CsGy5G008630 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G008630
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protein ROOT PRIMORDIUM DEFECTIVE 1
Location	Chr5 : 6586100 .. 6589249 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACAAGTTCTTTTCCTCTTTAATTCTTCAATATCGATGCCAAAGCCCCAAGCTTTTTCTGTACCATCAATGGCGAGGAATAGCCAAGGTTCGTCTTAAATGGGTTAAGAATCGGAGTCTCGATCACATCATTGACACGGAGACCGATTTGAAGGCCGCTTGCCTTCTCAAGAACGCCATTAAGCGCTCCTCTACTGGCTTTATCACTGCCAAATCCATCGCCAACTGGCAAAAGCTACTTGGCCTCACAATCCCTGTTATTCGATTCATTCGGAGGTACCCAACTCTCTTTCACGAATTTCCTCATTCTCGTTATGCTAATCTGCCTTGCTTTCGTATGACGGATACTGCGCTATTATTAGATCAGGAAGAGGGTAGTATACATCAATTTCACGAGAGTGACACTGTTGAAAGACTTTGTAGAGTGCTTATGATGATGAAAACTAGGACTGTTCCACTTCAATCCTTGCGTCCCTTAGAATGGGATCTTGGTCTGCCATGTGATTTTGAGAGGTCATTGGTTCCAAGGTATCCAGATCATTTTCGATTAGTGAAGGCCTCCAATGGGGATTGGTGTCTCCGGCTTAAGGAATGGCGGGAGGAATTTGCAGTTTCAGCCTTGCAAAGGAGCAATGAGAGTTCTGGATTGGGGGATGCATATAGGCAATTCAAAAAGGGGTGTACCACATTGGCTTTTCCTCAGAGTTTTCCAAGGGGATATGGGGCACAAAATAAGGTAAAGGCTTGGATGGAAGAGTTTCAGAAGTTACCTTACATTTCTCCATATGAGAGTTGTAGGCAGGTCGATCCCAACAGTGATCTCATGGAGAAAAGAGTTGTTGGGGTTCTACATGAGCTTTTGAGTTTGACTCTTCACAAAAAAACTAAAAGAAATTATTTGAGAAGCTTGAGAGAGGAAATGGATCTCCCTCATAAGTTCACTCGAATCTTCACCCGATATCCTGGAATTTTTTATCTCTCCTTGAAGTGTAAGACCACCACCGTTTCTCTCAAAGAAGGGTATCAACGAGGAAAGCTAGTGACCCCACATCCGTTGACATGTCTAAGGGAGAAGTTTTATCATGTCATGAAGACTGGACTGTTATACCGTGGGAGAGGCGCTGCAATGTTGGAAAAGGAGGGCATTTTGCTTAATAATACAGTTGAGGTGGTGGAGGATGGTTCAAATACTGAATCAGATGAGATAGGTGATGATGAATGTTTGGAGGATGACAACTCACGAGTAGAGGAATCTGATTCAGATTAATAGACCAAACATTGGACTATCCTCCTTTGCTAGTGGATCCTTCCTTTGCTAGTTGACCAAAAAGAGGGACTAAAATGAATGCCTCCGGCTCCTGTTTATCTATAAGAAAATTGTGAGCTTTCTCTTTTCCTTATGTTTATTTATCCTGCTGCTTCTTGCTCGAAAAAAGTTGTGCAGCAATGCTAAAGCCTTGTAGTTTTTTCTCTTAGACACAAGTTAATTCTTCATCATTTTGTTTCACTATTTAAATCAATACTATGTTTCATACGGATCCCTATGTTCCTACATTCCATTTGGGTTTGCTGAGGACCCTAAAAAGTTAGGGAAATTAGGCAGCAATTTATTTGATTGCAATTTAGGCAGTTTGAGTGACATCTTTTGTTTTTCTTTCAGCTTCATTAGTAGTCTCCATTTGGGGAATCAGCATTGTCCCATATAATAAAATTTTGTATAGTTTATGTGATAAAGGCACATAGGCTATTGAGGAGAGAAATGCTTTCTAGTGAACAGAGATTTGGAAAGATGGTATCGTATTATGCACTATTCGTGACTCGCAAAATGAAATGCAGAAGCTTTGCTATGAAAAAAACAACTTATTTTTCATACTTCATACTTCATACGTTCATACTCAAAACTTGATCCAGTAGAAAGTTGAAGAGGACATGGCTGGTTAAGAAATTATTTATCTGCTACTTTGTACGGATTTGAGTAACTAGTAAGTTTAGTTTTATAACTTTTGGCCTTTCTTTGTCTCTGTTATACTTGGAGAAAGAGTTGTTCTGGCACATGTTTTCAAGTTCAGACATTGCGATGCATTTTGTTTGTTTTTTTTTTTTTTTTTGTTTTTTGTTTCTGTTTGAAACCATATCCGGAAGGTTTATGTATTAGCTCATAAGATAAACAAACCCTAAATTATACATGGCCTTTGAGATGTTGTGTTGTATCAAACAGTTGGATTCTTACCATAGTTGATTCAAAGAAAGACTGACTACCATAGCTGTTGAATTAATTCATCAGAACTAATGAATTCGTTCGTTTCTATGTTGCAGAGAAGAACAATATGGGTTTGAACTTGAACCAAATTAGTTTGTTTAGAAGAAGCATTATTGTCAATAGCAAAGACCTAATACAGTTGACATCTGTCCGAACATTCACTGCCGGAGGCAAATCAAAGAAGGGATCTAAAGGGGGTGCAGCTGTCGATGCTCCTAAAGCATCAATACTAAGTAAAGAGGGGTGAGGTCTACTACCGTAGTTGGTGCCAATATTCTCAACGAAGGTGTAGATCCAAAAGTTATGGCAGACTCGGAGTATTCTATTTGGCTGTGGCATTTGCTTGATAAACATCTACCTCTAAGCGAATTGCGGAGGAGGAATGTCAAAACCCTTCCCTACGCAGATTTCAAATGCTTTGTTAAATTGGATACTCGAGCAAGAATCAAGGAAAACACCTCTACTGAGGCCAAGAATTGATGTAATAATCTAGTAGAGGCACACTTTCTTATTGTTTCTCTTGTGGATGCAAGTAAAACCCCTCATGTGGAATGTTGTTAATAACTAGCAAAGTCCCATCTTCGTTGATTTGTGCTGCTATCCCATTTTCTTTCTCATCACTTTCAAAGCCCATTTGTCTTGCTTTCTGTTAGTTTCTTCGGCCATATTGAAAGCAGACCAGTTAGGTGCAATTGGTGAACCATCCTTGTTGTATTCTTTTTTATTCTTTTGTACGAAGAAAGAAGAGAAGTCAATGATATCGGGTTGTAAGTGATCTCATCGGACCATTTATAAAACATGACATGACAGATTGATAATTTCGTTAAATGCAAGTATCACATATCTGTGAAAGGTGGTGATAGATCTGTGAAGGATGTGATCTCG

mRNA sequence

ATGAACAACAAGTTCTTTTCCTCTTTAATTCTTCAATATCGATGCCAAAGCCCCAAGCTTTTTCTGTACCATCAATGGCGAGGAATAGCCAAGGTTCGTCTTAAATGGGTTAAGAATCGGAGTCTCGATCACATCATTGACACGGAGACCGATTTGAAGGCCGCTTGCCTTCTCAAGAACGCCATTAAGCGCTCCTCTACTGGCTTTATCACTGCCAAATCCATCGCCAACTGGCAAAAGCTACTTGGCCTCACAATCCCTGTTATTCGATTCATTCGGAGGTACCCAACTCTCTTTCACGAATTTCCTCATTCTCGTTATGCTAATCTGCCTTGCTTTCGTATGACGGATACTGCGCTATTATTAGATCAGGAAGAGGGTAGTATACATCAATTTCACGAGAGTGACACTGTTGAAAGACTTTGTAGAGTGCTTATGATGATGAAAACTAGGACTGTTCCACTTCAATCCTTGCGTCCCTTAGAATGGGATCTTGGTCTGCCATGTGATTTTGAGAGGTCATTGGTTCCAAGGTATCCAGATCATTTTCGATTAGTGAAGGCCTCCAATGGGGATTGGTGTCTCCGGCTTAAGGAATGGCGGGAGGAATTTGCATGTAAGACCACCACCGTTTCTCTCAAAGAAGGGTATCAACGAGGAAAGCTAGTGACCCCACATCCGTTGACATGTCTAAGGGAGAAGTTTTATCATGTCATGAAGACTGGACTGTTATACCGTGGGAGAGGCGCTGCAATGTTGGAAAAGGAGGGCATTTTGCTTAATAATACAGTTGAGGTGGTGGAGGATGGTTCAAATACTGAATCAGATGAGATAGAGAAGAACAATATGGGTTTGAACTTGAACCAAATTAGTTTGTTTAGAAGAAGCATTATTGTCAATAGCAAAGACCTAATACAGTTGACATCTGTCCGAACATTCACTGCCGGAGGCAAATCAAAGAAGGGATCTAAAGGGGGTGCAGCTGTCGATGCTCCTAAAGCATCAATACTAAGTAAAGAGGGGTGAGGTCTACTACCGTAGTTGGTGCCAATATTCTCAACGAAGGTGTAGATCCAAAAGTTATGGCAGACTCGGAGTATTCTATTTGGCTGTGGCATTTGCTTGATAAACATCTACCTCTAAGCGAATTGCGGAGGAGGAATGTCAAAACCCTTCCCTACGCAGATTTCAAATGCTTTGTTAAATTGGATACTCGAGCAAGAATCAAGGAAAACACCTCTACTGAGGCCAAGAATTGATGTAATAATCTAGTAGAGGCACACTTTCTTATTGTTTCTCTTGTGGATGCAAGTAAAACCCCTCATGTGGAATGTTGTTAATAACTAGCAAAGTCCCATCTTCGTTGATTTGTGCTGCTATCCCATTTTCTTTCTCATCACTTTCAAAGCCCATTTGTCTTGCTTTCTGTTAGTTTCTTCGGCCATATTGAAAGCAGACCAGTTAGGTGCAATTGGTGAACCATCCTTGTTGTATTCTTTTTTATTCTTTTGTACGAAGAAAGAAGAGAAGTCAATGATATCGGGTTGTAAGTGATCTCATCGGACCATTTATAAAACATGACATGACAGATTGATAATTTCGTTAAATGCAAGTATCACATATCTGTGAAAGGTGGTGATAGATCTGTGAAGGATGTGATCTCG

Coding sequence (CDS)

ATGAACAACAAGTTCTTTTCCTCTTTAATTCTTCAATATCGATGCCAAAGCCCCAAGCTTTTTCTGTACCATCAATGGCGAGGAATAGCCAAGGTTCGTCTTAAATGGGTTAAGAATCGGAGTCTCGATCACATCATTGACACGGAGACCGATTTGAAGGCCGCTTGCCTTCTCAAGAACGCCATTAAGCGCTCCTCTACTGGCTTTATCACTGCCAAATCCATCGCCAACTGGCAAAAGCTACTTGGCCTCACAATCCCTGTTATTCGATTCATTCGGAGGTACCCAACTCTCTTTCACGAATTTCCTCATTCTCGTTATGCTAATCTGCCTTGCTTTCGTATGACGGATACTGCGCTATTATTAGATCAGGAAGAGGGTAGTATACATCAATTTCACGAGAGTGACACTGTTGAAAGACTTTGTAGAGTGCTTATGATGATGAAAACTAGGACTGTTCCACTTCAATCCTTGCGTCCCTTAGAATGGGATCTTGGTCTGCCATGTGATTTTGAGAGGTCATTGGTTCCAAGGTATCCAGATCATTTTCGATTAGTGAAGGCCTCCAATGGGGATTGGTGTCTCCGGCTTAAGGAATGGCGGGAGGAATTTGCATGTAAGACCACCACCGTTTCTCTCAAAGAAGGGTATCAACGAGGAAAGCTAGTGACCCCACATCCGTTGACATGTCTAAGGGAGAAGTTTTATCATGTCATGAAGACTGGACTGTTATACCGTGGGAGAGGCGCTGCAATGTTGGAAAAGGAGGGCATTTTGCTTAATAATACAGTTGAGGTGGTGGAGGATGGTTCAAATACTGAATCAGATGAGATAGAGAAGAACAATATGGGTTTGAACTTGAACCAAATTAGTTTGTTTAGAAGAAGCATTATTGTCAATAGCAAAGACCTAATACAGTTGACATCTGTCCGAACATTCACTGCCGGAGGCAAATCAAAGAAGGGATCTAAAGGGGGTGCAGCTGTCGATGCTCCTAAAGCATCAATACTAAGTAAAGAGGGGTGA

Protein sequence

MNNKFFSSLILQYRCQSPKLFLYHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKNAIKRSSTGFITAKSIANWQKLLGLTIPVIRFIRRYPTLFHEFPHSRYANLPCFRMTDTALLLDQEEGSIHQFHESDTVERLCRVLMMMKTRTVPLQSLRPLEWDLGLPCDFERSLVPRYPDHFRLVKASNGDWCLRLKEWREEFACKTTTVSLKEGYQRGKLVTPHPLTCLREKFYHVMKTGLLYRGRGAAMLEKEGILLNNTVEVVEDGSNTESDEIEKNNMGLNLNQISLFRRSIIVNSKDLIQLTSVRTFTAGGKSKKGSKGGAAVDAPKASILSKEG

Homology

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BLAST of CsGy5G008630 vs. NCBI nr
Match: XP_011655033.1 (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus] >KGN50720.1 hypothetical protein Csa_5G218860 [Cucumis sativus])

HSP 1 Score: 526.2 bits (1354), Expect = 8.5e-146
Identity = 278/404 (68.81%), Postives = 278/404 (68.81%), Query Frame = 0


Query: 1   MNNKFFSSLILQYRCQSPKLFLYHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKN 60
           MNNKFFSSLILQYRCQSPKLFLYHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKN
Sbjct: 1   MNNKFFSSLILQYRCQSPKLFLYHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKN 60

Query: 61  AIKRSSTGFITAKSIANWQKLLGLTIPVIRFIRRYPTLFHEFPHSRYANLPCFRMTDTAL 120
           AIKRSSTGFITAKSIANWQKLLGLTIPVIRFIRRYPTLFHEFPHSRYANLPCFRMTDTAL
Sbjct: 61  AIKRSSTGFITAKSIANWQKLLGLTIPVIRFIRRYPTLFHEFPHSRYANLPCFRMTDTAL 120

Query: 121 LLDQEEGSIHQFHESDTVERLCRVLMMMKTRTVPLQSLRPLEWDLGLPCDFERSLVPRYP 180
           LLDQEEGSIHQFHESDTVERLCRVLMMMKTRTVPLQSLRPLEWDLGLPCDFERSLVPRYP
Sbjct: 121 LLDQEEGSIHQFHESDTVERLCRVLMMMKTRTVPLQSLRPLEWDLGLPCDFERSLVPRYP 180

Query: 181 DHFRLVKASNGDWCLRLKEWREEFA----------------------------------- 240
           DHFRLVKASNGDWCLRLKEWREEFA                                   
Sbjct: 181 DHFRLVKASNGDWCLRLKEWREEFAVSALQRSNESSGLGDAYRQFKKGCTTLAFPQSFPR 240

Query: 241 ------------------------------------------------------------ 279
                                                                       
Sbjct: 241 GYGAQNKVKAWMEEFQKLPYISPYESCRQVDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300

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BLAST of CsGy5G008630 vs. NCBI nr
Match: XP_008456922.1 (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo])

HSP 1 Score: 493.8 bits (1270), Expect = 4.7e-136
Identity = 260/404 (64.36%), Postives = 268/404 (66.34%), Query Frame = 0


Query: 1   MNNKFFSSLILQYRCQSPKLFLYHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKN 60
           MNN FFSSLILQ RCQSPKLFLYHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKN
Sbjct: 1   MNNLFFSSLILQNRCQSPKLFLYHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKN 60

Query: 61  AIKRSSTGFITAKSIANWQKLLGLTIPVIRFIRRYPTLFHEFPHSRYANLPCFRMTDTAL 120
           AIKRSSTGFITAKSIANWQKLLGLTIPVIRFIRRYPTLFHEFPHSRY NLPCFR+TDTAL
Sbjct: 61  AIKRSSTGFITAKSIANWQKLLGLTIPVIRFIRRYPTLFHEFPHSRYTNLPCFRLTDTAL 120

Query: 121 LLDQEEGSIHQFHESDTVERLCRVLMMMKTRTVPLQSLRPLEWDLGLPCDFERSLVPRYP 180
           LLDQEE SIHQFHESDTVERLCRVLMMMKTR +PLQSLRPLEWDLGLPCDFERSLVPRYP
Sbjct: 121 LLDQEESSIHQFHESDTVERLCRVLMMMKTRVLPLQSLRPLEWDLGLPCDFERSLVPRYP 180

Query: 181 DHFRLVKASNGDWCLRLKEWREEFA----------------------------------- 240
           DHF+L KASNGDWCLRLKEWREEFA                                   
Sbjct: 181 DHFQLFKASNGDWCLRLKEWREEFAVSALQRSNESSGLGDAYRQFKRGCTTLAFPLSFPR 240

Query: 241 ------------------------------------------------------------ 279
                                                                       
Sbjct: 241 GYGAQNKVKAWMEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300

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BLAST of CsGy5G008630 vs. NCBI nr
Match: XP_023543563.1 (protein WHAT'S THIS FACTOR 1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 425.6 bits (1093), Expect = 1.6e-115
Identity = 233/404 (57.67%), Postives = 251/404 (62.13%), Query Frame = 0


Query: 1   MNNKFFSSLILQYRCQSPKLFLYHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKN 60
           M + FFS+LIL     SP  FL+ Q R IAKVRLKWVKNRSLDHIIDTETDLKAA LLK+
Sbjct: 1   MKSFFFSTLILPSPFLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60

Query: 61  AIKRSSTGFITAKSIANWQKLLGLTIPVIRFIRRYPTLFHEFPHSRYANLPCFRMTDTAL 120
           AI RSSTGFITAKSIA+W KLLGLTIPV+RFIRRYPTLFHEFPHSRYANLPCFR+TDTAL
Sbjct: 61  AINRSSTGFITAKSIADWPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120

Query: 121 LLDQEEGSIHQFHESDTVERLCRVLMMMKTRTVPLQSLRPLEWDLGLPCDFERSLVPRYP 180
           LLDQ+E SIHQ HESDTVERLCRVLMMMKTR +PLQSLRPLEWDLGLPC FERSL+P+YP
Sbjct: 121 LLDQQESSIHQIHESDTVERLCRVLMMMKTRAIPLQSLRPLEWDLGLPCGFERSLIPKYP 180

Query: 181 DHFRLVKASNGDWCLRLKEWREEFA----------------------------------- 240
           DHFRLVKASNGDWCLRL EWREEFA                                   
Sbjct: 181 DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSQLGDAYRQFKRGRTTLAFPMSFPR 240

Query: 241 ------------------------------------------------------------ 278
                                                                       
Sbjct: 241 GYGAQKKVKAWMEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300

[Close]

BLAST of CsGy5G008630 vs. NCBI nr
Match: XP_023543562.1 (protein WHAT'S THIS FACTOR 1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 425.6 bits (1093), Expect = 1.6e-115
Identity = 233/404 (57.67%), Postives = 251/404 (62.13%), Query Frame = 0


Query: 1   MNNKFFSSLILQYRCQSPKLFLYHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKN 60
           M + FFS+LIL     SP  FL+ Q R IAKVRLKWVKNRSLDHIIDTETDLKAA LLK+
Sbjct: 1   MKSFFFSTLILPSPFLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60

Query: 61  AIKRSSTGFITAKSIANWQKLLGLTIPVIRFIRRYPTLFHEFPHSRYANLPCFRMTDTAL 120
           AI RSSTGFITAKSIA+W KLLGLTIPV+RFIRRYPTLFHEFPHSRYANLPCFR+TDTAL
Sbjct: 61  AINRSSTGFITAKSIADWPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120

Query: 121 LLDQEEGSIHQFHESDTVERLCRVLMMMKTRTVPLQSLRPLEWDLGLPCDFERSLVPRYP 180
           LLDQ+E SIHQ HESDTVERLCRVLMMMKTR +PLQSLRPLEWDLGLPC FERSL+P+YP
Sbjct: 121 LLDQQESSIHQIHESDTVERLCRVLMMMKTRAIPLQSLRPLEWDLGLPCGFERSLIPKYP 180

Query: 181 DHFRLVKASNGDWCLRLKEWREEFA----------------------------------- 240
           DHFRLVKASNGDWCLRL EWREEFA                                   
Sbjct: 181 DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSQLGDAYRQFKRGRTTLAFPMSFPR 240

Query: 241 ------------------------------------------------------------ 278
                                                                       
Sbjct: 241 GYGAQKKVKAWMEEFQKLPYLSPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300

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BLAST of CsGy5G008630 vs. NCBI nr
Match: XP_022156041.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Momordica charantia])

HSP 1 Score: 421.8 bits (1083), Expect = 2.2e-114
Identity = 225/404 (55.69%), Postives = 248/404 (61.39%), Query Frame = 0


Query: 1   MNNKFFSSLILQYRCQSPKLFLYHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKN 60
           MN   F +L LQ   QSPKLFL+HQWRGIAKVRLKWVKNRSLDHIID ETDLKAA LLK+
Sbjct: 1   MNRLLFFTLNLQPLYQSPKLFLHHQWRGIAKVRLKWVKNRSLDHIIDMETDLKAASLLKD 60

Query: 61  AIKRSSTGFITAKSIANWQKLLGLTIPVIRFIRRYPTLFHEFPHSRYANLPCFRMTDTAL 120
           AIKRSSTGFIT KSIA+WQKLLGLTIP++RFIRRYPTLFHEFPHSRYANLPCFR+T+TA+
Sbjct: 61  AIKRSSTGFITVKSIADWQKLLGLTIPILRFIRRYPTLFHEFPHSRYANLPCFRLTETAM 120

Query: 121 LLDQEEGSIHQFHESDTVERLCRVLMMMKTRTVPLQSLRPLEWDLGLPCDFERSLVPRYP 180
            LD +E SIHQ HESDTVERLCR+LMMMKTR +PL SLRPLEWDLGLPC FERSL+P+YP
Sbjct: 121 FLDHQESSIHQVHESDTVERLCRMLMMMKTRALPLHSLRPLEWDLGLPCGFERSLIPKYP 180

Query: 181 DHFRLVKASNGDWCLRLKEWREEFA----------------------------------- 240
           DHFRLVKA NGDWCLRL +WR+EFA                                   
Sbjct: 181 DHFRLVKAPNGDWCLRLVQWRDEFAVSALQRSNENSESGDAYRQFKRGRTTLAFPMSFPR 240

Query: 241 ------------------------------------------------------------ 278
                                                                       
Sbjct: 241 GYGAQKKVKAWMEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300

[Close]

BLAST of CsGy5G008630 vs. TAIR10
Match: AT3G58520.1 (Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 326.6 bits (836), Expect = 1.8e-89
Identity = 178/384 (46.35%), Postives = 221/384 (57.55%), Query Frame = 0


Query: 19  KLFLYH-QWRG---IAKVRLKWVKNRSLDHIIDTETDLKAACLLKNAIKRSSTGFITAKS 78
           KLF  H QWRG   + KVRLKWVKN++LDH+IDTETDLKAAC+LK+AIKRS TGF+TAKS
Sbjct: 14  KLFHQHQQWRGMGAMTKVRLKWVKNKNLDHVIDTETDLKAACILKDAIKRSPTGFLTAKS 73

Query: 79  IANWQKLLGLTIPVIRFIRRYPTLFHEFPHSRYANLPCFRMTDTALLLDQEEGSIHQFHE 138
           +A+WQKLLGLT+PV+RF+RRYPTLFHEFPH+RYA+LPCF++TDTAL+LD +E  IHQ HE
Sbjct: 74  VADWQKLLGLTVPVLRFLRRYPTLFHEFPHARYASLPCFKLTDTALMLDSQEEIIHQSHE 133

Query: 139 SDTVERLCRVLMMMKTRTVPLQSLRPLEWDLGLPCDFERSLVPRYPDHFRLVKASNGDWC 198
           +DTVERLCRVLMMM+++TV L+SL  L++DLGLP ++E++LV +YPDHF  VKASNG+ C
Sbjct: 134 ADTVERLCRVLMMMRSKTVSLRSLHSLKFDLGLPDNYEKTLVMKYPDHFCFVKASNGNPC 193

Query: 199 LRLKEWREEFA------------------------------------------------- 258
           L+L +WR+EFA                                                 
Sbjct: 194 LKLVKWRDEFAFSALQKRNEDNDVSGEESRYREFKRGQSTLTFPMSFPRGYGAQKKVKAW 253

Query: 259 ------------------------------------------------------------ 270
                                                                       
Sbjct: 254 MDEFQKLPYISPYDDPSNIDPESDLMEKRAVAVLHELLSLTIHKKTKRNYLRSMRAELNI 313

[Close]

BLAST of CsGy5G008630 vs. TAIR10
Match: AT5G48040.1 (Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 127.1 bits (318), Expect = 2.1e-29
Identity = 73/196 (37.24%), Postives = 108/196 (55.10%), Query Frame = 0


Query: 14  RCQSPKLFLYHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKNAIKRSSTGFITAK 73
           +C+    F Y Q  G+  V+LKWVK+R LD ++  E  L+A C L + I  S    +   
Sbjct: 17  KCRERFDFFYQQRCGLVNVKLKWVKDRELDAVVVREKHLRAVCNLVSVISASPDLRLPIF 76

Query: 74  SIANWQKLLGL--TIPVIRFIRRYPTLF--HEFPHSRYANLPCFRMTDTALLLDQEEGSI 133
            +   +  LGL   + +  FIRRYP +F  H +  S   ++PCF +T   + L  EE  +
Sbjct: 77  KLLPHRGQLGLPQELKLSAFIRRYPNIFVEHCYWDSAGTSVPCFGLTRETIDLYYEEVDV 136

Query: 134 HQFHESDTVERLCRVLMMMKTRTVPLQSLRPLEWDLGLPCDFERSLVPRYPDHFRLVKAS 193
            + +E D + RLC++LM+   RT+ L S+  L WDLGLP D+  SL+ ++PD F LVK S
Sbjct: 137 SRVNERDVLVRLCKLLMLTCERTLSLHSIDHLRWDLGLPYDYRDSLITKHPDLFSLVKLS 196

Query: 194 NGDWCLRLKEWREEFA 206
           +    L+L  W E  A
Sbjct: 197 SDLDGLKLIHWDEHLA 212

HSP 2 Score: 52.4 bits (124), Expect = 6.5e-07
Identity = 28/76 (36.84%), Postives = 39/76 (51.32%), Query Frame = 0


Query: 206 CKTTTVSLKEGYQRGKLVTPHPLTCLREKFYHVMKTGLLYRGRGAAMLEKEGILLNNTVE 265
           C T TV L+E Y R  L+  HPL  +REKF ++M  G L R RG      E  L  N ++
Sbjct: 328 CDTQTVILREAYDRRHLIEKHPLVEVREKFANMMNEGFLDRSRGLYQKSVEADLEKNNIK 387

Query: 266 VVEDGSNTESDEIEKN 282
                 + E +E++ N
Sbjct: 388 TSYPVWSDEEEELDNN 403

[Close]

BLAST of CsGy5G008630 vs. TAIR10
Match: AT1G71850.1 (Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 95.9 bits (237), Expect = 5.1e-20
Identity = 53/177 (29.94%), Postives = 96/177 (54.24%), Query Frame = 0


Query: 35  KWVKNRSLDHIIDTETDLKAACLLKNAIKRSSTGFITAKSIANWQKLLGLTIPVIRFIRR 94
           K+V++R LDH ++ E +L+    +K+ I+      +    I + +  L + +  I FIR 
Sbjct: 30  KFVRDRGLDHAVEREKNLRPLLSIKDLIRSEPAKSVPISVITSQKDSLRVPLRPIEFIRS 89

Query: 95  YPTLFHEFPHSRYANLPCFRMTDTALLLDQEEGSIH--QFHESDTVERLCRVLMMMKTRT 154
           +P++F EF        P   +T   L  D +E  ++  + ++    +RL ++LM+ +   
Sbjct: 90  FPSVFQEFLPGGIGIHPHISLTPEILNHDADEQLVYGSETYKQGLADRLLKLLMINRINK 149

Query: 155 VPLQSLRPLEWDLGLPCDFERSLVPRYPDHFRLVKAS----NGDWCLRLKEWREEFA 206
           +PL+ L  L+WDLGLP D+  ++VP +PD+FR++K+     +G+  L L  W  E A
Sbjct: 150 IPLEILDLLKWDLGLPKDYVETMVPEFPDYFRVIKSKLRGCSGE--LELVCWSNEHA 204

[Close]

BLAST of CsGy5G008630 vs. TAIR10
Match: AT4G24320.1 (Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 88.6 bits (218), Expect = 8.2e-18
Identity = 55/165 (33.33%), Postives = 86/165 (52.12%), Query Frame = 0


Query: 25  QWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKNAIKRSSTGFITAKSIANWQKLLGL 84
           Q R     R+KWV +  LD  +  E +LK    LK+ I  S +  +   S++  + L+ L
Sbjct: 14  QRRTFVNARVKWVSDHYLDEAVQREKNLKQVISLKDRIVSSPSKSLPLSSLSLLKPLVNL 73

Query: 85  TIPVIRFIRRYPTLFHEFPHSRYANLPCFRMTDTALLLDQEEGSIHQF--HESDTVERLC 144
            I    F ++YP++F  F  S    L   R+T  AL L +EE +IH      + TV+RL 
Sbjct: 74  HITAAAFFQKYPSVFTTFQPSPSHPLH-VRLTPQALTLHKEEETIHLSPPQRNVTVQRLT 133

Query: 145 RVLMMMKTRTVPLQSLRPLEWDLGLPCDFERSLVPRYPDHFRLVK 188
           + LM+    ++PL  L    +DLGLP D+  SL+  YP++F + +
Sbjct: 134 KFLMLTGAGSLPLYVLDRFRFDLGLPRDYITSLIGDYPEYFEVTE 177

[Close]

BLAST of CsGy5G008630 vs. TAIR10
Match: AT5G45790.2 (Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-16
Identity = 58/199 (29.15%), Postives = 100/199 (50.25%), Query Frame = 0


Query: 20  LFLYHQWRGI-----AKVRLK-WVKNRSLDHIIDTETDLKAACLLKNAIKRSSTG-FITA 79
           L+ Y+Q R +     A+ RL+   ++  LD II     L     +   +     G F++ 
Sbjct: 46  LYFYNQRRWLKPVDSAQTRLENRTRDHQLDKIIPQIRKLNIILEISKLMSSKKRGPFVSL 105

Query: 80  KSIANWQKLLGLTIPVIRFIRRYPTLFHEFPHSRYANLPCFRMTDTALLLDQEEGSIHQF 139
           + ++ W+ L+GL + V  FI +YP  F  F H    NL C       +L+D+EE  + + 
Sbjct: 106 QLMSRWKNLVGLNVNVGAFIGKYPHAFEIFTHPFSKNLCCKITEKFKVLIDEEENVVREC 165

Query: 140 HESDTVERLCRVLMMMKTRTVPLQSLRPLEWDLGLPCDFERSLVPRYPDHFR-------- 199
            E D V+R+ ++L++ K   + + +LR +  +LGLP DF  S++ +Y   FR        
Sbjct: 166 -EVDAVKRVKKLLLLSKHGVLRVHALRLIRKELGLPEDFRDSILAKYSSEFRLVDLETLE 225

Query: 200 LVKASNGDWCL-RLKEWRE 203
           LV   +   C+ +++EWRE
Sbjct: 226 LVDRDDESLCVAKVEEWRE 243

[Close]

BLAST of CsGy5G008630 vs. Swiss-Prot
Match: sp|Q65XL5|WTF1_ORYSJ (Protein WHAT'S THIS FACTOR 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0571100 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.2e-14
Identity = 58/218 (26.61%), Postives = 103/218 (47.25%), Query Frame = 0


Query: 29  IAKVRLKWVKNRSLDHIIDTETDLKAACLLKNAIKRSSTGFITAKSIANWQKLLGLTIP- 88
           +A+  +K  K    D++I  +  LK    L+N +  +    ++ + +  +++ LGLT   
Sbjct: 56  VAQAAVKRRKEIPFDNVIQRDKKLKLVLKLRNILVSNPDRVMSLRDLGRFRRDLGLTRKR 115

Query: 89  -VIRFIRRYPTLFHEFPHSRYANLPCFRMTDTALLLDQEEGSIHQFHESDTVERLCRVLM 148
            +I  ++R+P +F       Y+    FR+T  A  L  +E  +    E   V +L ++LM
Sbjct: 116 RLIALLKRFPGVFEVVEEGVYSLR--FRLTPAAERLYLDELHLKNESEGLAVTKLRKLLM 175

Query: 149 MMKTRTVPLQSLRPLEWDLGLPCDFERSLVPRYPDHFRLVKASNGDWCLRLKEWREEFAC 208
           M + + + ++ +  L+ DLGLP +F  ++  RYP +FR+V+   G   L L  W  E A 
Sbjct: 176 MSQDKRILIEKIAHLKNDLGLPPEFRDTICLRYPQYFRVVQMDRGPG-LELTHWDPELAV 235

Query: 209 KTTTVSLKEG----YQRGKLVTPHPLTCLREKFYHVMK 241
               V+ +E      Q   L+   PL   R K    +K
Sbjct: 236 SAAEVAEEENRAREEQERNLIIDRPLKFNRVKLPQGLK 270

[Close]

BLAST of CsGy5G008630 vs. Swiss-Prot
Match: sp|B6TTV8|WTF1_MAIZE (Protein WHAT'S THIS FACTOR 1 OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.6e-13
Identity = 50/184 (27.17%), Postives = 88/184 (47.83%), Query Frame = 0


Query: 38  KNRSLDHIIDTETDLKAACLLKNAIKRSSTGFITAKSIANWQKLLGLTIP--VIRFIRRY 97
           K    D +I  +  LK    L+N +       ++ + +  +++ LGLT    +I  +RR+
Sbjct: 59  KEAPFDTVIQRDKKLKLVLKLRNILVAQPDRVMSLRELGRFRRDLGLTRKRRLIALLRRF 118

Query: 98  PTLFHEFPHSRYANLPCFRMTDTALLLDQEEGSIHQFHESDTVERLCRVLMMMKTRTVPL 157
           P +F       Y+    FR+T  A  L  +E  +    E   V +L ++LMM + + + +
Sbjct: 119 PGVFDVVEEGVYSLR--FRLTPAAERLYLDELRLRNESEGLAVAKLRKLLMMSQEKRILI 178

Query: 158 QSLRPLEWDLGLPCDFERSLVPRYPDHFRLVKASNGDWCLRLKEWREEFACKTTTVSLKE 217
           + +  L+ DLGLP +F  ++  RYP +FR+V+   G   L L  W  E A     ++ +E
Sbjct: 179 EKVAHLKHDLGLPPEFRDTVCLRYPQYFRVVRMDRGP-ALELTHWDPELAVSAAELAEEE 238

Query: 218 GYQR 220
              R
Sbjct: 239 SRAR 239

[Close]

BLAST of CsGy5G008630 vs. Swiss-Prot
Match: sp|A0MFS5|WTF1_ARATH (Protein WHAT'S THIS FACTOR 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At4g01037 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.2e-11
Identity = 47/184 (25.54%), Postives = 84/184 (45.65%), Query Frame = 0


Query: 31  KVRLKWVKNRSLDHIIDTETDLKAACLLKNAIKRSSTGFITAKSIANWQKLLGL--TIPV 90
           +  +K  K  + D ++  +  LK    ++  +       ++ + +  +++ LGL      
Sbjct: 73  RAAVKRRKELTFDSVVQRDKKLKLVLNIRKILVSQPDRMMSLRGLGKYRRDLGLKKRRRF 132

Query: 91  IRFIRRYPTLFHEFPHSRYANLPCFRMTDTALLLDQEEGSIHQFHESDTVERLCRVLMMM 150
           I  +R+YP +F       Y+    F+MT  A  L  +E  I    E   V +L +++MM 
Sbjct: 133 IALLRKYPGVFEIVEEGAYSLR--FKMTSEAERLYLDEMRIRNELEDVLVVKLRKLVMMS 192

Query: 151 KTRTVPLQSLRPLEWDLGLPCDFERSLVPRYPDHFRLVKASNGDWCLRLKEWREEFACKT 210
             + + L+ +  L+ DLGLP +F  ++  RYP +FR+V    G   L L  W  E A   
Sbjct: 193 IDKRILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPRGP-ALELTHWDPELAVSA 252

Query: 211 TTVS 213
             +S
Sbjct: 253 AELS 253

[Close]

BLAST of CsGy5G008630 vs. Swiss-Prot
Match: sp|Q689D6|RPD1_ARATH (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.4e-06
Identity = 40/155 (25.81%), Postives = 71/155 (45.81%), Query Frame = 0


Query: 37  VKNRSLDHIIDTETDLKAACLLKNAIKRSSTGFITAKSIANWQKLLGLTIPVIR---FIR 96
           V++   D+ ++ E  ++      + I       I    +    + LGL         F+ 
Sbjct: 47  VRDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARRLGLGFKQHEPGAFLL 106

Query: 97  RYPTLFHEFPHSRYANLPCFRMTDTAL--LLDQEEGSIHQFHESDTVERLCRVLMMMKTR 156
           ++P +F  + H     L C R+T  AL  +  + E  + Q    D V RL +++MM  T 
Sbjct: 107 KFPHVFEIYEHPVQRILYC-RLTRKALDQIRHEHEAVLDQI--PDAVTRLRKLVMMSNTG 166

Query: 157 TVPLQSLRPLEWDLGLPCDFERSLVPRYPDHFRLV 187
            + L+ +R    + GLP DFE S++ ++P  FRL+
Sbjct: 167 RIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLI 198

[Close]

BLAST of CsGy5G008630 vs. TrEMBL
Match: tr|A0A0A0KM36|A0A0A0KM36_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G218860 PE=4 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 5.6e-146
Identity = 278/404 (68.81%), Postives = 278/404 (68.81%), Query Frame = 0


Query: 1   MNNKFFSSLILQYRCQSPKLFLYHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKN 60
           MNNKFFSSLILQYRCQSPKLFLYHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKN
Sbjct: 1   MNNKFFSSLILQYRCQSPKLFLYHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKN 60

Query: 61  AIKRSSTGFITAKSIANWQKLLGLTIPVIRFIRRYPTLFHEFPHSRYANLPCFRMTDTAL 120
           AIKRSSTGFITAKSIANWQKLLGLTIPVIRFIRRYPTLFHEFPHSRYANLPCFRMTDTAL
Sbjct: 61  AIKRSSTGFITAKSIANWQKLLGLTIPVIRFIRRYPTLFHEFPHSRYANLPCFRMTDTAL 120

Query: 121 LLDQEEGSIHQFHESDTVERLCRVLMMMKTRTVPLQSLRPLEWDLGLPCDFERSLVPRYP 180
           LLDQEEGSIHQFHESDTVERLCRVLMMMKTRTVPLQSLRPLEWDLGLPCDFERSLVPRYP
Sbjct: 121 LLDQEEGSIHQFHESDTVERLCRVLMMMKTRTVPLQSLRPLEWDLGLPCDFERSLVPRYP 180

Query: 181 DHFRLVKASNGDWCLRLKEWREEFA----------------------------------- 240
           DHFRLVKASNGDWCLRLKEWREEFA                                   
Sbjct: 181 DHFRLVKASNGDWCLRLKEWREEFAVSALQRSNESSGLGDAYRQFKKGCTTLAFPQSFPR 240

Query: 241 ------------------------------------------------------------ 279
                                                                       
Sbjct: 241 GYGAQNKVKAWMEEFQKLPYISPYESCRQVDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300

[Close]

BLAST of CsGy5G008630 vs. TrEMBL
Match: tr|A0A1S3C3X3|A0A1S3C3X3_CUCME (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103496725 PE=4 SV=1)

HSP 1 Score: 493.8 bits (1270), Expect = 3.1e-136
Identity = 260/404 (64.36%), Postives = 268/404 (66.34%), Query Frame = 0


Query: 1   MNNKFFSSLILQYRCQSPKLFLYHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKN 60
           MNN FFSSLILQ RCQSPKLFLYHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKN
Sbjct: 1   MNNLFFSSLILQNRCQSPKLFLYHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKN 60

Query: 61  AIKRSSTGFITAKSIANWQKLLGLTIPVIRFIRRYPTLFHEFPHSRYANLPCFRMTDTAL 120
           AIKRSSTGFITAKSIANWQKLLGLTIPVIRFIRRYPTLFHEFPHSRY NLPCFR+TDTAL
Sbjct: 61  AIKRSSTGFITAKSIANWQKLLGLTIPVIRFIRRYPTLFHEFPHSRYTNLPCFRLTDTAL 120

Query: 121 LLDQEEGSIHQFHESDTVERLCRVLMMMKTRTVPLQSLRPLEWDLGLPCDFERSLVPRYP 180
           LLDQEE SIHQFHESDTVERLCRVLMMMKTR +PLQSLRPLEWDLGLPCDFERSLVPRYP
Sbjct: 121 LLDQEESSIHQFHESDTVERLCRVLMMMKTRVLPLQSLRPLEWDLGLPCDFERSLVPRYP 180

Query: 181 DHFRLVKASNGDWCLRLKEWREEFA----------------------------------- 240
           DHF+L KASNGDWCLRLKEWREEFA                                   
Sbjct: 181 DHFQLFKASNGDWCLRLKEWREEFAVSALQRSNESSGLGDAYRQFKRGCTTLAFPLSFPR 240

Query: 241 ------------------------------------------------------------ 279
                                                                       
Sbjct: 241 GYGAQNKVKAWMEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300

[Close]

BLAST of CsGy5G008630 vs. TrEMBL
Match: tr|A0A2P4IK82|A0A2P4IK82_QUESU (Protein root primordium defective 1 OS=Quercus suber OX=58331 GN=CFP56_41644 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 9.4e-93
Identity = 193/403 (47.89%), Postives = 233/403 (57.82%), Query Frame = 0


Query: 1   MNNKFFSSLILQYRCQSPKLFLYHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKN 60
           + + FF S++   +     L L  Q+RGIAKVRLKWVKNRSLDHIIDTETDLKAACLLK+
Sbjct: 5   LKHLFFFSILKPQKPALSNLHLLQQYRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKD 64

Query: 61  AIKRSSTGFITAKSIANWQKLLGLTIPVIRFIRRYPTLFHEFPHSRYANLPCFRMTDTAL 120
           AIKRS TGF+TAKS A+WQKLLGLT+PV+RF+RRYPTLFHEFPH+RYA+LPCF++TDTAL
Sbjct: 65  AIKRSPTGFLTAKSFADWQKLLGLTVPVLRFLRRYPTLFHEFPHTRYASLPCFKLTDTAL 124

Query: 121 LLDQEEGSIHQFHESDTVERLCRVLMMMKTRTVPLQSLRPLEWDLGLPCDFERSLVPRYP 180
           LLD +E SIH+  ESDTVERLC++LMMMKTRTV LQSL PL++DLGLP  F++ LVP+YP
Sbjct: 125 LLDSQEQSIHKNCESDTVERLCKLLMMMKTRTVSLQSLYPLKYDLGLPDSFDKILVPKYP 184

Query: 181 DHFRLVKASNGDWCLRLKEWREEFA----------------------------------- 240
           DHFR VKASNG  CLRL EWREE A                                   
Sbjct: 185 DHFRFVKASNGIVCLRLAEWREELAVSALEKSKENKKSSDEYRQFKSGKTSLVFSMSFPK 244

Query: 241 ------------------------------------------------------------ 278
                                                                       
Sbjct: 245 GYGGQKKVKAWMEEFQKLPYISPYEDSSRIDPNSELMEKRVVGVLHEILSLTIHKKTKRN 304

[Close]

BLAST of CsGy5G008630 vs. TrEMBL
Match: tr|A0A2N9FZJ1|A0A2N9FZJ1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20402 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 2.7e-92
Identity = 196/407 (48.16%), Postives = 234/407 (57.49%), Query Frame = 0


Query: 2   NNKFFSSLILQYRC---QSPKLFL-YHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACL 61
           N+ FF S++   +    + P L L  HQ+ GI KVRLKWVKNRSLDHIIDTETDLKAACL
Sbjct: 6   NHLFFISILKPLKATLSELPNLLLQQHQYHGITKVRLKWVKNRSLDHIIDTETDLKAACL 65

Query: 62  LKNAIKRSSTGFITAKSIANWQKLLGLTIPVIRFIRRYPTLFHEFPHSRYANLPCFRMTD 121
           LK+AIKRS TGF+TAKS A+WQKLLGLT+PV+RF+RRYPTLF EFPH+RYANLPCF++TD
Sbjct: 66  LKDAIKRSPTGFLTAKSFADWQKLLGLTVPVLRFLRRYPTLFQEFPHTRYANLPCFKLTD 125

Query: 122 TALLLDQEEGSIHQFHESDTVERLCRVLMMMKTRTVPLQSLRPLEWDLGLPCDFERSLVP 181
           TALLLD +E SIHQ  E+DTVE+LC+VLMMMKTRTVPLQSL PL++DLGLP +F++ LVP
Sbjct: 126 TALLLDSQEQSIHQNCETDTVEKLCKVLMMMKTRTVPLQSLYPLKYDLGLPDNFDKVLVP 185

Query: 182 RYPDHFRLVKASNGDWCLRLKEWREEFA-------------------------------- 241
           +YPDHFR VKASNG  CLRL EWREEFA                                
Sbjct: 186 KYPDHFRFVKASNGIVCLRLAEWREEFAVTALEKSNENRKSSDEYKQFKRGQTALAFPMS 245

Query: 242 ------------------------------------------------------------ 278
                                                                       
Sbjct: 246 FPRGYGAQKKVKAWMEEFQKLPYISPYEDSRRIDPNSELMEKRVVGVLHEMLSLTIHKKT 305

[Close]

BLAST of CsGy5G008630 vs. TrEMBL
Match: tr|A0A061EWX3|A0A061EWX3_THECC (Ubiquitin carboxyl-terminal hydrolase family protein OS=Theobroma cacao OX=3641 GN=TCM_025005 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 4.7e-92
Identity = 187/384 (48.70%), Postives = 220/384 (57.29%), Query Frame = 0


Query: 23  YHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKNAIKRSSTGFITAKSIANWQKLL 82
           + QWR I KVRLKWVKNRSLDH+IDTETDLKAACLLK+AIKRS TGF+TAKS A+WQKLL
Sbjct: 22  HQQWRSIVKVRLKWVKNRSLDHVIDTETDLKAACLLKDAIKRSPTGFLTAKSFADWQKLL 81

Query: 83  GLTIPVIRFIRRYPTLFHEFPHSRYANLPCFRMTDTALLLDQEEGSIHQFHESDTVERLC 142
           GLT+PV+RF+RRYPTLF EFPH+RYANLPCFR+T TALLLD +E SIHQ HESDT+ERLC
Sbjct: 82  GLTVPVLRFLRRYPTLFEEFPHARYANLPCFRLTGTALLLDSQEQSIHQAHESDTIERLC 141

Query: 143 RVLMMMKTRTVPLQSLRPLEWDLGLPCDFERSLVPRYPDHFRLVKASNGDWCLRLKEWRE 202
           R+LMMMK+RT PLQSL PL+WDLGLP +FE+ L+P++PDHFR VKA  G   +RL +WRE
Sbjct: 142 RLLMMMKSRTAPLQSLHPLKWDLGLPDNFEKVLIPKFPDHFRFVKAPIGVAAVRLVQWRE 201

Query: 203 EFA--------------------------------------------------------- 262
           E A                                                         
Sbjct: 202 ELAVSALERSNEVGEMGDEYRQFKRGQTTLAFLMNFPRGYGAQKKVRAWMEEFQKLPYIS 261

Query: 263 ------------------------------------------------------------ 280
                                                                       
Sbjct: 262 PYDDSRHIDPNSELMEKRAVGVLHEFLSLTIHKKTKRNYLRSLREELNIPHKFTRLFTRY 321

The following BLAST results are available for this feature:

BLAST of CsGy5G008630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655033.1	8.5e-146	68.81	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus] >KGN50720.1 hyp...	[more]
XP_008456922.1	4.7e-136	64.36	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo]	[more]
XP_023543563.1	1.6e-115	57.67	protein WHAT'S THIS FACTOR 1 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_023543562.1	1.6e-115	57.67	protein WHAT'S THIS FACTOR 1 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022156041.1	2.2e-114	55.69	protein ROOT PRIMORDIUM DEFECTIVE 1 [Momordica charantia]	[more]

BLAST of CsGy5G008630 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G58520.1	1.8e-89	46.35	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT5G48040.1	2.1e-29	37.24	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT1G71850.1	5.1e-20	29.94	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT4G24320.1	8.2e-18	33.33	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT5G45790.2	2.6e-16	29.15	Ubiquitin carboxyl-terminal hydrolase family protein	[more]

BLAST of CsGy5G008630 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q65XL5\|WTF1_ORYSJ	5.2e-14	26.61	Protein WHAT'S THIS FACTOR 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
sp\|B6TTV8\|WTF1_MAIZE	7.6e-13	27.17	Protein WHAT'S THIS FACTOR 1 OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1	[more]
sp\|A0MFS5\|WTF1_ARATH	4.2e-11	25.54	Protein WHAT'S THIS FACTOR 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At4g0103...	[more]
sp\|Q689D6\|RPD1_ARATH	2.4e-06	25.81	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1...	[more]

BLAST of CsGy5G008630 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KM36\|A0A0A0KM36_CUCSA	5.6e-146	68.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G218860 PE=4 SV=1	[more]
tr\|A0A1S3C3X3\|A0A1S3C3X3_CUCME	3.1e-136	64.36	protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103496725 PE=4...	[more]
tr\|A0A2P4IK82\|A0A2P4IK82_QUESU	9.4e-93	47.89	Protein root primordium defective 1 OS=Quercus suber OX=58331 GN=CFP56_41644 PE=...	[more]
tr\|A0A2N9FZJ1\|A0A2N9FZJ1_FAGSY	2.7e-92	48.16	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20402 PE=4 SV=1	[more]
tr\|A0A061EWX3\|A0A061EWX3_THECC	4.7e-92	48.70	Ubiquitin carboxyl-terminal hydrolase family protein OS=Theobroma cacao OX=3641 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021099	PORR_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G008630.1	CsGy5G008630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021099	Plant organelle RNA recognition domain	PFAM	PF11955	PORR	coord: 206..242 e-value: 6.8E-7 score: 28.4 coord: 37..206 e-value: 1.3E-48 score: 165.5
None	No IPR available	PANTHER	PTHR31476:SF10	SUBFAMILY NOT NAMED	coord: 23..205
None	No IPR available	PANTHER	PTHR31476:SF10	SUBFAMILY NOT NAMED	coord: 205..280
None	No IPR available	PANTHER	PTHR31476	FAMILY NOT NAMED	coord: 23..205
None	No IPR available	PANTHER	PTHR31476	FAMILY NOT NAMED	coord: 205..280

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G008630	Csa5G218850	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G008630	MELO3C020117	Melon (DHL92) v3.5.1	cgybmeB320
CsGy5G008630	CSPI05G11360	Wild cucumber (PI 183967)	cgybcpiB226
CsGy5G008630	MELO3C020117.2	Melon (DHL92) v3.6.1	cgybmedB311
CsGy5G008630	CsaV3_5G010780	Cucumber (Chinese Long) v3	cgybcucB232

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G008630	Cucumber (Gy14) v2	cgybcgybB145
CsGy5G008630	Cucurbita maxima (Rimu)	cgybcmaB673
CsGy5G008630	Cucurbita maxima (Rimu)	cgybcmaB674
CsGy5G008630	Cucurbita moschata (Rifu)	cgybcmoB651
CsGy5G008630	Cucurbita moschata (Rifu)	cgybcmoB652
CsGy5G008630	Cucurbita pepo (Zucchini)	cgybcpeB646
CsGy5G008630	Cucurbita pepo (Zucchini)	cgybcpeB647
CsGy5G008630	Bottle gourd (USVL1VR-Ls)	cgyblsiB338
CsGy5G008630	Watermelon (Charleston Gray)	cgybwcgB369
CsGy5G008630	Watermelon (97103) v1	cgybwmB359
CsGy5G008630	Silver-seed gourd	carcgybB0670
CsGy5G008630	Silver-seed gourd	carcgybB0898
CsGy5G008630	Cucumber (Chinese Long) v3	cgybcucB242
CsGy5G008630	Watermelon (97103) v2	cgybwmbB347
CsGy5G008630	Watermelon (97103) v2	cgybwmbB375
CsGy5G008630	Wax gourd	cgybwgoB469
CsGy5G008630	Wax gourd	cgybwgoB487