Csa5G171680 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G171680
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Transcription factor MYBL1
Location	Chr5 : 6863328 .. 6863716 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGATAGATCCAGCAACACACCAACCTCTGAAAAAGCAACAAACAGAGAGCAGCAGCCAAGGAAGCTCAACTGATTCCTCAGTAGCCATAACTACTCCATTATCAGAAGCAAATAGCACTACAAAAGAACAGCCATTAAGCAGCCATATTTGGATGGAAGCTCTTGAAGATGAATCATGGTGGAATTTCCCAACATGGGGAAGTGAAATCTACAGTGATTTTGGATTATATTCTTCAGAGGATAGCTTGAATCGGTTGTTGGATTACTACAAAGAGCTTGGAGATGAGGATTTTGAGTTGAGTTCTTTGGGGGACTTTAACAAACATTTGGTGAGCATTGCAGAAAAAAACTGATGAAAATATTTCAACATTTCACTTGATCAGTT

mRNA sequence

ATGGGGATAGATCCAGCAACACACCAACCTCTGAAAAAGCAACAAACAGAGAGCAGCAGCCAAGGAAGCTCAACTGATTCCTCAGTAGCCATAACTACTCCATTATCAGAAGCAAATAGCACTACAAAAGAACAGCCATTAAGCAGCCATATTTGGATGGAAGCTCTTGAAGATGAATCATGGTGGAATTTCCCAACATGGGGAAGTGAAATCTACAGTGATTTTGGATTATATTCTTCAGAGGATAGCTTGAATCGGTTGTTGGATTACTACAAAGAGCTTGGAGATGAGGATTTTGAGTTGAGTTCTTTGGGGGACTTTAACAAACATTTGGTGAGCATTGCAGAAAAAAACTGA

Coding sequence (CDS)

ATGGGGATAGATCCAGCAACACACCAACCTCTGAAAAAGCAACAAACAGAGAGCAGCAGCCAAGGAAGCTCAACTGATTCCTCAGTAGCCATAACTACTCCATTATCAGAAGCAAATAGCACTACAAAAGAACAGCCATTAAGCAGCCATATTTGGATGGAAGCTCTTGAAGATGAATCATGGTGGAATTTCCCAACATGGGGAAGTGAAATCTACAGTGATTTTGGATTATATTCTTCAGAGGATAGCTTGAATCGGTTGTTGGATTACTACAAAGAGCTTGGAGATGAGGATTTTGAGTTGAGTTCTTTGGGGGACTTTAACAAACATTTGGTGAGCATTGCAGAAAAAAACTGA

Protein sequence

MGIDPATHQPLKKQQTESSSQGSSTDSSVAITTPLSEANSTTKEQPLSSHIWMEALEDESWWNFPTWGSEIYSDFGLYSSEDSLNRLLDYYKELGDEDFELSSLGDFNKHLVSIAEKN*

Homology

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BLAST of Csa5G171680 vs. TrEMBL
Match: A0A0A0KRN9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171680 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.0e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MGIDPATHQPLKKQQTESSSQGSSTDSSVAITTPLSEANSTTKEQPLSSHIWMEALEDES 60
           MGIDPATHQPLKKQQTESSSQGSSTDSSVAITTPLSEANSTTKEQPLSSHIWMEALEDES
Sbjct: 1   MGIDPATHQPLKKQQTESSSQGSSTDSSVAITTPLSEANSTTKEQPLSSHIWMEALEDES 60

Query: 61  WWNFPTWGSEIYSDFGLYSSEDSLNRLLDYYKELGDEDFELSSLGDFNKHLVSIAEKN 119
           WWNFPTWGSEIYSDFGLYSSEDSLNRLLDYYKELGDEDFELSSLGDFNKHLVSIAEKN
Sbjct: 61  WWNFPTWGSEIYSDFGLYSSEDSLNRLLDYYKELGDEDFELSSLGDFNKHLVSIAEKN 118

[Close]

BLAST of Csa5G171680 vs. TrEMBL
Match: A0A0E4B9M8_9ROSI (MYB transcriptional factor OS=Populus tremula x Populus tremuloides GN=PtxtMYB075 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-10
Identity = 55/158 (34.81%), Postives = 69/158 (43.67%), Query Frame = 1


Query: 1   MGIDPATHQPLKKQQTESSSQG---------------------------SSTDSSVAITT 60
           MGIDP TH+PL KQ +   S G                           SST  + + TT
Sbjct: 120 MGIDPVTHEPLNKQGSPQESTGPCHSNYDQPNLNADGQQVPPQNCGRASSSTTDNSSTTT 179

Query: 61  PL-----------SEANSTTKEQPLSSHIWMEALEDESWWNFPTWGSEIYSDFGL--YSS 119
           P            SE NS T   PL S IW E   D+S WNF       YS+FGL   SS
Sbjct: 180 PTENSSVDECIGSSEPNSATDSDPLMSCIWSEVFLDDSSWNFQATRGGDYSEFGLSKSSS 239

[Close]

BLAST of Csa5G171680 vs. TrEMBL
Match: C9W8J7_POPCA (Transcription factor MYBL1 OS=Populus canadensis GN=MYBL1 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-10
Identity = 53/158 (33.54%), Postives = 70/158 (44.30%), Query Frame = 1


Query: 1   MGIDPATHQPLKKQQTESSS---------------------------QGSSTDSSVAITT 60
           MGIDP TH+PL KQ++   S                             SST  + + TT
Sbjct: 119 MGIDPVTHEPLNKQESPQESIVPCHTNYDQPNFNADGQQVLPQNSGHASSSTTDNSSTTT 178

Query: 61  PL-----------SEANSTTKEQPLSSHIWMEALEDESWWNFPTWGSEIYSDFGL--YSS 119
           P            SE NSTT   PL S +W E   D+S WNF       YS+FGL   SS
Sbjct: 179 PTENSSVDECIGSSEPNSTTDSDPLMSCLWSEVFLDDSSWNFQATRGGDYSEFGLSKSSS 238

[Close]

BLAST of Csa5G171680 vs. TrEMBL
Match: B9I4L5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s14540g PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.9e-09
Identity = 52/158 (32.91%), Postives = 68/158 (43.04%), Query Frame = 1


Query: 1   MGIDPATHQPLKKQQTESSSQ---------------------------GSSTDSSVAITT 60
           MGIDP TH+PL K ++   S                             SST  + + TT
Sbjct: 119 MGIDPVTHEPLNKLESPQESTVPCHTNYDQPNFNADGQQVLPQNCGHASSSTTDNSSTTT 178

Query: 61  PL-----------SEANSTTKEQPLSSHIWMEALEDESWWNFPTWGSEIYSDFGL--YSS 119
           P            SE NST    PL S IW E   D+S WNF       +S+FGL   SS
Sbjct: 179 PTENSSVDECIGSSEPNSTPDSDPLMSCIWSEVFLDDSSWNFQASRGGDFSEFGLSKSSS 238

[Close]

BLAST of Csa5G171680 vs. TrEMBL
Match: V5K8K7_9ROSI (MYB transcription factor 2 OS=Betula luminifera GN=MYB2 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.3e-07
Identity = 50/133 (37.59%), Postives = 65/133 (48.87%), Query Frame = 1


Query: 1   MGIDPATHQPLKKQQTESSSQGSST---------------DSSVAITTPLSEANSTTKEQ 60
           MGIDP TH+PL+K+ T   +   ST               + S  I  P +E +ST + +
Sbjct: 119 MGIDPLTHEPLQKEDTPQQTFCHSTTADDDLDLEVINHEQEESQKICAP-TENSSTDESR 178

Query: 61  PLS---------SHIWMEALE-DESWWNFPTWGSEIYSDFGLYSSEDSLNR-LLDYYKEL 107
            LS         S+IW E +  D+S+WN P   S  Y   GL SSED  +R LLDY K+ 
Sbjct: 179 SLSDPGDDDLLMSYIWSETIFLDDSFWNSPA-ASGSYGSLGLPSSEDDSDRWLLDYKKDF 238

[Close]

BLAST of Csa5G171680 vs. NCBI nr
Match: gi|700195209|gb|KGN50386.1| (hypothetical protein Csa_5G171680 [Cucumis sativus])

HSP 1 Score: 243.8 bits (621), Expect = 1.5e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MGIDPATHQPLKKQQTESSSQGSSTDSSVAITTPLSEANSTTKEQPLSSHIWMEALEDES 60
           MGIDPATHQPLKKQQTESSSQGSSTDSSVAITTPLSEANSTTKEQPLSSHIWMEALEDES
Sbjct: 1   MGIDPATHQPLKKQQTESSSQGSSTDSSVAITTPLSEANSTTKEQPLSSHIWMEALEDES 60

Query: 61  WWNFPTWGSEIYSDFGLYSSEDSLNRLLDYYKELGDEDFELSSLGDFNKHLVSIAEKN 119
           WWNFPTWGSEIYSDFGLYSSEDSLNRLLDYYKELGDEDFELSSLGDFNKHLVSIAEKN
Sbjct: 61  WWNFPTWGSEIYSDFGLYSSEDSLNRLLDYYKELGDEDFELSSLGDFNKHLVSIAEKN 118

[Close]

BLAST of Csa5G171680 vs. NCBI nr
Match: gi|449451932|ref|XP_004143714.1| (PREDICTED: protein ODORANT1 [Cucumis sativus])

HSP 1 Score: 243.8 bits (621), Expect = 1.5e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MGIDPATHQPLKKQQTESSSQGSSTDSSVAITTPLSEANSTTKEQPLSSHIWMEALEDES 60
           MGIDPATHQPLKKQQTESSSQGSSTDSSVAITTPLSEANSTTKEQPLSSHIWMEALEDES
Sbjct: 119 MGIDPATHQPLKKQQTESSSQGSSTDSSVAITTPLSEANSTTKEQPLSSHIWMEALEDES 178

Query: 61  WWNFPTWGSEIYSDFGLYSSEDSLNRLLDYYKELGDEDFELSSLGDFNKHLVSIAEKN 119
           WWNFPTWGSEIYSDFGLYSSEDSLNRLLDYYKELGDEDFELSSLGDFNKHLVSIAEKN
Sbjct: 179 WWNFPTWGSEIYSDFGLYSSEDSLNRLLDYYKELGDEDFELSSLGDFNKHLVSIAEKN 236

[Close]

BLAST of Csa5G171680 vs. NCBI nr
Match: gi|659073120|ref|XP_008467265.1| (PREDICTED: protein ODORANT1 [Cucumis melo])

HSP 1 Score: 219.9 bits (559), Expect = 2.3e-54
Identity = 109/119 (91.60%), Postives = 113/119 (94.96%), Query Frame = 1


Query: 1   MGIDPATHQPLKKQQTESSSQGSSTDSSVAITTPLSEANSTTKEQPLSSHIWMEALE-DE 60
           MGIDP THQPLKKQQTESSSQGSSTDSSVAITTPLSEANS  KEQPLS+HIWMEAL+ DE
Sbjct: 119 MGIDPVTHQPLKKQQTESSSQGSSTDSSVAITTPLSEANSNAKEQPLSNHIWMEALDQDE 178

Query: 61  SWWNFPTWGSEIYSDFGLYSSEDSLNRLLDYYKELGDEDFELSSLGDFNKHLVSIAEKN 119
           SWWNFPTWG+EIYSDFGLYSSEDSLNRLLDYYKELGDEDFELSSLGDFN+ LV IAEKN
Sbjct: 179 SWWNFPTWGTEIYSDFGLYSSEDSLNRLLDYYKELGDEDFELSSLGDFNR-LVGIAEKN 236

[Close]

BLAST of Csa5G171680 vs. NCBI nr
Match: gi|803433982|dbj|BAR45575.1| (MYB transcriptional factor [Populus tremula x Populus tremuloides])

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-10
Identity = 55/158 (34.81%), Postives = 69/158 (43.67%), Query Frame = 1


Query: 1   MGIDPATHQPLKKQQTESSSQG---------------------------SSTDSSVAITT 60
           MGIDP TH+PL KQ +   S G                           SST  + + TT
Sbjct: 120 MGIDPVTHEPLNKQGSPQESTGPCHSNYDQPNLNADGQQVPPQNCGRASSSTTDNSSTTT 179

Query: 61  PL-----------SEANSTTKEQPLSSHIWMEALEDESWWNFPTWGSEIYSDFGL--YSS 119
           P            SE NS T   PL S IW E   D+S WNF       YS+FGL   SS
Sbjct: 180 PTENSSVDECIGSSEPNSATDSDPLMSCIWSEVFLDDSSWNFQATRGGDYSEFGLSKSSS 239

[Close]

BLAST of Csa5G171680 vs. NCBI nr
Match: gi|225544596|gb|ACN91625.1| (transcription factor MYBL1 [Populus x canadensis])

HSP 1 Score: 72.8 bits (177), Expect = 4.6e-10
Identity = 53/158 (33.54%), Postives = 70/158 (44.30%), Query Frame = 1


Query: 1   MGIDPATHQPLKKQQTESSS---------------------------QGSSTDSSVAITT 60
           MGIDP TH+PL KQ++   S                             SST  + + TT
Sbjct: 119 MGIDPVTHEPLNKQESPQESIVPCHTNYDQPNFNADGQQVLPQNSGHASSSTTDNSSTTT 178

Query: 61  PL-----------SEANSTTKEQPLSSHIWMEALEDESWWNFPTWGSEIYSDFGL--YSS 119
           P            SE NSTT   PL S +W E   D+S WNF       YS+FGL   SS
Sbjct: 179 PTENSSVDECIGSSEPNSTTDSDPLMSCLWSEVFLDDSSWNFQATRGGDYSEFGLSKSSS 238

The following BLAST results are available for this feature:

BLAST of Csa5G171680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRN9_CUCSA	1.0e-61	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171680 PE=4 SV=1	[more]
A0A0E4B9M8_9ROSI	1.4e-10	34.81	MYB transcriptional factor OS=Populus tremula x Populus tremuloides GN=PtxtMYB07...	[more]
C9W8J7_POPCA	3.2e-10	33.54	Transcription factor MYBL1 OS=Populus canadensis GN=MYBL1 PE=2 SV=1	[more]
B9I4L5_POPTR	7.9e-09	32.91	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s14540g PE=4 SV=1	[more]
V5K8K7_9ROSI	3.3e-07	37.59	MYB transcription factor 2 OS=Betula luminifera GN=MYB2 PE=2 SV=1	[more]

BLAST of Csa5G171680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195209\|gb\|KGN50386.1\|	1.5e-61	100.00	hypothetical protein Csa_5G171680 [Cucumis sativus]	[more]
gi\|449451932\|ref\|XP_004143714.1\|	1.5e-61	100.00	PREDICTED: protein ODORANT1 [Cucumis sativus]	[more]
gi\|659073120\|ref\|XP_008467265.1\|	2.3e-54	91.60	PREDICTED: protein ODORANT1 [Cucumis melo]	[more]
gi\|803433982\|dbj\|BAR45575.1\|	2.1e-10	34.81	MYB transcriptional factor [Populus tremula x Populus tremuloides]	[more]
gi\|225544596\|gb\|ACN91625.1\|	4.6e-10	33.54	transcription factor MYBL1 [Populus x canadensis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G171680.1	Csa5G171680.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G171680	Cla003566	Watermelon (97103) v1	cuwmB415
Csa5G171680	MELO3C005406	Melon (DHL92) v3.5.1	cumeB359
Csa5G171680	ClCG01G005200	Watermelon (Charleston Gray)	cuwcgB364
Csa5G171680	MELO3C005406.2	Melon (DHL92) v3.6.1	cumedB339
Csa5G171680	Cla97C01G005430	Watermelon (97103) v2	cuwmbB336
Csa5G171680	Bhi12G000518	Wax gourd	cuwgoB442
Csa5G171680	CSPI05G08080	Wild cucumber (PI 183967)	cpicuB240
Csa5G171680	Cucsa.115620	Cucumber (Gy14) v1	cgycuB147
Csa5G171680	CmaCh15G013880	Cucurbita maxima (Rimu)	cmacuB291
Csa5G171680	CmoCh15G014530	Cucurbita moschata (Rifu)	cmocuB278
Csa5G171680	Cp4.1LG13g00790	Cucurbita pepo (Zucchini)	cpecuB186
Csa5G171680	Carg20791	Silver-seed gourd	carcuB0756

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G171680	Melon (DHL92) v3.5.1	cumeB403
Csa5G171680	Watermelon (97103) v1	cuwmB400
Csa5G171680	Cucurbita pepo (Zucchini)	cpecuB737
Csa5G171680	Bottle gourd (USVL1VR-Ls)	culsiB322
Csa5G171680	Bottle gourd (USVL1VR-Ls)	culsiB380
Csa5G171680	Cucumber (Gy14) v2	cgybcuB127
Csa5G171680	Cucumber (Gy14) v2	cgybcuB224
Csa5G171680	Melon (DHL92) v3.6.1	cumedB387
Csa5G171680	Silver-seed gourd	carcuB0733
Csa5G171680	Wax gourd	cuwgoB444
Csa5G171680	Cucumber (Gy14) v1	cgycuB370
Csa5G171680	Cucurbita maxima (Rimu)	cmacuB609
Csa5G171680	Cucurbita moschata (Rifu)	cmocuB599