Csa5G002550 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G002550
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Short-chain dehydrogenase/reductase SDR; contains IPR002198 (Short-chain dehydrogenase/reductase SDR)
Location	Chr5 : 125861 .. 126131 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATATGGTTGTGTGTGGTGACAGTGAATAATGCAGGTTTGATCAATAGAAGTTGTAAAATATGGGAATTGGATGCACAAGAATTTGATAATGTGATTGATACCAACGTGAAAGGAATAGCAAATATAATGCGTCATTTCATTCCACTTATGATTTCTTCCAACAAAGGCATTATCATCAACATGTCTTCTATTGCTGGGAGAGATGCGCGTGAACTGGTATTCTTTATTATTATTTCAGATTAAACTGCTAAGACTTATACTTTGA

mRNA sequence

ATGATGATATGGTTGTGTGTGGTGACAGTGAATAATGCAGGTTTGATCAATAGAAGTTGTAAAATATGGGAATTGGATGCACAAGAATTTGATAATGTGATTGATACCAACGTGAAAGGAATAGCAAATATAATGCGTCATTTCATTCCACTTATGATTTCTTCCAACAAAGGCATTATCATCAACATGTCTTCTATTGCTGGGAGAGATGCGCGTGAACTGATTAAACTGCTAAGACTTATACTTTGA

Coding sequence (CDS)

ATGATGATATGGTTGTGTGTGGTGACAGTGAATAATGCAGGTTTGATCAATAGAAGTTGTAAAATATGGGAATTGGATGCACAAGAATTTGATAATGTGATTGATACCAACGTGAAAGGAATAGCAAATATAATGCGTCATTTCATTCCACTTATGATTTCTTCCAACAAAGGCATTATCATCAACATGTCTTCTATTGCTGGGAGAGATGCGCGTGAACTGATTAAACTGCTAAGACTTATACTTTGA

Protein sequence

MMIWLCVVTVNNAGLINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGIIINMSSIAGRDARELIKLLRLIL*

Homology

[Close]

BLAST of Csa5G002550 vs. Swiss-Prot
Match: PTALR_ARATH (NADPH-dependent pterin aldehyde reductase OS=Arabidopsis thaliana GN=At1g10310 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.1e-18
Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 1


Query: 8   VTVNNAGLINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGIIINMSSIA 67
           + VNNAG IN++ KIWE+ A++FDNV+DTNVKG+AN++RHFIPLM+   +GII+NMSS  
Sbjct: 96  IIVNNAGTINKNSKIWEVSAEDFDNVMDTNVKGVANVLRHFIPLMLPRKQGIIVNMSSGW 155

Query: 68  GRDARELI 76
           GR    L+
Sbjct: 156 GRSGAALV 163

[Close]

BLAST of Csa5G002550 vs. Swiss-Prot
Match: FABG_STAAS (3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain MSSA476) GN=fabG PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.7e-07
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 1


Query: 8   VTVNNAGLINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGIIINMSSIA 67
           V VNNAG I R   +  +  QE+D+VIDTN+KG+ N ++   P M+    G IIN+SS+ 
Sbjct: 85  VLVNNAG-ITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVV 144

Query: 68  G 69
           G
Sbjct: 145 G 144

[Close]

BLAST of Csa5G002550 vs. Swiss-Prot
Match: FABG_STAAW (3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain MW2) GN=fabG PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.7e-07
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 1


Query: 8   VTVNNAGLINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGIIINMSSIA 67
           V VNNAG I R   +  +  QE+D+VIDTN+KG+ N ++   P M+    G IIN+SS+ 
Sbjct: 85  VLVNNAG-ITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVV 144

Query: 68  G 69
           G
Sbjct: 145 G 144

[Close]

BLAST of Csa5G002550 vs. Swiss-Prot
Match: FABG_STAAR (3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain MRSA252) GN=fabG PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.7e-07
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 1


Query: 8   VTVNNAGLINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGIIINMSSIA 67
           V VNNAG I R   +  +  QE+D+VIDTN+KG+ N ++   P M+    G IIN+SS+ 
Sbjct: 85  VLVNNAG-ITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVV 144

Query: 68  G 69
           G
Sbjct: 145 G 144

[Close]

BLAST of Csa5G002550 vs. Swiss-Prot
Match: FABG_STAAN (3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain N315) GN=fabG PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.7e-07
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 1


Query: 8   VTVNNAGLINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGIIINMSSIA 67
           V VNNAG I R   +  +  QE+D+VIDTN+KG+ N ++   P M+    G IIN+SS+ 
Sbjct: 85  VLVNNAG-ITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVV 144

Query: 68  G 69
           G
Sbjct: 145 G 144

[Close]

BLAST of Csa5G002550 vs. TrEMBL
Match: A0A0A0KIM5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G002550 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 5.6e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MMIWLCVVTVNNAGLINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGII 60
          MMIWLCVVTVNNAGLINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGII
Sbjct: 1  MMIWLCVVTVNNAGLINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGII 60

Query: 61 INMSSIAGRDARELIKLLRLIL 83
          INMSSIAGRDARELIKLLRLIL
Sbjct: 61 INMSSIAGRDARELIKLLRLIL 82

[Close]

BLAST of Csa5G002550 vs. TrEMBL
Match: A0A0A0KMF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G002570 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.3e-21
Identity = 51/66 (77.27%), Postives = 58/66 (87.88%), Query Frame = 1


Query: 8   VTVNNAGLINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGIIINMSSIA 67
           + VNNAGL ++S KIWELDA+EFDNVIDTNVKGIANI+RHFIPLMI +N GII+NMSS A
Sbjct: 105 ILVNNAGLAHKSAKIWELDAEEFDNVIDTNVKGIANILRHFIPLMIQNNNGIIVNMSSGA 164

Query: 68  GRDARE 74
           GR A E
Sbjct: 165 GRSAHE 170

[Close]

BLAST of Csa5G002550 vs. TrEMBL
Match: R0IE56_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10011121mg PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-16
Identity = 41/68 (60.29%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 8   VTVNNAGLINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGIIINMSSIA 67
           + VNNAG IN++ KIWE+ A++FDNV+DTNVKG+AN++RHFIPLM+   +GII+NMSS  
Sbjct: 118 IIVNNAGTINKNSKIWEVSAEDFDNVMDTNVKGVANVLRHFIPLMLPRKQGIIVNMSSGW 177

Query: 68  GRDARELI 76
           GR    L+
Sbjct: 178 GRSGAALV 185

[Close]

BLAST of Csa5G002550 vs. TrEMBL
Match: D7KKP2_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_471142 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-16
Identity = 41/68 (60.29%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 8   VTVNNAGLINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGIIINMSSIA 67
           + VNNAG IN++ KIWE+ A++FDNV+DTNVKG+AN++RHFIPLM+   +GII+NMSS  
Sbjct: 94  IIVNNAGTINKNSKIWEVSAEDFDNVMDTNVKGVANVLRHFIPLMLPRKQGIIVNMSSGW 153

Query: 68  GRDARELI 76
           GR    L+
Sbjct: 154 GRSGAALV 161

[Close]

BLAST of Csa5G002550 vs. TrEMBL
Match: V4L7T6_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10008625mg PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-16
Identity = 41/68 (60.29%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 8   VTVNNAGLINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGIIINMSSIA 67
           + VNNAG IN++ KIWE+ A++FDNV+DTNVKG+AN++RHFIPLM+   +GII+NMSS  
Sbjct: 96  IIVNNAGTINKNSKIWEVSAEDFDNVMDTNVKGVANVLRHFIPLMLPRKQGIIVNMSSGW 155

Query: 68  GRDARELI 76
           GR    L+
Sbjct: 156 GRSGAALV 163

[Close]

BLAST of Csa5G002550 vs. TAIR10
Match: AT1G10310.1 (AT1G10310.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 93.6 bits (231), Expect = 6.2e-20
Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 1


Query: 8   VTVNNAGLINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGIIINMSSIA 67
           + VNNAG IN++ KIWE+ A++FDNV+DTNVKG+AN++RHFIPLM+   +GII+NMSS  
Sbjct: 96  IIVNNAGTINKNSKIWEVSAEDFDNVMDTNVKGVANVLRHFIPLMLPRKQGIIVNMSSGW 155

Query: 68  GRDARELI 76
           GR    L+
Sbjct: 156 GRSGAALV 163

[Close]

BLAST of Csa5G002550 vs. NCBI nr
Match: gi|700194383|gb|KGN49560.1| (hypothetical protein Csa_5G002550 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 8.1e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MMIWLCVVTVNNAGLINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGII 60
          MMIWLCVVTVNNAGLINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGII
Sbjct: 1  MMIWLCVVTVNNAGLINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGII 60

Query: 61 INMSSIAGRDARELIKLLRLIL 83
          INMSSIAGRDARELIKLLRLIL
Sbjct: 61 INMSSIAGRDARELIKLLRLIL 82

[Close]

BLAST of Csa5G002550 vs. NCBI nr
Match: gi|449462820|ref|XP_004149138.1| (PREDICTED: NADPH-dependent pterin aldehyde reductase-like [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-28
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 8   VTVNNAGLINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGIIINMSSIA 67
           + VNNAGLINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGIIINMSSIA
Sbjct: 98  IIVNNAGLINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGIIINMSSIA 157

Query: 68  GRDARELI 76
           GRDARELI
Sbjct: 158 GRDARELI 165

[Close]

BLAST of Csa5G002550 vs. NCBI nr
Match: gi|659129579|ref|XP_008464744.1| (PREDICTED: uncharacterized oxidoreductase YMR226C-like [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-24
Identity = 58/68 (85.29%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 8   VTVNNAGLINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGIIINMSSIA 67
           + VNNAGLINR+ K+WELDA EFDNVIDTNVKGIAN+MRHFIPLMISSNKGIIINMSS+A
Sbjct: 99  IIVNNAGLINRNGKMWELDAHEFDNVIDTNVKGIANVMRHFIPLMISSNKGIIINMSSMA 158

Query: 68  GRDARELI 76
           GRD+ ELI
Sbjct: 159 GRDSHELI 166

[Close]

BLAST of Csa5G002550 vs. NCBI nr
Match: gi|449462804|ref|XP_004149130.1| (PREDICTED: NADPH-dependent pterin aldehyde reductase-like [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 9.0e-21
Identity = 51/66 (77.27%), Postives = 58/66 (87.88%), Query Frame = 1


Query: 8   VTVNNAGLINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGIIINMSSIA 67
           + VNNAGL ++S KIWELDA+EFDNVIDTNVKGIANI+RHFIPLMI +N GII+NMSS A
Sbjct: 105 ILVNNAGLAHKSAKIWELDAEEFDNVIDTNVKGIANILRHFIPLMIQNNNGIIVNMSSGA 164

Query: 68  GRDARE 74
           GR A E
Sbjct: 165 GRSAHE 170

[Close]

BLAST of Csa5G002550 vs. NCBI nr
Match: gi|659129571|ref|XP_008464740.1| (PREDICTED: uncharacterized oxidoreductase YMR226C-like isoform X1 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-20
Identity = 50/66 (75.76%), Postives = 58/66 (87.88%), Query Frame = 1


Query: 8   VTVNNAGLINRSCKIWELDAQEFDNVIDTNVKGIANIMRHFIPLMISSNKGIIINMSSIA 67
           + VNNAGL +RS KIWEL+A+EFDNVIDTNVKGIANI+RHF+PLMI +N GII+NMSS A
Sbjct: 81  ILVNNAGLAHRSAKIWELEAEEFDNVIDTNVKGIANILRHFVPLMIQNNNGIIVNMSSGA 140

Query: 68  GRDARE 74
           GR A E
Sbjct: 141 GRSAHE 146

The following BLAST results are available for this feature:

BLAST of Csa5G002550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PTALR_ARATH	1.1e-18	60.29	NADPH-dependent pterin aldehyde reductase OS=Arabidopsis thaliana GN=At1g10310 P...	[more]
FABG_STAAS	5.7e-07	45.90	3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain...	[more]
FABG_STAAW	5.7e-07	45.90	3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain...	[more]
FABG_STAAR	5.7e-07	45.90	3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain...	[more]
FABG_STAAN	5.7e-07	45.90	3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain...	[more]

BLAST of Csa5G002550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIM5_CUCSA	5.6e-38	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G002550 PE=4 SV=1	[more]
A0A0A0KMF3_CUCSA	6.3e-21	77.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G002570 PE=3 SV=1	[more]
R0IE56_9BRAS	1.2e-16	60.29	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10011121mg PE=3 SV=1	[more]
D7KKP2_ARALL	1.2e-16	60.29	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
V4L7T6_EUTSA	1.2e-16	60.29	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10008625mg PE=3 SV=1	[more]

BLAST of Csa5G002550 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10310.1	6.2e-20	60.29	NAD(P)-binding Rossmann-fold superfamily protein	[more]

BLAST of Csa5G002550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194383\|gb\|KGN49560.1\|	8.1e-38	100.00	hypothetical protein Csa_5G002550 [Cucumis sativus]	[more]
gi\|449462820\|ref\|XP_004149138.1\|	1.2e-28	97.06	PREDICTED: NADPH-dependent pterin aldehyde reductase-like [Cucumis sativus]	[more]
gi\|659129579\|ref\|XP_008464744.1\|	1.3e-24	85.29	PREDICTED: uncharacterized oxidoreductase YMR226C-like [Cucumis melo]	[more]
gi\|449462804\|ref\|XP_004149130.1\|	9.0e-21	77.27	PREDICTED: NADPH-dependent pterin aldehyde reductase-like [Cucumis sativus]	[more]
gi\|659129571\|ref\|XP_008464740.1\|	1.5e-20	75.76	PREDICTED: uncharacterized oxidoreductase YMR226C-like isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002347	SDR_fam
IPR016040	NAD(P)-bd_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042335	cuticle development
biological_process	GO:0006760	folic acid-containing compound metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009409	response to cold
biological_process	GO:0000038	very long-chain fatty acid metabolic process
biological_process	GO:0042967	acyl-carrier-protein biosynthetic process
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0019752	carboxylic acid metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005835	fatty acid synthase complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
molecular_function	GO:0004316	3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G002550.1	Csa5G002550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002347	Short-chain dehydrogenase/reductase SDR	PANTHER	PTHR24322	FAMILY NOT NAMED	coord: 10..62 score: 2.3
IPR002347	Short-chain dehydrogenase/reductase SDR	PFAM	PF00106	adh_short	coord: 10..72 score: 6.1
IPR016040	NAD(P)-binding domain	GENE3D	G3DSA:3.40.50.720		coord: 8..71 score: 5.6
IPR016040	NAD(P)-binding domain	unknown	SSF51735	NAD(P)-binding Rossmann-fold domains	coord: 10..69 score: 2.3
None	No IPR available	PANTHER	PTHR24322:SF500	SUBFAMILY NOT NAMED	coord: 10..62 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G002550	Cla001891	Watermelon (97103) v1	cuwmB438
Csa5G002550	MELO3C026451	Melon (DHL92) v3.5.1	cumeB345
Csa5G002550	ClCG11G000220	Watermelon (Charleston Gray)	cuwcgB354
Csa5G002550	Lsi11G000730	Bottle gourd (USVL1VR-Ls)	culsiB340
Csa5G002550	MELO3C026450.2	Melon (DHL92) v3.6.1	cumedB368
Csa5G002550	Cla97C11G206530	Watermelon (97103) v2	cuwmbB360
Csa5G002550	Bhi07G000038	Wax gourd	cuwgoB520
Csa5G002550	CSPI05G00100	Wild cucumber (PI 183967)	cpicuB240
Csa5G002550	Cucsa.019320	Cucumber (Gy14) v1	cgycuB394
Csa5G002550	CmaCh04G019210	Cucurbita maxima (Rimu)	cmacuB739
Csa5G002550	CmoCh04G020410	Cucurbita moschata (Rifu)	cmocuB733
Csa5G002550	Cp4.1LG01g16940	Cucurbita pepo (Zucchini)	cpecuB449
Csa5G002550	CsGy5G010440	Cucumber (Gy14) v2	cgybcuB225

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G002550	Silver-seed gourd	carcuB0692