CsGy5G011320 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G011320
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr5 : 12154374 .. 12154907 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGGGAAAAAGAGAAAAAGAAGATGGACAAAGACAATGAAAAGAAAAAGGCATTGACGAAGAAGCAGATGTTGAAAAATAAAAATAAAGAGAAAGATGAGTATGAAGCCAAAAAGAAGCCTGTGCGACAAAAAAGAATAAGAAGAAAGGGTAAGGTAAGGAAATGGTGTGAAGTCCTTAAGTTGCTGCATGAAATGAGATTCTTCCTAGAGGATGCAACAGTCCCAACATTTATCATTACCTTATTTGGTGTGTTAAGATGGCACAAGTTTTGTCAAAAGCATATTTTTCTTAGGATCGACATAGTCTATGATTTTTAAACCGAAAGCCTTCATATATGGAAAGATTATTTATTGATAGAGGGGGAAGACGTTGACTTCAATGCAAGAGAAAGTTATAGGCTTTATGACCTGCACAATGATGCAAATGCTGAAGGAAATAGAAAGATAGTATACCCTACTACGACGAAGTTCAATGATGTGTTGATACTGGTGGTAGAGCTTAGAACTAGATGGGATATAACTCCCTAA

mRNA sequence

ATGAGAAGGGAAAAAGAGAAAAAGAAGATGGACAAAGACAATGAAAAGAAAAAGGCATTGACGAAGAAGCAGATGTTGAAAAATAAAAATAAAGAGAAAGATGAGTATGAAGCCAAAAAGAAGCCTGTGCGACAAAAAAGAATAAGAAGAAAGGGTAAGGTAAGGAAATGGTGTGAAGTCCTTAAGTTGCTGCATGAAATGAGATTCTTCCTAGAGGATGCAACAGTCCCAACATTTATCATTACCTTATTTGAGGGGGAAGACGTTGACTTCAATGCAAGAGAAAGTTATAGGCTTTATGACCTGCACAATGATGCAAATGCTGAAGGAAATAGAAAGATAGTATACCCTACTACGACGAAGTTCAATGATGTGTTGATACTGGTGGTAGAGCTTAGAACTAGATGGGATATAACTCCCTAA

Coding sequence (CDS)

ATGAGAAGGGAAAAAGAGAAAAAGAAGATGGACAAAGACAATGAAAAGAAAAAGGCATTGACGAAGAAGCAGATGTTGAAAAATAAAAATAAAGAGAAAGATGAGTATGAAGCCAAAAAGAAGCCTGTGCGACAAAAAAGAATAAGAAGAAAGGGTAAGGTAAGGAAATGGTGTGAAGTCCTTAAGTTGCTGCATGAAATGAGATTCTTCCTAGAGGATGCAACAGTCCCAACATTTATCATTACCTTATTTGAGGGGGAAGACGTTGACTTCAATGCAAGAGAAAGTTATAGGCTTTATGACCTGCACAATGATGCAAATGCTGAAGGAAATAGAAAGATAGTATACCCTACTACGACGAAGTTCAATGATGTGTTGATACTGGTGGTAGAGCTTAGAACTAGATGGGATATAACTCCCTAA

Protein sequence

MRREKEKKKMDKDNEKKKALTKKQMLKNKNKEKDEYEAKKKPVRQKRIRRKGKVRKWCEVLKLLHEMRFFLEDATVPTFIITLFEGEDVDFNARESYRLYDLHNDANAEGNRKIVYPTTTKFNDVLILVVELRTRWDITP

Homology

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BLAST of CsGy5G011320 vs. NCBI nr
Match: KGN49646.1 (hypothetical protein Csa_5G044000 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 1.8e-38
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 54  VRKWCEVLKLLHEMRFFLEDATVPTFIITLFEGEDVDFNARESYRLYDLHNDANAEGNRK 113
           VRKWCEVLKLLHEMRFFLEDATVPTFI TLF+GEDVDFNARES RLYDLHND NA+GNRK
Sbjct: 54  VRKWCEVLKLLHEMRFFLEDATVPTFITTLFDGEDVDFNARESNRLYDLHNDVNAKGNRK 113

Query: 114 IVYPTTTKFNDVLILVVELRTRWDITP 141
           IVYPTTTKFNDVLI+VVELRT WDITP
Sbjct: 114 IVYPTTTKFNDVLIVVVELRTGWDITP 140

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BLAST of CsGy5G011320 vs. TrEMBL
Match: tr|A0A0A0KPJ8|A0A0A0KPJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G044000 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.2e-38
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 54  VRKWCEVLKLLHEMRFFLEDATVPTFIITLFEGEDVDFNARESYRLYDLHNDANAEGNRK 113
           VRKWCEVLKLLHEMRFFLEDATVPTFI TLF+GEDVDFNARES RLYDLHND NA+GNRK
Sbjct: 54  VRKWCEVLKLLHEMRFFLEDATVPTFITTLFDGEDVDFNARESNRLYDLHNDVNAKGNRK 113

Query: 114 IVYPTTTKFNDVLILVVELRTRWDITP 141
           IVYPTTTKFNDVLI+VVELRT WDITP
Sbjct: 114 IVYPTTTKFNDVLIVVVELRTGWDITP 140

The following BLAST results are available for this feature:

BLAST of CsGy5G011320 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49646.1	1.8e-38	91.95	hypothetical protein Csa_5G044000 [Cucumis sativus]	[more]

BLAST of CsGy5G011320 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G011320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G011320 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KPJ8\|A0A0A0KPJ8_CUCSA	1.2e-38	91.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G044000 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G011320.1	CsGy5G011320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 3..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G011320	Csa5G044000	Cucumber (Chinese Long) v2	cgybcuB225
CsGy5G011320	CsaV3_5G014990	Cucumber (Chinese Long) v3	cgybcucB232

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G011320	Cucurbita maxima (Rimu)	cgybcmaB665
CsGy5G011320	Cucurbita moschata (Rifu)	cgybcmoB640
CsGy5G011320	Cucurbita pepo (Zucchini)	cgybcpeB638
CsGy5G011320	Bottle gourd (USVL1VR-Ls)	cgyblsiB339
CsGy5G011320	Melon (DHL92) v3.5.1	cgybmeB335
CsGy5G011320	Melon (DHL92) v3.6.1	cgybmedB323
CsGy5G011320	Melon (DHL92) v3.6.1	cgybmedB336
CsGy5G011320	Watermelon (Charleston Gray)	cgybwcgB373
CsGy5G011320	Wild cucumber (PI 183967)	cgybcpiB227