTCGAGCAAGAATCAAGGAAAACACCTCTACTGAGGCCAAGAATTGA

Protein sequence

MGLNLNQISLFRRSIIVNSKDLIQLTSVRTFTAGGKSKKGSKGGAAVDAPKASILIGANILNEGVDPKVMADSEYSIWLWHLLDKHLPLSELRRRNVKTLPYADFKCFVKLDTRARIKENTSTEAKN*
BLAST of Csa5G218850 vs. TrEMBL
Match: A0A0A0KP92_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G218850 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 2.4e-64
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1

Query: 1   MGLNLNQISLFRRSIIVNSKDLIQLTSVRTFTAGGKSKKGSKGGAAVDAPKASILIGANI 60
           MGLNLNQISLFRRSIIVNSKDLIQLTSVRTFTAGGKSKKGSKGGAAVDAPKASILIGANI
Sbjct: 1   MGLNLNQISLFRRSIIVNSKDLIQLTSVRTFTAGGKSKKGSKGGAAVDAPKASILIGANI 60

Query: 61  LNEGVDPKVMADSEYSIWLWHLLDKHLPLSELRRRNVKTLPYADFKCFVKLDTRARIKEN 120
           LNEGVDPKVMADSEYSIWLWHLLDKHLPLSELRRRNVKTLPYADFKCFVKLDTRARIKEN
Sbjct: 61  LNEGVDPKVMADSEYSIWLWHLLDKHLPLSELRRRNVKTLPYADFKCFVKLDTRARIKEN 120

Query: 121 TSTEAKN 128
           TSTEAKN
Sbjct: 121 TSTEAKN 127

BLAST of Csa5G218850 vs. TrEMBL
Match: A0A0A0KYS4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G539610 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 4.8e-44
Identity = 93/131 (70.99%), Postives = 109/131 (83.21%), Query Frame = 1

Query: 5   LNQISLFRRSIIVNSKDLIQLTSVRTFTAGGKSKKGSKGGAAVDAPKASI---------L 64
           ++Q+ LFRR+IIV+SK+LIQLTSVRTF AGGKSKKGSKGGAA DAPKASI         +
Sbjct: 1   MSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV 60

Query: 65  IGANILNEGVDPKVMADSEYSIWLWHLLDKHLPLSELRRRNVKTLPYADFKCFVKLDTRA 124
           +GANIL EG DPK+MADSEY  WLW+LL+KH PLSELRR+N ++LPYAD K F+KLDTRA
Sbjct: 61  VGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRA 120

Query: 125 RIKENTSTEAK 127
           RIKEN S +AK
Sbjct: 121 RIKENNSIKAK 131

BLAST of Csa5G218850 vs. TrEMBL
Match: A0A0B2RJC8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_044758 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.1e-31
Identity = 76/121 (62.81%), Postives = 87/121 (71.90%), Query Frame = 1

Query: 16  IVNSKDLIQLTSVRTFTAGGKSKKGSKGGAAVDAPKASIL---------IGANILNEGVD 75
           I+ +K+++ +   RTF A GK+KKGSKGGAA DAPKAS L         +GANIL EG D
Sbjct: 12  ILTTKEVVGVACQRTF-ATGKAKKGSKGGAAADAPKASTLSKEVKSSTVVGANILKEGTD 71

Query: 76  PKVMADSEYSIWLWHLLDKHLPLSELRRRNVKTLPYADFKCFVKLDTRARIKENTSTEAK 128
           PK+  DSEY  WLWHLLDK   LSELRRRN+ TL Y D K FVKLDTRARIKEN S +AK
Sbjct: 72  PKIQPDSEYPDWLWHLLDKRPALSELRRRNIDTLSYEDLKRFVKLDTRARIKENNSVKAK 131

BLAST of Csa5G218850 vs. TrEMBL
Match: C6SYP3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G077100 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.1e-31
Identity = 76/121 (62.81%), Postives = 87/121 (71.90%), Query Frame = 1

Query: 16  IVNSKDLIQLTSVRTFTAGGKSKKGSKGGAAVDAPKASIL---------IGANILNEGVD 75
           I+ +K+++ +   RTF A GK+KKGSKGGAA DAPKAS L         +GANIL EG D
Sbjct: 12  ILTTKEVVGVACQRTF-ATGKAKKGSKGGAAADAPKASTLSKEVKSSTVVGANILKEGTD 71

Query: 76  PKVMADSEYSIWLWHLLDKHLPLSELRRRNVKTLPYADFKCFVKLDTRARIKENTSTEAK 128
           PK+  DSEY  WLWHLLDK   LSELRRRN+ TL Y D K FVKLDTRARIKEN S +AK
Sbjct: 72  PKIQPDSEYPDWLWHLLDKRPALSELRRRNIDTLSYEDLKRFVKLDTRARIKENNSVKAK 131

BLAST of Csa5G218850 vs. TrEMBL
Match: F6I5L7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0171g00420 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.7e-31
Identity = 75/134 (55.97%), Postives = 93/134 (69.40%), Query Frame = 1

Query: 3   LNLNQISLFRRSIIVNSKDLIQLTSVRTFTAGGKSKKGSKGGAAVDAPKASIL------- 62
           + +N+I   R  II  +++ ++L   RTF  GGK+KKGSKGG A DAPKAS L       
Sbjct: 6   MTMNRIKSVRSIII--TREAVRLVGCRTFAVGGKAKKGSKGGGASDAPKASTLSKEVKST 65

Query: 63  --IGANILNEGVDPKVMADSEYSIWLWHLLDKHLPLSELRRRNVKTLPYADFKCFVKLDT 122
             +GANIL +G DPKV+ DSEY  WLWHLLDK   LSELRR++V++LPY   K FVKLD 
Sbjct: 66  TTVGANILKDGTDPKVLPDSEYPDWLWHLLDKRPALSELRRKSVESLPYEALKRFVKLDN 125

Query: 123 RARIKENTSTEAKN 128
           RARIKEN + +AKN
Sbjct: 126 RARIKENNNLKAKN 137

BLAST of Csa5G218850 vs. TAIR10
Match: AT3G01740.1 (AT3G01740.1 Mitochondrial ribosomal protein L37)

HSP 1 Score: 132.5 bits (332), Expect = 1.9e-31
Identity = 74/133 (55.64%), Postives = 88/133 (66.17%), Query Frame = 1

Query: 5   LNQISLFRRSIIVNSKDLIQLTSVRTFTAGG-KSKKGSKGGAAVDAPKASIL-------- 64
           +N+I L R S   +SKD+++    RTF A   K+KKG KGG A DAPK S L        
Sbjct: 1   MNRIGLIRGS---SSKDVVR----RTFAAAASKAKKGGKGGGASDAPKGSSLTKEIKSTT 60

Query: 65  -IGANILNEGVDPKVMADSEYSIWLWHLLDKHLPLSELRRRNVKTLPYADFKCFVKLDTR 124
            +GAN L +G DPK++ DS+Y  WLWHLLDK   LSELRR+NV+TLPY D K FVKLDTR
Sbjct: 61  VVGANTLKDGSDPKILPDSDYPDWLWHLLDKRPALSELRRKNVETLPYDDLKRFVKLDTR 120

Query: 125 ARIKENTSTEAKN 128
            +IKEN S +AKN
Sbjct: 121 GKIKENNSIKAKN 126

BLAST of Csa5G218850 vs. TAIR10
Match: AT5G14290.1 (AT5G14290.1 Mitochondrial ribosomal protein L37)

HSP 1 Score: 120.2 bits (300), Expect = 9.5e-28
Identity = 68/133 (51.13%), Postives = 88/133 (66.17%), Query Frame = 1

Query: 5   LNQISLFRRSIIVNSKDLIQLTSVRTF-TAGGKSKKGSKGGAAVDAPKAS---------I 64
           +N I +F  SI   SKD+++    RTF TA GK+KK  +G    DAPKAS         +
Sbjct: 1   MNLIRMFGDSIS-RSKDVMRFVCQRTFATAAGKAKKVGRGDGGNDAPKASNLSKEIKSSM 60

Query: 65  LIGANILNEGVDPKVMADSEYSIWLWHLLDKHLPLSELRRRNVKTLPYADFKCFVKLDTR 124
           ++ AN L +G+DPK++ +S++  +LWHLLDK   LSELRR+NV+TL + D K FVKLDTR
Sbjct: 61  VVSANTLKDGLDPKILPNSDHPDYLWHLLDKRPALSELRRKNVETLSFDDLKRFVKLDTR 120

Query: 125 ARIKENTSTEAKN 128
           ARIKEN S +AKN
Sbjct: 121 ARIKENHSIKAKN 132

BLAST of Csa5G218850 vs. NCBI nr
Match: gi|700195542|gb|KGN50719.1| (hypothetical protein Csa_5G218850 [Cucumis sativus])

HSP 1 Score: 252.7 bits (644), Expect = 3.5e-64
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1

Query: 1   MGLNLNQISLFRRSIIVNSKDLIQLTSVRTFTAGGKSKKGSKGGAAVDAPKASILIGANI 60
           MGLNLNQISLFRRSIIVNSKDLIQLTSVRTFTAGGKSKKGSKGGAAVDAPKASILIGANI
Sbjct: 1   MGLNLNQISLFRRSIIVNSKDLIQLTSVRTFTAGGKSKKGSKGGAAVDAPKASILIGANI 60

Query: 61  LNEGVDPKVMADSEYSIWLWHLLDKHLPLSELRRRNVKTLPYADFKCFVKLDTRARIKEN 120
           LNEGVDPKVMADSEYSIWLWHLLDKHLPLSELRRRNVKTLPYADFKCFVKLDTRARIKEN
Sbjct: 61  LNEGVDPKVMADSEYSIWLWHLLDKHLPLSELRRRNVKTLPYADFKCFVKLDTRARIKEN 120

Query: 121 TSTEAKN 128
           TSTEAKN
Sbjct: 121 TSTEAKN 127

BLAST of Csa5G218850 vs. NCBI nr
Match: gi|659083110|ref|XP_008442187.1| (PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 189.9 bits (481), Expect = 2.8e-45
Identity = 96/133 (72.18%), Postives = 109/133 (81.95%), Query Frame = 1

Query: 3   LNLNQISLFRRSIIVNSKDLIQLTSVRTFTAGGKSKKGSKGGAAVDAPKASI-------- 62
           + L+QI  FRR+IIV+SKDLIQLTSVR+F AGGKSKKGSKGGAA DAPKASI        
Sbjct: 1   MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKST 60

Query: 63  -LIGANILNEGVDPKVMADSEYSIWLWHLLDKHLPLSELRRRNVKTLPYADFKCFVKLDT 122
            ++GANIL EG DPK+MADSEY  WLWHLLDKH PLSELRR+N ++LPYAD + FVKLDT
Sbjct: 61  TVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKLDT 120

Query: 123 RARIKENTSTEAK 127
           RARIKEN S +AK
Sbjct: 121 RARIKENNSIKAK 133

BLAST of Csa5G218850 vs. NCBI nr
Match: gi|659083108|ref|XP_008442186.1| (PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 189.9 bits (481), Expect = 2.8e-45
Identity = 96/133 (72.18%), Postives = 109/133 (81.95%), Query Frame = 1

Query: 3   LNLNQISLFRRSIIVNSKDLIQLTSVRTFTAGGKSKKGSKGGAAVDAPKASI-------- 62
           + L+QI  FRR+IIV+SKDLIQLTSVR+F AGGKSKKGSKGGAA DAPKASI        
Sbjct: 28  MGLSQIRFFRRNIIVSSKDLIQLTSVRSFAAGGKSKKGSKGGAAADAPKASILSKEVKST 87

Query: 63  -LIGANILNEGVDPKVMADSEYSIWLWHLLDKHLPLSELRRRNVKTLPYADFKCFVKLDT 122
            ++GANIL EG DPK+MADSEY  WLWHLLDKH PLSELRR+N ++LPYAD + FVKLDT
Sbjct: 88  TVVGANILKEGADPKIMADSEYPAWLWHLLDKHPPLSELRRKNAESLPYADLRRFVKLDT 147

Query: 123 RARIKENTSTEAK 127
           RARIKEN S +AK
Sbjct: 148 RARIKENNSIKAK 160

BLAST of Csa5G218850 vs. NCBI nr
Match: gi|778695065|ref|XP_004144674.2| (PREDICTED: 39S ribosomal protein L54, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 6.8e-44
Identity = 93/131 (70.99%), Postives = 109/131 (83.21%), Query Frame = 1

Query: 5   LNQISLFRRSIIVNSKDLIQLTSVRTFTAGGKSKKGSKGGAAVDAPKASI---------L 64
           ++Q+ LFRR+IIV+SK+LIQLTSVRTF AGGKSKKGSKGGAA DAPKASI         +
Sbjct: 1   MSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTV 60

Query: 65  IGANILNEGVDPKVMADSEYSIWLWHLLDKHLPLSELRRRNVKTLPYADFKCFVKLDTRA 124
           +GANIL EG DPK+MADSEY  WLW+LL+KH PLSELRR+N ++LPYAD K F+KLDTRA
Sbjct: 61  VGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRA 120

Query: 125 RIKENTSTEAK 127
           RIKEN S +AK
Sbjct: 121 RIKENNSIKAK 131

BLAST of Csa5G218850 vs. NCBI nr
Match: gi|659114140|ref|XP_008456923.1| (PREDICTED: uncharacterized protein LOC103496726 [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 2.2e-34
Identity = 88/136 (64.71%), Postives = 100/136 (73.53%), Query Frame = 1

Query: 3   LNLNQISLFRRSIIVNSKDLIQLTSVRTFTAGGKSKKGSKGGAAVDAPKASIL------- 62
           + LNQISLFRRSIIVNSK+LIQLTSVRTF AGGKSKKGSKGGAA +APKASIL       
Sbjct: 1   MGLNQISLFRRSIIVNSKNLIQLTSVRTFAAGGKSKKGSKGGAAANAPKASILSKEVTST 60

Query: 63  --IGANILNEGVDPKVMADSE-YSIWLWHLLDKHLPLSE-LRRRNVKTLPYADFKCFVKL 122
             IGA IL E  D KVMADS+ YS+WLWHLLDKH PLS+ +     +     D K F KL
Sbjct: 61  TVIGAKILKEVADSKVMADSKYYSVWLWHLLDKHPPLSKHIAEEECRNPFLTDLKRFGKL 120

Query: 123 DTRARIKENTSTEAKN 128
           D+R RIKEN+  +AK+
Sbjct: 121 DSRERIKENSFIKAKS 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KP92_CUCSA2.4e-64100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G218850 PE=4 SV=1[more]
A0A0A0KYS4_CUCSA4.8e-4470.99Uncharacterized protein OS=Cucumis sativus GN=Csa_4G539610 PE=4 SV=1[more]
A0A0B2RJC8_GLYSO2.1e-3162.81Uncharacterized protein OS=Glycine soja GN=glysoja_044758 PE=4 SV=1[more]
C6SYP3_SOYBN2.1e-3162.81Uncharacterized protein OS=Glycine max GN=GLYMA_19G077100 PE=2 SV=1[more]
F6I5L7_VITVI2.7e-3155.97Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0171g00420 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT3G01740.11.9e-3155.64 Mitochondrial ribosomal protein L37[more]
AT5G14290.19.5e-2851.13 Mitochondrial ribosomal protein L37[more]
Match NameE-valueIdentityDescription
gi|700195542|gb|KGN50719.1|3.5e-64100.00hypothetical protein Csa_5G218850 [Cucumis sativus][more]
gi|659083110|ref|XP_008442187.1|2.8e-4572.18PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo][more]
gi|659083108|ref|XP_008442186.1|2.8e-4572.18PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo][more]
gi|778695065|ref|XP_004144674.2|6.8e-4470.99PREDICTED: 39S ribosomal protein L54, mitochondrial-like [Cucumis sativus][more]
gi|659114140|ref|XP_008456923.1|2.2e-3464.71PREDICTED: uncharacterized protein LOC103496726 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013870Ribosomal_L37_mit
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU094985cucumber EST collection version 3.0transcribed_cluster
CU176543cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G218850.1Csa5G218850.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU094985CU094985transcribed_cluster
CU176543CU176543transcribed_cluster


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013870Ribosomal protein L37, mitochondrialPFAMPF08561Ribosomal_L37coord: 49..85
score: 4.
NoneNo IPR availablePANTHERPTHR28595FAMILY NOT NAMEDcoord: 5..127
score: 2.6