Csa5G068170 (gene) Cucumber (Chinese Long) v2

NameCsa5G068170
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionCalmodulin 4, putative; contains IPR011992 (EF-hand-like domain)
LocationChr5 : 2112989 .. 2113656 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCATAGAAACAAATATATAGTATTAACCAGATGTATATCTCAAATCTTCAAGTTTCCAAGGCCAAGTATGAAGCAAGTAAGTTGATGAAGAAACATGAAAATAATGACGAAGGTGTTCCACTTAAAGCTTTCAATGGCATTCCTCCAGCTTCAACTAAAATCAACAACAAGCAAGCAATGGCAACGGAAATTATCCTGAAACCTAGTAATCATCCTGTTGCACACTACCTTACATCAAATGCCTATATGATACCAAGTAAGCAATTGGGAGCTGGAAAAGCTCAAGTAACCACCACAAGTGTTCTTGATATAAAGGCTTCTAATATGCAATTTAGTCGAGAGCAAATAAAAGAAATTTTTCAGTATCATGATAGCGACAATGATGGTTTTCTCAACCTAAGGGAGGTAACCAAAGCTTTTGCTTTTCTAGGCACAATTCTTCCATTATACAAAGCCTACCATGGCATGGTATACGCTGATGCTAACAAAGATGGTCTTATTAGCAAGGATGAACTCGAAAAACTCGTTGATTATGCATATAAATTTTTCAACAAACGATGAATGTTCTTAGCTATTTTCACGTGCATTTTATGTGCTGAGGTAATATTTGAAAGTTGTAAAAGTATAAGTAAAATAAAGAATTCGTCTACCATTTTTATTTTACTT

mRNA sequence

ATGTATATCTCAAATCTTCAAGTTTCCAAGGCCAAGTATGAAGCAAGTAAGTTGATGAAGAAACATGAAAATAATGACGAAGGTGTTCCACTTAAAGCTTTCAATGGCATTCCTCCAGCTTCAACTAAAATCAACAACAAGCAAGCAATGGCAACGGAAATTATCCTGAAACCTAGTAATCATCCTGTTGCACACTACCTTACATCAAATGCCTATATGATACCAAGTAAGCAATTGGGAGCTGGAAAAGCTCAAGTAACCACCACAAGTGTTCTTGATATAAAGGCTTCTAATATGCAATTTAGTCGAGAGCAAATAAAAGAAATTTTTCAGTATCATGATAGCGACAATGATGGTTTTCTCAACCTAAGGGAGGTAACCAAAGCTTTTGCTTTTCTAGGCACAATTCTTCCATTATACAAAGCCTACCATGGCATGGTATACGCTGATGCTAACAAAGATGGTCTTATTAGCAAGGATGAACTCGAAAAACTCGTTGATTATGCATATAAATTTTTCAACAAACGATGA

Coding sequence (CDS)

ATGTATATCTCAAATCTTCAAGTTTCCAAGGCCAAGTATGAAGCAAGTAAGTTGATGAAGAAACATGAAAATAATGACGAAGGTGTTCCACTTAAAGCTTTCAATGGCATTCCTCCAGCTTCAACTAAAATCAACAACAAGCAAGCAATGGCAACGGAAATTATCCTGAAACCTAGTAATCATCCTGTTGCACACTACCTTACATCAAATGCCTATATGATACCAAGTAAGCAATTGGGAGCTGGAAAAGCTCAAGTAACCACCACAAGTGTTCTTGATATAAAGGCTTCTAATATGCAATTTAGTCGAGAGCAAATAAAAGAAATTTTTCAGTATCATGATAGCGACAATGATGGTTTTCTCAACCTAAGGGAGGTAACCAAAGCTTTTGCTTTTCTAGGCACAATTCTTCCATTATACAAAGCCTACCATGGCATGGTATACGCTGATGCTAACAAAGATGGTCTTATTAGCAAGGATGAACTCGAAAAACTCGTTGATTATGCATATAAATTTTTCAACAAACGATGA

Protein sequence

MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSNHPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR*
BLAST of Csa5G068170 vs. TrEMBL
Match: A0A0A0KIY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 2.4e-94
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1

Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
           MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN
Sbjct: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60

Query: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
           HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF
Sbjct: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120

Query: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 177
           LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR
Sbjct: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 176

BLAST of Csa5G068170 vs. TrEMBL
Match: A0A0A0KLF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.9e-52
Identity = 116/176 (65.91%), Postives = 134/176 (76.14%), Query Frame = 1

Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
           M+I  LQ+SKAKYEASKLMKK+E N EGV L AFN     ST+IN  + MAT+  LKP N
Sbjct: 28  MHIPQLQMSKAKYEASKLMKKYEQNGEGVILSAFNDNARGSTQINTNREMATKK-LKP-N 87

Query: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
             VAH L+SNA +  + Q+  GKAQV    V D KASNMQFSREQIKEIFQY+DSD DGF
Sbjct: 88  DDVAHKLSSNAQLKSNNQI-RGKAQVPIKRVYDTKASNMQFSREQIKEIFQYYDSDRDGF 147

Query: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 177
           LN+REVTKAFA LG+I P  KAYHGMVYAD NKDGLI +DEL+KL++YA KF  K+
Sbjct: 148 LNIREVTKAFALLGSIFPFNKAYHGMVYADTNKDGLIGEDELDKLINYANKFMKKK 200

BLAST of Csa5G068170 vs. TrEMBL
Match: A0A0A0KMQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.6e-44
Identity = 100/176 (56.82%), Postives = 134/176 (76.14%), Query Frame = 1

Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
           MYIS LQ S A YEAS L+K++E N + V +KAF+ +  +ST+I N++++    ILKPS+
Sbjct: 1   MYISKLQASMAMYEASMLIKQYEKNGDAVKVKAFDDVR-SSTQIGNRESVLK--ILKPSD 60

Query: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
             VAH L S A++ P+++ G GK + + T VLD K+SNM  SRE+IKEIFQYHD++NDGF
Sbjct: 61  G-VAHKLRSEAHIQPTQRTG-GKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGF 120

Query: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 177
           LN  E+TKAFAFLG++ P YKA +GMVYADAN+DGLIS+ EL+KL+DYA K   K+
Sbjct: 121 LNRMELTKAFAFLGSMFPFYKACYGMVYADANEDGLISEAELDKLIDYASKIIKKK 171

BLAST of Csa5G068170 vs. TrEMBL
Match: A0A0A0LRC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.1e-30
Identity = 80/180 (44.44%), Postives = 124/180 (68.89%), Query Frame = 1

Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGV----PLKAFNGIPPASTKINNKQAMATEIIL 60
           M +S+LQ + AK EA++L+KK++ N +GV     L++F      ST++NN + +++  + 
Sbjct: 1   MSVSHLQ-AWAKNEANELIKKYDRNGDGVLTKEELQSFLRDARGSTQLNNIRNVSSSTVP 60

Query: 61  KPSNHPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSD 120
           K +N  +A  ++SN  + P KQL   KAQ ++      K SN+  SREQIKEIF+YHDS+
Sbjct: 61  K-TNENLAQKVSSNTCITPKKQL-LDKAQGSS------KQSNVPLSREQIKEIFKYHDSN 120

Query: 121 NDGFLNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 177
            DGFL++RE+TKAF+ +G+I+P  KA + M YAD ++DGL+S+ EL+KL+DYA+K   K+
Sbjct: 121 KDGFLSIRELTKAFSSMGSIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

BLAST of Csa5G068170 vs. TrEMBL
Match: A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.8e-18
Identity = 45/80 (56.25%), Postives = 60/80 (75.00%), Query Frame = 1

Query: 97  SNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGL 156
           S   FSRE++KEIF+ HD D DG+L++ E+ KA  FLG  +P YKA++GM Y D N DGL
Sbjct: 7   SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 157 ISKDELEKLVDYAYKFFNKR 177
           IS+DEL+KL+DYA +F  +R
Sbjct: 67  ISEDELDKLIDYAERFQKRR 86

BLAST of Csa5G068170 vs. NCBI nr
Match: gi|700194513|gb|KGN49690.1| (hypothetical protein Csa_5G068170 [Cucumis sativus])

HSP 1 Score: 352.8 bits (904), Expect = 3.4e-94
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1

Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
           MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN
Sbjct: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60

Query: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
           HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF
Sbjct: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120

Query: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 177
           LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR
Sbjct: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 176

BLAST of Csa5G068170 vs. NCBI nr
Match: gi|700194512|gb|KGN49689.1| (hypothetical protein Csa_5G067670 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 4.2e-52
Identity = 116/176 (65.91%), Postives = 134/176 (76.14%), Query Frame = 1

Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
           M+I  LQ+SKAKYEASKLMKK+E N EGV L AFN     ST+IN  + MAT+  LKP N
Sbjct: 28  MHIPQLQMSKAKYEASKLMKKYEQNGEGVILSAFNDNARGSTQINTNREMATKK-LKP-N 87

Query: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
             VAH L+SNA +  + Q+  GKAQV    V D KASNMQFSREQIKEIFQY+DSD DGF
Sbjct: 88  DDVAHKLSSNAQLKSNNQI-RGKAQVPIKRVYDTKASNMQFSREQIKEIFQYYDSDRDGF 147

Query: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 177
           LN+REVTKAFA LG+I P  KAYHGMVYAD NKDGLI +DEL+KL++YA KF  K+
Sbjct: 148 LNIREVTKAFALLGSIFPFNKAYHGMVYADTNKDGLIGEDELDKLINYANKFMKKK 200

BLAST of Csa5G068170 vs. NCBI nr
Match: gi|700194510|gb|KGN49687.1| (hypothetical protein Csa_5G067410 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 9.4e-44
Identity = 100/176 (56.82%), Postives = 134/176 (76.14%), Query Frame = 1

Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
           MYIS LQ S A YEAS L+K++E N + V +KAF+ +  +ST+I N++++    ILKPS+
Sbjct: 1   MYISKLQASMAMYEASMLIKQYEKNGDAVKVKAFDDVR-SSTQIGNRESVLK--ILKPSD 60

Query: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
             VAH L S A++ P+++ G GK + + T VLD K+SNM  SRE+IKEIFQYHD++NDGF
Sbjct: 61  G-VAHKLRSEAHIQPTQRTG-GKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGF 120

Query: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 177
           LN  E+TKAFAFLG++ P YKA +GMVYADAN+DGLIS+ EL+KL+DYA K   K+
Sbjct: 121 LNRMELTKAFAFLGSMFPFYKACYGMVYADANEDGLISEAELDKLIDYASKIIKKK 171

BLAST of Csa5G068170 vs. NCBI nr
Match: gi|449470190|ref|XP_004152801.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 1.0e-29
Identity = 80/180 (44.44%), Postives = 124/180 (68.89%), Query Frame = 1

Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGV----PLKAFNGIPPASTKINNKQAMATEIIL 60
           M +S+LQ + AK EA++L+KK++ N +GV     L++F      ST++NN + +++  + 
Sbjct: 1   MSVSHLQ-AWAKNEANELIKKYDRNGDGVLTKEELQSFLRDARGSTQLNNIRNVSSSTVP 60

Query: 61  KPSNHPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSD 120
           K +N  +A  ++SN  + P KQL   KAQ ++      K SN+  SREQIKEIF+YHDS+
Sbjct: 61  K-TNENLAQKVSSNTCITPKKQL-LDKAQGSS------KQSNVPLSREQIKEIFKYHDSN 120

Query: 121 NDGFLNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 177
            DGFL++RE+TKAF+ +G+I+P  KA + M YAD ++DGL+S+ EL+KL+DYA+K   K+
Sbjct: 121 KDGFLSIRELTKAFSSMGSIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

BLAST of Csa5G068170 vs. NCBI nr
Match: gi|659089539|ref|XP_008445564.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 2.8e-27
Identity = 79/176 (44.89%), Postives = 114/176 (64.77%), Query Frame = 1

Query: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60
           M +S+LQ + AK EAS+L+KK++ N +GV  K          ++ N + +++  I K +N
Sbjct: 1   MSVSHLQ-AWAKIEASELIKKYDRNGDGVLTKEELQSFLHDARLKNIRFVSSSTIPK-TN 60

Query: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120
             +   ++SN  + P KQL   KAQ +      ++ SN+  SREQIKEIF+YHDS+ DGF
Sbjct: 61  ENLDQKVSSNTRIKPKKQL-LDKAQDS------LRQSNVPLSREQIKEIFKYHDSNKDGF 120

Query: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 177
           L++RE+TKAF  LG+I+P  KA H M YAD ++DGLIS+ EL KL+DYA K   K+
Sbjct: 121 LSIRELTKAFGSLGSIVPFAKARHAMAYADVDEDGLISEAELHKLIDYAEKIIKKK 167

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KIY4_CUCSA2.4e-94100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1[more]
A0A0A0KLF3_CUCSA2.9e-5265.91Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1[more]
A0A0A0KMQ1_CUCSA6.6e-4456.82Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1[more]
A0A0A0LRC8_CUCSA7.1e-3044.44Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1[more]
A0A0A0LKX1_CUCSA2.8e-1856.25Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700194513|gb|KGN49690.1|3.4e-94100.00hypothetical protein Csa_5G068170 [Cucumis sativus][more]
gi|700194512|gb|KGN49689.1|4.2e-5265.91hypothetical protein Csa_5G067670 [Cucumis sativus][more]
gi|700194510|gb|KGN49687.1|9.4e-4456.82hypothetical protein Csa_5G067410 [Cucumis sativus][more]
gi|449470190|ref|XP_004152801.1|1.0e-2944.44PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus][more]
gi|659089539|ref|XP_008445564.1|2.8e-2744.89PREDICTED: probable calcium-binding protein CML11 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G068170.1Csa5G068170.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13202EF-hand_5coord: 149..166
score: 1.
IPR002048EF-hand domainPFAMPF13405EF-hand_6coord: 106..133
score: 3.
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 101..136
score: 12.114coord: 150..172
score: 7
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 97..167
score: 1.8
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 97..165
score: 6.99
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 150..162
score: -coord: 114..126
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 97..169
score: 2.4
NoneNo IPR availablePANTHERPTHR10891:SF592CALCIUM-BINDING PROTEIN CML38-RELATEDcoord: 97..169
score: 2.4

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G068170CmoCh04G020320Cucurbita moschata (Rifu)cmocuB745
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G068170Cucurbita maxima (Rimu)cmacuB760
Csa5G068170Watermelon (Charleston Gray)cuwcgB363
Csa5G068170Watermelon (97103) v1cuwmB436
Csa5G068170Cucurbita pepo (Zucchini)cpecuB448
Csa5G068170Bottle gourd (USVL1VR-Ls)culsiB338
Csa5G068170Cucumber (Gy14) v2cgybcuB225
Csa5G068170Melon (DHL92) v3.6.1cumedB365