Csa5G044000 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G044000
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 1439763 .. 1440296 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGGGAAAAAGAGAAAAATAAGATGGACAAAGACAATGAAAAGAAAAAGGCATTGACGAAGAAGCAGATGTTGAAAAATAAAAATAAAGAGAAAGATGAGTATGAAGCCAAAAAGAAGCCTGTGCGACAAAAAAGAATAAGAAGAAAGGGTAAGGTAAGGAAATGGTGTGAAGTCCTTAAGTTGCTGCATGAAATGAGATTCTTCTTAGAGGATGCAACAGTCCCAACATTTATCACTACCTTATTTGGTGTGTTAAGATGACACAAGTTTTGTCAAGGGCATATTTTTCTTAGGATCGACATAGTCTATGATTTTTAAATCGAAAGCCTTCATATATGGAAAGATTATTTATTGATAGACGGGGAAGACGTTGACTTCAATGCAAGAGAAAGTAATAGGCTTTATGACCTGCACAATGATGTAAATGCTAAAGGAAATAGAAAGATAGTATACCCTACTACGACGAAGTTCAATGATGTGTTGATAGTGGTGGTAGAGCTTAGAACTGGATGGGATATAACTCCCTAA

mRNA sequence

ATGAGAAGGGAAAAAGAGAAAAATAAGATGGACAAAGACAATGAAAAGAAAAAGGCATTGACGAAGAAGCAGATGTTGAAAAATAAAAATAAAGAGAAAGATGAGTATGAAGCCAAAAAGAAGCCTGTGCGACAAAAAAGAATAAGAAGAAAGGGTAAGGTAAGGAAATGGTGTGAAGTCCTTAAGTTGCTGCATGAAATGAGATTCTTCTTAGAGGATGCAACAGTCCCAACATTTATCACTACCTTATTTGACGGGGAAGACGTTGACTTCAATGCAAGAGAAAGTAATAGGCTTTATGACCTGCACAATGATGTAAATGCTAAAGGAAATAGAAAGATAGTATACCCTACTACGACGAAGTTCAATGATGTGTTGATAGTGGTGGTAGAGCTTAGAACTGGATGGGATATAACTCCCTAA

Coding sequence (CDS)

ATGAGAAGGGAAAAAGAGAAAAATAAGATGGACAAAGACAATGAAAAGAAAAAGGCATTGACGAAGAAGCAGATGTTGAAAAATAAAAATAAAGAGAAAGATGAGTATGAAGCCAAAAAGAAGCCTGTGCGACAAAAAAGAATAAGAAGAAAGGGTAAGGTAAGGAAATGGTGTGAAGTCCTTAAGTTGCTGCATGAAATGAGATTCTTCTTAGAGGATGCAACAGTCCCAACATTTATCACTACCTTATTTGACGGGGAAGACGTTGACTTCAATGCAAGAGAAAGTAATAGGCTTTATGACCTGCACAATGATGTAAATGCTAAAGGAAATAGAAAGATAGTATACCCTACTACGACGAAGTTCAATGATGTGTTGATAGTGGTGGTAGAGCTTAGAACTGGATGGGATATAACTCCCTAA

Protein sequence

MRREKEKNKMDKDNEKKKALTKKQMLKNKNKEKDEYEAKKKPVRQKRIRRKGKVRKWCEVLKLLHEMRFFLEDATVPTFITTLFDGEDVDFNARESNRLYDLHNDVNAKGNRKIVYPTTTKFNDVLIVVVELRTGWDITP*

Homology

[Close]

BLAST of Csa5G044000 vs. TrEMBL
Match: A0A0A0KPJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G044000 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 9.8e-75
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1


Query: 1   MRREKEKNKMDKDNEKKKALTKKQMLKNKNKEKDEYEAKKKPVRQKRIRRKGKVRKWCEV 60
           MRREKEKNKMDKDNEKKKALTKKQMLKNKNKEKDEYEAKKKPVRQKRIRRKGKVRKWCEV
Sbjct: 1   MRREKEKNKMDKDNEKKKALTKKQMLKNKNKEKDEYEAKKKPVRQKRIRRKGKVRKWCEV 60

Query: 61  LKLLHEMRFFLEDATVPTFITTLFDGEDVDFNARESNRLYDLHNDVNAKGNRKIVYPTTT 120
           LKLLHEMRFFLEDATVPTFITTLFDGEDVDFNARESNRLYDLHNDVNAKGNRKIVYPTTT
Sbjct: 61  LKLLHEMRFFLEDATVPTFITTLFDGEDVDFNARESNRLYDLHNDVNAKGNRKIVYPTTT 120

Query: 121 KFNDVLIVVVELRTGWDITP 141
           KFNDVLIVVVELRTGWDITP
Sbjct: 121 KFNDVLIVVVELRTGWDITP 140

[Close]

BLAST of Csa5G044000 vs. NCBI nr
Match: gi|700194469|gb|KGN49646.1| (hypothetical protein Csa_5G044000 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 1.4e-74
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1


Query: 1   MRREKEKNKMDKDNEKKKALTKKQMLKNKNKEKDEYEAKKKPVRQKRIRRKGKVRKWCEV 60
           MRREKEKNKMDKDNEKKKALTKKQMLKNKNKEKDEYEAKKKPVRQKRIRRKGKVRKWCEV
Sbjct: 1   MRREKEKNKMDKDNEKKKALTKKQMLKNKNKEKDEYEAKKKPVRQKRIRRKGKVRKWCEV 60

Query: 61  LKLLHEMRFFLEDATVPTFITTLFDGEDVDFNARESNRLYDLHNDVNAKGNRKIVYPTTT 120
           LKLLHEMRFFLEDATVPTFITTLFDGEDVDFNARESNRLYDLHNDVNAKGNRKIVYPTTT
Sbjct: 61  LKLLHEMRFFLEDATVPTFITTLFDGEDVDFNARESNRLYDLHNDVNAKGNRKIVYPTTT 120

Query: 121 KFNDVLIVVVELRTGWDITP 141
           KFNDVLIVVVELRTGWDITP
Sbjct: 121 KFNDVLIVVVELRTGWDITP 140

The following BLAST results are available for this feature:

BLAST of Csa5G044000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPJ8_CUCSA	9.8e-75	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G044000 PE=4 SV=1	[more]

BLAST of Csa5G044000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194469\|gb\|KGN49646.1\|	1.4e-74	100.00	hypothetical protein Csa_5G044000 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G044000.1	Csa5G044000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 3..46 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G044000	CsGy5G011320	Cucumber (Gy14) v2	cgybcuB225

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G044000	Silver-seed gourd	carcuB0200
Csa5G044000	Melon (DHL92) v3.5.1	cumeB391
Csa5G044000	Cucurbita pepo (Zucchini)	cpecuB457