Csa5G152880 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G152880
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 4873185 .. 4874008 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTAATGGGTTGGTTCTTTCTCTGATCACTGGAGGCCTCATTCCTTGGTATTGGTTAGTTAGGATCTTCTTCCTTCCTAAACCAGGAGCTTCCTATGGAGGACCCAATGTACCTGAGGTTAGGTTGGAAGAAGATAATAAATGCTATATATTGTAATTCCTCTTATCTTTACCTTCTTTCTCTTTGAAATGAGCTTGACATTCGTTTCAGTTTCACCACTCGTGTTTCTGAATCTCTGGCATCTGTGAGTTTTAGAATAATCTGTGGAGATTCAAAAGTCATAGCTGAACAGTCATTGAGTTACGGTTGAAATGCTCTTGTTTATCTGTATTGAAGATCAAGTCCAATGGGTTAAGATTGTTCTGTTCTGTTTTATTATTGGTCTGACTTTGCAACGGTCTTCGAGTTGACTTCATCTTATTATTCTCTTTAATAATCTTGGATCTAGATACCTTTTATGGAGAAAGAAAAAAAGAATTAGTTTACCATTCAAATGTTTTAAAAACTGACTTAGTGGGAGAGATCTAAACGCGTTATCGATCAAATGTTTTCTTTAGGTTGTTGAATCTTTCATTCCAGTAGATATTCGCTAGTGAAACGTTATCTCACTTGAAGCTTTACTCTTGCAGTCACACGTAACAAAACGAAACGAAACAGATGTCATCGGCAAAGGCAATTCCCAAGAGGAGTGTACAAAGGATGATACCGAAACTCGTACTGTTAAATACGACAAGCGAAGATTTGATCTACCAATCCGTGTTTGCCCTCTGCCTTGTCATTTGATATGTTGCAAGAAGAGAAAGGGAGAGAAACAAGTGTGA

mRNA sequence

ATGACTAATGGGTTGGTTCTTTCTCTGATCACTGGAGGCCTCATTCCTTGGTATTGGTTAGTTAGGATCTTCTTCCTTCCTAAACCAGGAGCTTCCTATGGAGGACCCAATGTACCTGAGTCACACGTAACAAAACGAAACGAAACAGATGTCATCGGCAAAGGCAATTCCCAAGAGGAGTGTACAAAGGATGATACCGAAACTCGTACTGTTAAATACGACAAGCGAAGATTTGATCTACCAATCCGTGTTTGCCCTCTGCCTTGTCATTTGATATGTTGCAAGAAGAGAAAGGGAGAGAAACAAGTGTGA

Coding sequence (CDS)

ATGACTAATGGGTTGGTTCTTTCTCTGATCACTGGAGGCCTCATTCCTTGGTATTGGTTAGTTAGGATCTTCTTCCTTCCTAAACCAGGAGCTTCCTATGGAGGACCCAATGTACCTGAGTCACACGTAACAAAACGAAACGAAACAGATGTCATCGGCAAAGGCAATTCCCAAGAGGAGTGTACAAAGGATGATACCGAAACTCGTACTGTTAAATACGACAAGCGAAGATTTGATCTACCAATCCGTGTTTGCCCTCTGCCTTGTCATTTGATATGTTGCAAGAAGAGAAAGGGAGAGAAACAAGTGTGA

Protein sequence

MTNGLVLSLITGGLIPWYWLVRIFFLPKPGASYGGPNVPESHVTKRNETDVIGKGNSQEECTKDDTETRTVKYDKRRFDLPIRVCPLPCHLICCKKRKGEKQV*
Homology
[Close]
BLAST of Csa5G152880 vs. TrEMBL
Match: A0A0A0KKH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152880 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.3e-55
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MTNGLVLSLITGGLIPWYWLVRIFFLPKPGASYGGPNVPESHVTKRNETDVIGKGNSQEE 60
           MTNGLVLSLITGGLIPWYWLVRIFFLPKPGASYGGPNVPESHVTKRNETDVIGKGNSQEE
Sbjct: 1   MTNGLVLSLITGGLIPWYWLVRIFFLPKPGASYGGPNVPESHVTKRNETDVIGKGNSQEE 60

Query: 61  CTKDDTETRTVKYDKRRFDLPIRVCPLPCHLICCKKRKGEKQV 104
           CTKDDTETRTVKYDKRRFDLPIRVCPLPCHLICCKKRKGEKQV
Sbjct: 61  CTKDDTETRTVKYDKRRFDLPIRVCPLPCHLICCKKRKGEKQV 103

[Close]
BLAST of Csa5G152880 vs. NCBI nr
Match: gi|700194896|gb|KGN50073.1| (hypothetical protein Csa_5G152880 [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 1.8e-55
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MTNGLVLSLITGGLIPWYWLVRIFFLPKPGASYGGPNVPESHVTKRNETDVIGKGNSQEE 60
           MTNGLVLSLITGGLIPWYWLVRIFFLPKPGASYGGPNVPESHVTKRNETDVIGKGNSQEE
Sbjct: 1   MTNGLVLSLITGGLIPWYWLVRIFFLPKPGASYGGPNVPESHVTKRNETDVIGKGNSQEE 60

Query: 61  CTKDDTETRTVKYDKRRFDLPIRVCPLPCHLICCKKRKGEKQV 104
           CTKDDTETRTVKYDKRRFDLPIRVCPLPCHLICCKKRKGEKQV
Sbjct: 61  CTKDDTETRTVKYDKRRFDLPIRVCPLPCHLICCKKRKGEKQV 103

The following BLAST results are available for this feature:
BLAST of Csa5G152880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKH7_CUCSA1.3e-55100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152880 PE=4 SV=1[more]
BLAST of Csa5G152880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194896|gb|KGN50073.1|1.8e-55100.00hypothetical protein Csa_5G152880 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G152880.1Csa5G152880.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G152880CSPI05G05180Wild cucumber (PI 183967)cpicuB240
Csa5G152880CsGy5G002470Cucumber (Gy14) v2cgybcuB224
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G152880Melon (DHL92) v3.5.1cumeB357
Csa5G152880Melon (DHL92) v3.5.1cumeB385
Csa5G152880Melon (DHL92) v3.5.1cumeB404
Csa5G152880Watermelon (Charleston Gray)cuwcgB364
Csa5G152880Watermelon (Charleston Gray)cuwcgB393
Csa5G152880Watermelon (Charleston Gray)cuwcgB399
Csa5G152880Watermelon (97103) v1cuwmB399
Csa5G152880Watermelon (97103) v1cuwmB407
Csa5G152880Watermelon (97103) v1cuwmB408
Csa5G152880Cucurbita pepo (Zucchini)cpecuB174
Csa5G152880Cucurbita pepo (Zucchini)cpecuB736
Csa5G152880Bottle gourd (USVL1VR-Ls)culsiB322
Csa5G152880Bottle gourd (USVL1VR-Ls)culsiB333
Csa5G152880Bottle gourd (USVL1VR-Ls)culsiB381
Csa5G152880Cucumber (Gy14) v2cgybcuB126
Csa5G152880Cucumber (Gy14) v2cgybcuB278
Csa5G152880Melon (DHL92) v3.6.1cumedB336
Csa5G152880Melon (DHL92) v3.6.1cumedB369
Csa5G152880Melon (DHL92) v3.6.1cumedB388
Csa5G152880Silver-seed gourdcarcuB0939
Csa5G152880Silver-seed gourdcarcuB0954
Csa5G152880Watermelon (97103) v2cuwmbB336
Csa5G152880Watermelon (97103) v2cuwmbB382
Csa5G152880Watermelon (97103) v2cuwmbB389
Csa5G152880Wax gourdcuwgoB451
Csa5G152880Cucumber (Chinese Long) v2cucuB097
Csa5G152880Cucumber (Chinese Long) v2cucuB164
Csa5G152880Cucumber (Gy14) v1cgycuB194
Csa5G152880Cucumber (Gy14) v1cgycuB434
Csa5G152880Cucurbita maxima (Rimu)cmacuB298
Csa5G152880Cucurbita maxima (Rimu)cmacuB366
Csa5G152880Cucurbita maxima (Rimu)cmacuB608
Csa5G152880Cucurbita moschata (Rifu)cmocuB286
Csa5G152880Cucurbita moschata (Rifu)cmocuB598