CSPI05G05180 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G05180
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 4846787 .. 4847607 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAACTAATGGGTTGGTTCTTTCTCTGATCACTGGAGGCCTCATTCCTTGGTATTGGTTAGTTAGGATCTTCTTCCTTCCTAAACCAGGAGCTTCCTATGGAGGACCCAATGTACCTGAGGTTAGGTTGGAAGAAGATAATAAATGCTATATATTGTAATTCCTCTTATCTTTACCTTCTTTCTCTTTGAAATGAGCTTGACATTCGTTTCAGTTTCACCACTCGTGTTTCTGAATTTCTGGCATCTGTGAGTTTTAGAATAATCTGTGGAGATTCAAAAGTCATAGCTGAACAGTCATTGAGTTATGGTTGAAATGCTCTTGTTTATCTGTATTGAAGATCAAGTCCAATGGGTTAAGATTGTTCTGTTCTGTTTTATTATTGGTCAGACTTTGCAAGGGTCTTCGAGTTGACTTCATCTTATTATTCTCTTTAATAATCTTGGATCTAGATACCTTTTATGGAGAAAGAAAAAAAGAATTAGTTTACCATTCAAATGTTTTAAAAACTGACTTAGTGGGAGAGATCTAAACGCGTTATCGATCAAATGTTTTCTTTAGGTTGTTGAATCTTTCATTCCAGTAGATATTCGCTAGTGAAACGTTATCTCACTTGAAGCTTTACTCTTGCAGTCACACGTAACAAAACGAAACGAAACAGATGTCATCGGCAAAGGCAATTCCCAAGAGGAGTGTGCAAAGGATGATACCGAAACTCGTACTATTAAATACGACAAGCGAAGATTTGATCGACCAATCCGTGTTTGTCCTCTGCCTTGTCATTTGATTTGTTGCAAGAAGAGAAAGGGAGAGAAACAAGTG

mRNA sequence

ATAACTAATGGGTTGGTTCTTTCTCTGATCACTGGAGGCCTCATTCCTTGGTATTGGTTAGTTAGGATCTTCTTCCTTCCTAAACCAGGAGCTTCCTATGGAGGACCCAATGTACCTGAGTCACACGTAACAAAACGAAACGAAACAGATGTCATCGGCAAAGGCAATTCCCAAGAGGAGTGTGCAAAGGATGATACCGAAACTCGTACTATTAAATACGACAAGCGAAGATTTGATCGACCAATCCGTGTTTGTCCTCTGCCTTGTCATTTGATTTGTTGCAAGAAGAGAAAGGGAGAGAAACAAGTG

Coding sequence (CDS)

ATAACTAATGGGTTGGTTCTTTCTCTGATCACTGGAGGCCTCATTCCTTGGTATTGGTTAGTTAGGATCTTCTTCCTTCCTAAACCAGGAGCTTCCTATGGAGGACCCAATGTACCTGAGTCACACGTAACAAAACGAAACGAAACAGATGTCATCGGCAAAGGCAATTCCCAAGAGGAGTGTGCAAAGGATGATACCGAAACTCGTACTATTAAATACGACAAGCGAAGATTTGATCGACCAATCCGTGTTTGTCCTCTGCCTTGTCATTTGATTTGTTGCAAGAAGAGAAAGGGAGAGAAACAAGTG
Homology
[Close]
BLAST of CSPI05G05180 vs. TrEMBL
Match: A0A0A0KKH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152880 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 3.5e-53
Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 1 

Query: 1   ITNGLVLSLITGGLIPWYWLVRIFFLPKPGASYGGPNVPESHVTKRNETDVIGKGNSQEE 60
           +TNGLVLSLITGGLIPWYWLVRIFFLPKPGASYGGPNVPESHVTKRNETDVIGKGNSQEE
Sbjct: 1   MTNGLVLSLITGGLIPWYWLVRIFFLPKPGASYGGPNVPESHVTKRNETDVIGKGNSQEE 60

Query: 61  CAKDDTETRTIKYDKRRFDRPIRVCPLPCHLICCKKRKGEKQV 104
           C KDDTETRT+KYDKRRFD PIRVCPLPCHLICCKKRKGEKQV
Sbjct: 61  CTKDDTETRTVKYDKRRFDLPIRVCPLPCHLICCKKRKGEKQV 103

[Close]
BLAST of CSPI05G05180 vs. NCBI nr
Match: gi|700194896|gb|KGN50073.1| (hypothetical protein Csa_5G152880 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 5.0e-53
Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 1 

Query: 1   ITNGLVLSLITGGLIPWYWLVRIFFLPKPGASYGGPNVPESHVTKRNETDVIGKGNSQEE 60
           +TNGLVLSLITGGLIPWYWLVRIFFLPKPGASYGGPNVPESHVTKRNETDVIGKGNSQEE
Sbjct: 1   MTNGLVLSLITGGLIPWYWLVRIFFLPKPGASYGGPNVPESHVTKRNETDVIGKGNSQEE 60

Query: 61  CAKDDTETRTIKYDKRRFDRPIRVCPLPCHLICCKKRKGEKQV 104
           C KDDTETRT+KYDKRRFD PIRVCPLPCHLICCKKRKGEKQV
Sbjct: 61  CTKDDTETRTVKYDKRRFDLPIRVCPLPCHLICCKKRKGEKQV 103

The following BLAST results are available for this feature:
BLAST of CSPI05G05180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G05180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKH7_CUCSA3.5e-5396.12Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152880 PE=4 SV=1[more]
BLAST of CSPI05G05180 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G05180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194896|gb|KGN50073.1|5.0e-5396.12hypothetical protein Csa_5G152880 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G05180.1CSPI05G05180.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G05180Csa5G152880Cucumber (Chinese Long) v2cpicuB240
CSPI05G05180CsaV3_5G002580Cucumber (Chinese Long) v3cpicucB285
CSPI05G05180CsGy5G002470Cucumber (Gy14) v2cgybcpiB226
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G05180Cucumber (Gy14) v2cgybcpiB128
CSPI05G05180Cucumber (Gy14) v2cgybcpiB284
CSPI05G05180Silver-seed gourdcarcpiB0961
CSPI05G05180Silver-seed gourdcarcpiB0977
CSPI05G05180Cucumber (Chinese Long) v3cpicucB264
CSPI05G05180Cucumber (Chinese Long) v3cpicucB307
CSPI05G05180Watermelon (97103) v2cpiwmbB349
CSPI05G05180Watermelon (97103) v2cpiwmbB400
CSPI05G05180Watermelon (97103) v2cpiwmbB408
CSPI05G05180Wax gourdcpiwgoB454
CSPI05G05180Wild cucumber (PI 183967)cpicpiB112
CSPI05G05180Wild cucumber (PI 183967)cpicpiB182
CSPI05G05180Cucumber (Gy14) v1cgycpiB197
CSPI05G05180Cucumber (Gy14) v1cgycpiB457
CSPI05G05180Cucurbita maxima (Rimu)cmacpiB303
CSPI05G05180Cucurbita maxima (Rimu)cmacpiB370
CSPI05G05180Cucurbita maxima (Rimu)cmacpiB614
CSPI05G05180Cucurbita moschata (Rifu)cmocpiB295
CSPI05G05180Cucurbita moschata (Rifu)cmocpiB606
CSPI05G05180Cucumber (Chinese Long) v2cpicuB223
CSPI05G05180Cucumber (Chinese Long) v2cpicuB257
CSPI05G05180Melon (DHL92) v3.5.1cpimeB348
CSPI05G05180Melon (DHL92) v3.5.1cpimeB380
CSPI05G05180Melon (DHL92) v3.5.1cpimeB402
CSPI05G05180Watermelon (Charleston Gray)cpiwcgB379
CSPI05G05180Watermelon (Charleston Gray)cpiwcgB411
CSPI05G05180Watermelon (Charleston Gray)cpiwcgB416
CSPI05G05180Watermelon (97103) v1cpiwmB407
CSPI05G05180Watermelon (97103) v1cpiwmB415
CSPI05G05180Watermelon (97103) v1cpiwmB416
CSPI05G05180Cucurbita pepo (Zucchini)cpecpiB176
CSPI05G05180Cucurbita pepo (Zucchini)cpecpiB738
CSPI05G05180Bottle gourd (USVL1VR-Ls)cpilsiB322
CSPI05G05180Bottle gourd (USVL1VR-Ls)cpilsiB333
CSPI05G05180Bottle gourd (USVL1VR-Ls)cpilsiB385
CSPI05G05180Melon (DHL92) v3.6.1cpimedB338
CSPI05G05180Melon (DHL92) v3.6.1cpimedB375
CSPI05G05180Melon (DHL92) v3.6.1cpimedB397