Csa4G652850 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G652850
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionAT-rich interactive domain-containing protein; contains IPR001606 (ARID/BRIGHT DNA-binding domain), IPR009071 (High mobility group (HMG) box domain)
LocationChr4 : 22833778 .. 22835551 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACCGCCGGCCAGAACCAAAACATGGAACGGTGGCCTCGATAAGCATTATCCACCCTCACTTGCTACACATGATGAAGTTATCTCCGACCCCATTGTTTTTTGGGACACTTTGCGCCGTTTCCATTTTATGATGAACACAAAGTTCATGTGAGTATTTTTGTTCTTTTCTAAAGCTTCATAATATGATATTAATGGCGGCTACATAACCAAAAGACACTATACTTTTACACTTTTACACTTTTTTCACTTCCTCTGTTTACTAATGGCTACTTTTCTCTTTACTCGTTGAATATTATAAAGGATTCCTGTGATTGGAGGGAAGGAACTAGACTTGCATGTTTTATATTCAGAAGTTACAAGAAGAGGAGGGCATGAAAAAGTAAGTTTCGGGGGTTGGGGTTTTGGTTTTAATGAAGCTTTTTGACTCTGTTTTTTTTGTTTAATGGCGGATTTAGGTTGTTGCAGAGAAGAAATGGAGAGAAGTTGGAAGTGTTTTTAAATTTTCTCCTACAACTACAAGTGCTTCATTTGTATTGAGAAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTATTTGTTCGGCCGGCAAGGCCCCATTTGTGTCCCTCAAGGTCCCTTTTTTTTTTCCCTCTTCTTTCATTTATCCATTCTTTTTTCCACATTGGATTTTTTGAAAATCTGATTTGGCTTTTGTCTTTCTACTACAGCACCATTTCCTTTTGGTAGCCCTACCAGTGAAAACGAATTGGCTCTAGTGGAATATACTCCCAAAACTACGTCGTTTTCCCCTGGTCCTCCTTCTGAAGGTGACAAACCCTCCCTTTTTTTTTTTCACTTCATTCACTTCTTTTAATTCCCCTTCGTGGGGTCAAGCAGTAAAAGCTCAACAGTTCTCCACCAATGCCTTGGCTTTTCTATATAACTGAACTTGTTCAACAAATTATTGCCACTCTGACCATTTTTTTTTTCTAAAAGAAAATTTCTCTTTTTGGGCTTATGTATATTACTTGTTTTTTTCAGTTACCGGAACAATTGATGGCAAATTCGACTGTGGTTATCTTGTAACTGTGAAATTGGGATCTGAGGTTTTAAGAGGAGTTCTTTACCATCCAGATCAGCCACCTCCCTCTGATCTCCGACCTCTATCTACCAACGCCATTGTACCGTATACCGGTGGGAGATATCGACATTCAGGTCGACGGCACCGGCGGAGCCGGAGAAAGGGAGACCCGAATCATCCAAAACCGAATAGAAGTGGGTACAATTTCTTCTTTGCTGAGAAGCATTATAAGCTTAAATCTCTGTATCCAAACAGAGAGAGGGAGTTCACTAAGATGATTGGAGAGTCTTGGAATAATCTTAGCCCTGAAGAAAGGATGGTATGTATGTGTTTCATCAATCATTCTTTTTTGTCTCTCTCTTTAGTTTAAAGAGTCATAAAGTGATTTTGTTGATTTAATTTGTGTTATAGGTTTATCAGAACATTGGGTTGAAAGATAAGGAAAGATACAGGAGAGAGTTGAAGGAGTATAAGGAGAAAATGAGGCTGGGAACAGAAGTTGATGGAGCTAACTATTCAAAACATGGAGACTAGTAGTAACACAAAGGAGGATGAAAATTCAGCAGTCTATTTTTAGGTTTTTTTTTTTGGGGATCTGCTAAATTTAATATGATATATAGATTTTGTATCATATCATATTTATATCCTCCTAACTTTACATGGCAAAACATAGGTTCTCTCATATCTATAGTGCTTGCCCAC

mRNA sequence

ATGTCACCGCCGGCCAGAACCAAAACATGGAACGGTGGCCTCGATAAGCATTATCCACCCTCACTTGCTACACATGATGAAGTTATCTCCGACCCCATTGTTTTTTGGGACACTTTGCGCCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAACTAGACTTGCATGTTTTATATTCAGAAGTTACAAGAAGAGGAGGGCATGAAAAAGTTGTTGCAGAGAAGAAATGGAGAGAAGTTGGAAGTGTTTTTAAATTTTCTCCTACAACTACAAGTGCTTCATTTGTATTGAGAAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTATTTGTTCGGCCGGCAAGGCCCCATTTGTGTCCCTCAAGCACCATTTCCTTTTGGTAGCCCTACCAGTGAAAACGAATTGGCTCTAGTGGAATATACTCCCAAAACTACGTCGTTTTCCCCTGGTCCTCCTTCTGAAGTTACCGGAACAATTGATGGCAAATTCGACTGTGGTTATCTTGTAACTGTGAAATTGGGATCTGAGGTTTTAAGAGGAGTTCTTTACCATCCAGATCAGCCACCTCCCTCTGATCTCCGACCTCTATCTACCAACGCCATTGTACCGTATACCGGTGGGAGATATCGACATTCAGGTCGACGGCACCGGCGGAGCCGGAGAAAGGGAGACCCGAATCATCCAAAACCGAATAGAAGTGGGTACAATTTCTTCTTTGCTGAGAAGCATTATAAGCTTAAATCTCTGTATCCAAACAGAGAGAGGGAGTTCACTAAGATGATTGGAGAGTCTTGGAATAATCTTAGCCCTGAAGAAAGGATGGTTTATCAGAACATTGGGTTGAAAGATAAGGAAAGATACAGGAGAGAGTTGAAGGAGTATAAGGAGAAAATGAGGCTGGGAACAGAAGTTGATGGAGCTAACTATTCAAAACATGGAGACTAG

Coding sequence (CDS)

ATGTCACCGCCGGCCAGAACCAAAACATGGAACGGTGGCCTCGATAAGCATTATCCACCCTCACTTGCTACACATGATGAAGTTATCTCCGACCCCATTGTTTTTTGGGACACTTTGCGCCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAACTAGACTTGCATGTTTTATATTCAGAAGTTACAAGAAGAGGAGGGCATGAAAAAGTTGTTGCAGAGAAGAAATGGAGAGAAGTTGGAAGTGTTTTTAAATTTTCTCCTACAACTACAAGTGCTTCATTTGTATTGAGAAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTATTTGTTCGGCCGGCAAGGCCCCATTTGTGTCCCTCAAGCACCATTTCCTTTTGGTAGCCCTACCAGTGAAAACGAATTGGCTCTAGTGGAATATACTCCCAAAACTACGTCGTTTTCCCCTGGTCCTCCTTCTGAAGTTACCGGAACAATTGATGGCAAATTCGACTGTGGTTATCTTGTAACTGTGAAATTGGGATCTGAGGTTTTAAGAGGAGTTCTTTACCATCCAGATCAGCCACCTCCCTCTGATCTCCGACCTCTATCTACCAACGCCATTGTACCGTATACCGGTGGGAGATATCGACATTCAGGTCGACGGCACCGGCGGAGCCGGAGAAAGGGAGACCCGAATCATCCAAAACCGAATAGAAGTGGGTACAATTTCTTCTTTGCTGAGAAGCATTATAAGCTTAAATCTCTGTATCCAAACAGAGAGAGGGAGTTCACTAAGATGATTGGAGAGTCTTGGAATAATCTTAGCCCTGAAGAAAGGATGGTTTATCAGAACATTGGGTTGAAAGATAAGGAAAGATACAGGAGAGAGTTGAAGGAGTATAAGGAGAAAATGAGGCTGGGAACAGAAGTTGATGGAGCTAACTATTCAAAACATGGAGACTAG

Protein sequence

MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEKMRLGTEVDGANYSKHGD*
Homology
[Close]
BLAST of Csa4G652850 vs. Swiss-Prot
Match: HMGB9_ARATH (High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9 PE=2 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 1.6e-113
Identity = 210/305 (68.85%), Postives = 241/305 (79.02%), Query Frame = 1 

Query: 16  KHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGH 75
           K YP  LA H+ V+ D  VFWDTLRRFH +M+TKFMIPVIGGKELDLHVLY EVTRRGG+
Sbjct: 25  KEYPEPLALHEVVVKDSSVFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYVEVTRRGGY 84

Query: 76  EKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFP 135
           EKVV EKKWREVG VF+FS TTTSASFVLRKHYL+LL+HYEQV+LF  +GP+  P A F 
Sbjct: 85  EKVVVEKKWREVGGVFRFSATTTSASFVLRKHYLNLLFHYEQVHLFTARGPLLHPIATF- 144

Query: 136 FGSPTSENELALVEYTPKTTSF-SPGPPSE------VTGTIDGKFDCGYLVTVKLGSEVL 195
             +P++  E+ALVEYTP +  + +  PPS+        GTI+GKFDCGYLV VKLGSE+L
Sbjct: 145 HANPSTSKEMALVEYTPPSIRYHNTHPPSQGSSSFTAIGTIEGKFDCGYLVKVKLGSEIL 204

Query: 196 RGVLYHPDQP-PPSDLRPLSTNAIVPY--TGGRYRHSGRRHRRSRRKGDPNHPKPNRSGY 255
            GVLYH  QP P S    +  NA+VPY  TG R R  G+R RRSRR+ DPN+PKPNRSGY
Sbjct: 205 NGVLYHSAQPGPSSSPTAVLNNAVVPYVETGRRRRRLGKR-RRSRRREDPNYPKPNRSGY 264

Query: 256 NFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYK 311
           NFFFAEKH KLKSLYPN+EREFTK+IGESW+NLS EERMVYQ+IGLKDKERY+REL EY+
Sbjct: 265 NFFFAEKHCKLKSLYPNKEREFTKLIGESWSNLSTEERMVYQDIGLKDKERYQRELNEYR 324

[Close]
BLAST of Csa4G652850 vs. Swiss-Prot
Match: HMG15_ARATH (High mobility group B protein 15 OS=Arabidopsis thaliana GN=HMGB15 PE=2 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 5.7e-71
Identity = 140/320 (43.75%), Postives = 198/320 (61.88%), Query Frame = 1 

Query: 23  ATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEK 82
           AT++ V++DP +F  +L R H ++ TKFM+P+IGG++LDLH L+ EVT RGG  K++ E+
Sbjct: 23  ATYEAVVADPRLFMTSLERLHSLLGTKFMVPIIGGRDLDLHKLFVEVTSRGGINKILNER 82

Query: 83  KWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFPFGSP--- 142
           +W+EV + F F PT T+AS+VLRK+Y SLL +YEQ+Y F   G I       P   P   
Sbjct: 83  RWKEVTATFVFPPTATNASYVLRKYYFSLLNNYEQIYFFRSNGQIPPDSMQSPSARPCFI 142

Query: 143 ----TSENELALVEYTPK----TTSFSPG--PPSEVTGTIDGKFDCGYLVTVKLGSEVLR 202
                   EL  + +TP+    T  F  G    S V G IDGKF+ GYLVTV +GSE L+
Sbjct: 143 QGAIRPSQELQALTFTPQPKINTAEFLGGSLAGSNVVGVIDGKFESGYLVTVTIGSEQLK 202

Query: 203 GVLYH-PDQPPPSDLRPLSTNAIVPYT-----------GGRYRHSGRRHRRSRRKGDPNH 262
           GVLY    Q   S   P  ++ ++P T           GG  +   RR +   ++ DP+H
Sbjct: 203 GVLYQLLPQNTVSYQTPQQSHGVLPNTLNISANPQGVAGGVTKRRRRRKKSEIKRRDPDH 262

Query: 263 PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERY 318
           PKPNRSGYNFFFAE+H +LK L+P ++R+ ++MIGE WN L+ +E+++YQ   ++DKERY
Sbjct: 263 PKPNRSGYNFFFAEQHARLKPLHPGKDRDISRMIGELWNKLNEDEKLIYQGKAMEDKERY 322

[Close]
BLAST of Csa4G652850 vs. Swiss-Prot
Match: HMG10_ARATH (High mobility group B protein 10 OS=Arabidopsis thaliana GN=HMGB10 PE=2 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 3.6e-57
Identity = 125/291 (42.96%), Postives = 168/291 (57.73%), Query Frame = 1 

Query: 23  ATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEK 82
           A +D+++ +  +FW+ LR F  + +    +P +GG  LDLH L+ EVT RGG E+VV ++
Sbjct: 34  AKYDDLVRNSALFWEKLRAFLGLTSKTLKVPTVGGNTLDLHRLFIEVTSRGGIERVVKDR 93

Query: 83  KWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFPFGSPTSE 142
           KW+EV   F F  T TSASFVLRK+YL  L+  E VY    + P+   Q+     +  + 
Sbjct: 94  KWKEVIGAFSFPTTITSASFVLRKYYLKFLFQLEHVYYL--EKPVSSLQS-----TDEAL 153

Query: 143 NELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPPPSD 202
             LA     P+     P    EV G IDGKFD GYLVT+KLGS+ L+GVLYH  Q P   
Sbjct: 154 KSLANESPNPEEGIDEPQVGYEVQGFIDGKFDSGYLVTMKLGSQELKGVLYHIPQTPSQS 213

Query: 203 LRPLSTNAIVPYTGGRYRHSGRRHRRSRRKG--DPNHPKPNRSGYNFFFAEKHYKLKSLY 262
            + + T + +       + S RRHR+  +    D   PK +RSGYNFFFAE++ +LK  Y
Sbjct: 214 QQTMETPSAI------VQSSQRRHRKKSKLAVVDTQKPKCHRSGYNFFFAEQYARLKPEY 273

Query: 263 PNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEKMRLG 312
             +ER  TK IG  W+NL+  E+ VYQ+ G+KD ERYR E+ EYK     G
Sbjct: 274 HGQERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLEYKSSHESG 311

[Close]
BLAST of Csa4G652850 vs. Swiss-Prot
Match: HMG11_ARATH (Putative high mobility group B protein 11 OS=Arabidopsis thaliana GN=HMGB11 PE=3 SV=2)

HSP 1 Score: 182.2 bits (461), Expect = 9.2e-45
Identity = 106/289 (36.68%), Postives = 155/289 (53.63%), Query Frame = 1 

Query: 25  HDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKW 84
           + +++ +P +FW+ LR FH   + KF IP++GGK LDLH L++EVT RGG EKV+ +++ 
Sbjct: 30  YQDIVRNPELFWEMLRDFHESSDKKFKIPIVGGKSLDLHRLFNEVTSRGGLEKVIKDRRC 89

Query: 85  REVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFPFGSPTSENE 144
           +EV   F F  T T+++FVLRK YL +L+ +E +Y F         QAP    S   E E
Sbjct: 90  KEVIDAFNFKTTITNSAFVLRKSYLKMLFEFEHLYYF---------QAPL---STFWEKE 149

Query: 145 LALVEYTPKTT-----SFSPGPPSEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPP 204
            AL     K+      S    P + +TG IDGKF+ GYL++ K+GSE L+G+LYH     
Sbjct: 150 KALKLLIEKSANRDKDSQELKPGTVITGIIDGKFESGYLISTKVGSEKLKGMLYH----- 209

Query: 205 PSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSL 264
                      I P T       G++  +S +      PK  R+GYNFF AE+  ++K+ 
Sbjct: 210 -----------ISPET-----KRGKKKAKSSQGDSHKPPKRQRTGYNFFVAEQSVRIKAE 269

Query: 265 YPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEKM 309
              ++    K  G  W NLS  +R VY     +D +RY+ E+ +Y+  M
Sbjct: 270 NAGQKVSSPKNFGNMWTNLSESDRKVYYEKSREDGKRYKMEILQYRSLM 285

[Close]
BLAST of Csa4G652850 vs. Swiss-Prot
Match: ARID2_HUMAN (AT-rich interactive domain-containing protein 2 OS=Homo sapiens GN=ARID2 PE=1 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 5.8e-15
Identity = 47/116 (40.52%), Postives = 66/116 (56.90%), Query Frame = 1 

Query: 33  IVFWDTLRRFHFMMNTKFM-IPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGSVF 92
           + F D LR+FH    + F  IP +GGKELDLH LY+ VT  GG  KV  + +W E+   F
Sbjct: 17  LAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWGEIVEEF 76

Query: 93  KFSPTTTSASFVLRKHYLSLLYHYEQVYLFGR---QGPICVPQAPFPFGS-PTSEN 144
            F  + ++A+F L+++YL  L  YE+V+ FG    + P   P+   P G+ P+S N
Sbjct: 77  NFPRSCSNAAFALKQYYLRYLEKYEKVHHFGEDDDEVPPGNPKPQLPIGAIPSSYN 132

[Close]
BLAST of Csa4G652850 vs. TrEMBL
Match: A0A0A0L181_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652850 PE=4 SV=1)

HSP 1 Score: 682.6 bits (1760), Expect = 2.4e-193
Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 1 

Query: 1   MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60
           MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL
Sbjct: 1   MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180
           FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT
Sbjct: 121 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180

Query: 181 VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP 240
           VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP
Sbjct: 181 VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP 240

Query: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300
           NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE
Sbjct: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300

Query: 301 LKEYKEKMRLGTEVDGANYSKHGD 325
           LKEYKEKMRLGTEVDGANYSKHGD
Sbjct: 301 LKEYKEKMRLGTEVDGANYSKHGD 324

[Close]
BLAST of Csa4G652850 vs. TrEMBL
Match: E5GCD0_CUCME (High mobility group family OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 672.2 bits (1733), Expect = 3.3e-190
Identity = 318/324 (98.15%), Postives = 322/324 (99.38%), Query Frame = 1 

Query: 1   MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60
           MSPPARTKTWNGGLDKHYPP LATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL
Sbjct: 1   MSPPARTKTWNGGLDKHYPPPLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180
           FGRQGPICVPQAPF FGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT
Sbjct: 121 FGRQGPICVPQAPFSFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180

Query: 181 VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP 240
           VKLGSEVLRGVLYHP+QPPPSDLRPLSTNAIVPYTGGR+RHSGRRHRRSRRKGDPNHPKP
Sbjct: 181 VKLGSEVLRGVLYHPEQPPPSDLRPLSTNAIVPYTGGRHRHSGRRHRRSRRKGDPNHPKP 240

Query: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300
           NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE
Sbjct: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300

Query: 301 LKEYKEKMRLGTEVDGANYSKHGD 325
           LKEYKEKMR+GT+VDGANYSKHGD
Sbjct: 301 LKEYKEKMRMGTDVDGANYSKHGD 324

[Close]
BLAST of Csa4G652850 vs. TrEMBL
Match: A0A061FL25_THECC (High mobility group family isoform 2 OS=Theobroma cacao GN=TCM_034318 PE=4 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 1.0e-127
Identity = 227/316 (71.84%), Postives = 257/316 (81.33%), Query Frame = 1 

Query: 2   SPPARTKTWNGGLDK-HYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 61
           S   +TK  NG ++K  YP  LA H+EV+ DPIVFWDTLRRFHF+M TKFMIPVIGGKEL
Sbjct: 9   SSAGKTKGRNGAVEKKEYPDPLAYHEEVVQDPIVFWDTLRRFHFIMGTKFMIPVIGGKEL 68

Query: 62  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 121
           DLHVLY E T+RGG+EKVVAEKKWREVGSVF+FSPTTTSASFVLRKHY SLLYHYEQV+ 
Sbjct: 69  DLHVLYVEATKRGGYEKVVAEKKWREVGSVFRFSPTTTSASFVLRKHYFSLLYHYEQVHF 128

Query: 122 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 181
           F  +GP+  P   FP   P+   ELALVEY+PK     P P  EV GTIDGKFDCGYL++
Sbjct: 129 FKMKGPLHTPAVAFPVNDPSCRPELALVEYSPKPIREFPDPLIEVFGTIDGKFDCGYLIS 188

Query: 182 VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTG-GRYRHSGRRHRRSRRKGDPNHPK 241
           V+LGSEVL GVLYHP+QP  S   P   NA+VPY    + RHS RR RRSRR GDP++PK
Sbjct: 189 VRLGSEVLSGVLYHPEQPGSSASTPEYNNALVPYKRIHKSRHSVRRRRRSRRAGDPSYPK 248

Query: 242 PNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRR 301
           PNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWN+L PEERMVYQNIGLKDKERY+R
Sbjct: 249 PNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNSLGPEERMVYQNIGLKDKERYKR 308

Query: 302 ELKEYKEKMRLGTEVD 316
           ELKEYKE++++  +V+
Sbjct: 309 ELKEYKERLKIRQDVE 324

[Close]
BLAST of Csa4G652850 vs. TrEMBL
Match: A0A061FE61_THECC (High mobility group family isoform 1 OS=Theobroma cacao GN=TCM_034318 PE=4 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 9.7e-126
Identity = 227/322 (70.50%), Postives = 257/322 (79.81%), Query Frame = 1 

Query: 2   SPPARTKTWNGGLDK-HYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 61
           S   +TK  NG ++K  YP  LA H+EV+ DPIVFWDTLRRFHF+M TKFMIPVIGGKEL
Sbjct: 9   SSAGKTKGRNGAVEKKEYPDPLAYHEEVVQDPIVFWDTLRRFHFIMGTKFMIPVIGGKEL 68

Query: 62  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 121
           DLHVLY E T+RGG+EKVVAEKKWREVGSVF+FSPTTTSASFVLRKHY SLLYHYEQV+ 
Sbjct: 69  DLHVLYVEATKRGGYEKVVAEKKWREVGSVFRFSPTTTSASFVLRKHYFSLLYHYEQVHF 128

Query: 122 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSE------VTGTIDGKFD 181
           F  +GP+  P   FP   P+   ELALVEY+PK     P P  E      V GTIDGKFD
Sbjct: 129 FKMKGPLHTPAVAFPVNDPSCRPELALVEYSPKPIREFPDPLIEGTSCFSVFGTIDGKFD 188

Query: 182 CGYLVTVKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTG-GRYRHSGRRHRRSRRKG 241
           CGYL++V+LGSEVL GVLYHP+QP  S   P   NA+VPY    + RHS RR RRSRR G
Sbjct: 189 CGYLISVRLGSEVLSGVLYHPEQPGSSASTPEYNNALVPYKRIHKSRHSVRRRRRSRRAG 248

Query: 242 DPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKD 301
           DP++PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWN+L PEERMVYQNIGLKD
Sbjct: 249 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNSLGPEERMVYQNIGLKD 308

Query: 302 KERYRRELKEYKEKMRLGTEVD 316
           KERY+RELKEYKE++++  +V+
Sbjct: 309 KERYKRELKEYKERLKIRQDVE 330

[Close]
BLAST of Csa4G652850 vs. TrEMBL
Match: A0A0B0NYJ2_GOSAR (High mobility group B 9-like protein OS=Gossypium arboreum GN=F383_02064 PE=4 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 1.5e-123
Identity = 231/328 (70.43%), Postives = 259/328 (78.96%), Query Frame = 1 

Query: 3   PPARTKTWNGGLDK-HYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELD 62
           P  + K  NG ++K  YP SL +H+EV+ DPIVFWDTLRRFHF+M TKFMIPVIGGKELD
Sbjct: 10  PSVKAKGRNGVVEKKEYPDSLTSHEEVVKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELD 69

Query: 63  LHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLF 122
           LHVLY E T+RGG+EKVV+EKKWREVGSVFKFSPTTTSASFVLRKHY SLLYHYEQV+ F
Sbjct: 70  LHVLYVEATKRGGYEKVVSEKKWREVGSVFKFSPTTTSASFVLRKHYFSLLYHYEQVHFF 129

Query: 123 GRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSE------VTGTIDGKFDC 182
             +GP+  P    P   P+   ELALVEY+P+ T  SP P  E      VTGTI+GKFDC
Sbjct: 130 KMKGPLNTPTVASPVNDPSCRPELALVEYSPQPTRESPDPLIEGTSCFSVTGTIEGKFDC 189

Query: 183 GYLVTVKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGR-YRHSGRRHRRSRRKGD 242
           GYL++V+LGSEVL GVLYHP  P         +NAIVPY   R  RHS  R RRSRR GD
Sbjct: 190 GYLISVRLGSEVLSGVLYHPQHPVSE-----YSNAIVPYKQVRSARHS--RRRRSRRAGD 249

Query: 243 PNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDK 302
           P++PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWN+LSPEERMVYQNIGLKDK
Sbjct: 250 PSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNSLSPEERMVYQNIGLKDK 309

Query: 303 ERYRRELKEYKEKMRL---GTEVDGANY 320
           ERYRRELKEYKE+++L   G EVD  +Y
Sbjct: 310 ERYRRELKEYKERLKLRQEGGEVDKPHY 330

[Close]
BLAST of Csa4G652850 vs. TAIR10
Match: AT1G76110.1 (AT1G76110.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain)

HSP 1 Score: 410.6 bits (1054), Expect = 9.0e-115
Identity = 210/305 (68.85%), Postives = 241/305 (79.02%), Query Frame = 1 

Query: 16  KHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGH 75
           K YP  LA H+ V+ D  VFWDTLRRFH +M+TKFMIPVIGGKELDLHVLY EVTRRGG+
Sbjct: 25  KEYPEPLALHEVVVKDSSVFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYVEVTRRGGY 84

Query: 76  EKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFP 135
           EKVV EKKWREVG VF+FS TTTSASFVLRKHYL+LL+HYEQV+LF  +GP+  P A F 
Sbjct: 85  EKVVVEKKWREVGGVFRFSATTTSASFVLRKHYLNLLFHYEQVHLFTARGPLLHPIATF- 144

Query: 136 FGSPTSENELALVEYTPKTTSF-SPGPPSE------VTGTIDGKFDCGYLVTVKLGSEVL 195
             +P++  E+ALVEYTP +  + +  PPS+        GTI+GKFDCGYLV VKLGSE+L
Sbjct: 145 HANPSTSKEMALVEYTPPSIRYHNTHPPSQGSSSFTAIGTIEGKFDCGYLVKVKLGSEIL 204

Query: 196 RGVLYHPDQP-PPSDLRPLSTNAIVPY--TGGRYRHSGRRHRRSRRKGDPNHPKPNRSGY 255
            GVLYH  QP P S    +  NA+VPY  TG R R  G+R RRSRR+ DPN+PKPNRSGY
Sbjct: 205 NGVLYHSAQPGPSSSPTAVLNNAVVPYVETGRRRRRLGKR-RRSRRREDPNYPKPNRSGY 264

Query: 256 NFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYK 311
           NFFFAEKH KLKSLYPN+EREFTK+IGESW+NLS EERMVYQ+IGLKDKERY+REL EY+
Sbjct: 265 NFFFAEKHCKLKSLYPNKEREFTKLIGESWSNLSTEERMVYQDIGLKDKERYQRELNEYR 324

[Close]
BLAST of Csa4G652850 vs. TAIR10
Match: AT1G04880.1 (AT1G04880.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain)

HSP 1 Score: 269.2 bits (687), Expect = 3.2e-72
Identity = 140/320 (43.75%), Postives = 198/320 (61.88%), Query Frame = 1 

Query: 23  ATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEK 82
           AT++ V++DP +F  +L R H ++ TKFM+P+IGG++LDLH L+ EVT RGG  K++ E+
Sbjct: 23  ATYEAVVADPRLFMTSLERLHSLLGTKFMVPIIGGRDLDLHKLFVEVTSRGGINKILNER 82

Query: 83  KWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFPFGSP--- 142
           +W+EV + F F PT T+AS+VLRK+Y SLL +YEQ+Y F   G I       P   P   
Sbjct: 83  RWKEVTATFVFPPTATNASYVLRKYYFSLLNNYEQIYFFRSNGQIPPDSMQSPSARPCFI 142

Query: 143 ----TSENELALVEYTPK----TTSFSPG--PPSEVTGTIDGKFDCGYLVTVKLGSEVLR 202
                   EL  + +TP+    T  F  G    S V G IDGKF+ GYLVTV +GSE L+
Sbjct: 143 QGAIRPSQELQALTFTPQPKINTAEFLGGSLAGSNVVGVIDGKFESGYLVTVTIGSEQLK 202

Query: 203 GVLYH-PDQPPPSDLRPLSTNAIVPYT-----------GGRYRHSGRRHRRSRRKGDPNH 262
           GVLY    Q   S   P  ++ ++P T           GG  +   RR +   ++ DP+H
Sbjct: 203 GVLYQLLPQNTVSYQTPQQSHGVLPNTLNISANPQGVAGGVTKRRRRRKKSEIKRRDPDH 262

Query: 263 PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERY 318
           PKPNRSGYNFFFAE+H +LK L+P ++R+ ++MIGE WN L+ +E+++YQ   ++DKERY
Sbjct: 263 PKPNRSGYNFFFAEQHARLKPLHPGKDRDISRMIGELWNKLNEDEKLIYQGKAMEDKERY 322

[Close]
BLAST of Csa4G652850 vs. TAIR10
Match: AT3G13350.1 (AT3G13350.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain)

HSP 1 Score: 223.4 bits (568), Expect = 2.0e-58
Identity = 125/291 (42.96%), Postives = 168/291 (57.73%), Query Frame = 1 

Query: 23  ATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEK 82
           A +D+++ +  +FW+ LR F  + +    +P +GG  LDLH L+ EVT RGG E+VV ++
Sbjct: 34  AKYDDLVRNSALFWEKLRAFLGLTSKTLKVPTVGGNTLDLHRLFIEVTSRGGIERVVKDR 93

Query: 83  KWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFPFGSPTSE 142
           KW+EV   F F  T TSASFVLRK+YL  L+  E VY    + P+   Q+     +  + 
Sbjct: 94  KWKEVIGAFSFPTTITSASFVLRKYYLKFLFQLEHVYYL--EKPVSSLQS-----TDEAL 153

Query: 143 NELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPPPSD 202
             LA     P+     P    EV G IDGKFD GYLVT+KLGS+ L+GVLYH  Q P   
Sbjct: 154 KSLANESPNPEEGIDEPQVGYEVQGFIDGKFDSGYLVTMKLGSQELKGVLYHIPQTPSQS 213

Query: 203 LRPLSTNAIVPYTGGRYRHSGRRHRRSRRKG--DPNHPKPNRSGYNFFFAEKHYKLKSLY 262
            + + T + +       + S RRHR+  +    D   PK +RSGYNFFFAE++ +LK  Y
Sbjct: 214 QQTMETPSAI------VQSSQRRHRKKSKLAVVDTQKPKCHRSGYNFFFAEQYARLKPEY 273

Query: 263 PNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEKMRLG 312
             +ER  TK IG  W+NL+  E+ VYQ+ G+KD ERYR E+ EYK     G
Sbjct: 274 HGQERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLEYKSSHESG 311

[Close]
BLAST of Csa4G652850 vs. TAIR10
Match: AT1G55650.1 (AT1G55650.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain)

HSP 1 Score: 182.2 bits (461), Expect = 5.2e-46
Identity = 106/289 (36.68%), Postives = 155/289 (53.63%), Query Frame = 1 

Query: 25  HDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKW 84
           + +++ +P +FW+ LR FH   + KF IP++GGK LDLH L++EVT RGG EKV+ +++ 
Sbjct: 30  YQDIVRNPELFWEMLRDFHESSDKKFKIPIVGGKSLDLHRLFNEVTSRGGLEKVIKDRRC 89

Query: 85  REVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFPFGSPTSENE 144
           +EV   F F  T T+++FVLRK YL +L+ +E +Y F         QAP    S   E E
Sbjct: 90  KEVIDAFNFKTTITNSAFVLRKSYLKMLFEFEHLYYF---------QAPL---STFWEKE 149

Query: 145 LALVEYTPKTT-----SFSPGPPSEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPP 204
            AL     K+      S    P + +TG IDGKF+ GYL++ K+GSE L+G+LYH     
Sbjct: 150 KALKLLIEKSANRDKDSQELKPGTVITGIIDGKFESGYLISTKVGSEKLKGMLYH----- 209

Query: 205 PSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSL 264
                      I P T       G++  +S +      PK  R+GYNFF AE+  ++K+ 
Sbjct: 210 -----------ISPET-----KRGKKKAKSSQGDSHKPPKRQRTGYNFFVAEQSVRIKAE 269

Query: 265 YPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEKM 309
              ++    K  G  W NLS  +R VY     +D +RY+ E+ +Y+  M
Sbjct: 270 NAGQKVSSPKNFGNMWTNLSESDRKVYYEKSREDGKRYKMEILQYRSLM 285

[Close]
BLAST of Csa4G652850 vs. TAIR10
Match: AT4G11080.1 (AT4G11080.1 HMG (high mobility group) box protein)

HSP 1 Score: 48.5 bits (114), Expect = 8.9e-06
Identity = 28/80 (35.00%), Postives = 41/80 (51.25%), Query Frame = 1 

Query: 227 RRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNRER-EFTKMIGESWNNLSPEERMV 286
           +++++  DP  PK   S Y  +  E+   LK    N+   E  KM GE W NLS E++  
Sbjct: 235 KKAKKIKDPLKPKQPISAYLIYANERRAALKG--ENKSVIEVAKMAGEEWKNLSEEKKAP 294

Query: 287 YQNIGLKDKERYRRELKEYK 306
           Y  +  K+KE Y +E++ YK
Sbjct: 295 YDQMAKKNKEIYLQEMEGYK 312

[Close]
BLAST of Csa4G652850 vs. NCBI nr
Match: gi|449455571|ref|XP_004145526.1| (PREDICTED: high mobility group B protein 9 [Cucumis sativus])

HSP 1 Score: 682.6 bits (1760), Expect = 3.5e-193
Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 1 

Query: 1   MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60
           MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL
Sbjct: 1   MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180
           FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT
Sbjct: 121 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180

Query: 181 VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP 240
           VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP
Sbjct: 181 VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP 240

Query: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300
           NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE
Sbjct: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300

Query: 301 LKEYKEKMRLGTEVDGANYSKHGD 325
           LKEYKEKMRLGTEVDGANYSKHGD
Sbjct: 301 LKEYKEKMRLGTEVDGANYSKHGD 324

[Close]
BLAST of Csa4G652850 vs. NCBI nr
Match: gi|659104349|ref|XP_008452910.1| (PREDICTED: high mobility group B protein 9 [Cucumis melo])

HSP 1 Score: 672.2 bits (1733), Expect = 4.7e-190
Identity = 318/324 (98.15%), Postives = 322/324 (99.38%), Query Frame = 1 

Query: 1   MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60
           MSPPARTKTWNGGLDKHYPP LATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL
Sbjct: 1   MSPPARTKTWNGGLDKHYPPPLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180
           FGRQGPICVPQAPF FGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT
Sbjct: 121 FGRQGPICVPQAPFSFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180

Query: 181 VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP 240
           VKLGSEVLRGVLYHP+QPPPSDLRPLSTNAIVPYTGGR+RHSGRRHRRSRRKGDPNHPKP
Sbjct: 181 VKLGSEVLRGVLYHPEQPPPSDLRPLSTNAIVPYTGGRHRHSGRRHRRSRRKGDPNHPKP 240

Query: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300
           NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE
Sbjct: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300

Query: 301 LKEYKEKMRLGTEVDGANYSKHGD 325
           LKEYKEKMR+GT+VDGANYSKHGD
Sbjct: 301 LKEYKEKMRMGTDVDGANYSKHGD 324

[Close]
BLAST of Csa4G652850 vs. NCBI nr
Match: gi|590594732|ref|XP_007017934.1| (High mobility group family isoform 2 [Theobroma cacao])

HSP 1 Score: 464.5 bits (1194), Expect = 1.5e-127
Identity = 227/316 (71.84%), Postives = 257/316 (81.33%), Query Frame = 1 

Query: 2   SPPARTKTWNGGLDK-HYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 61
           S   +TK  NG ++K  YP  LA H+EV+ DPIVFWDTLRRFHF+M TKFMIPVIGGKEL
Sbjct: 9   SSAGKTKGRNGAVEKKEYPDPLAYHEEVVQDPIVFWDTLRRFHFIMGTKFMIPVIGGKEL 68

Query: 62  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 121
           DLHVLY E T+RGG+EKVVAEKKWREVGSVF+FSPTTTSASFVLRKHY SLLYHYEQV+ 
Sbjct: 69  DLHVLYVEATKRGGYEKVVAEKKWREVGSVFRFSPTTTSASFVLRKHYFSLLYHYEQVHF 128

Query: 122 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 181
           F  +GP+  P   FP   P+   ELALVEY+PK     P P  EV GTIDGKFDCGYL++
Sbjct: 129 FKMKGPLHTPAVAFPVNDPSCRPELALVEYSPKPIREFPDPLIEVFGTIDGKFDCGYLIS 188

Query: 182 VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTG-GRYRHSGRRHRRSRRKGDPNHPK 241
           V+LGSEVL GVLYHP+QP  S   P   NA+VPY    + RHS RR RRSRR GDP++PK
Sbjct: 189 VRLGSEVLSGVLYHPEQPGSSASTPEYNNALVPYKRIHKSRHSVRRRRRSRRAGDPSYPK 248

Query: 242 PNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRR 301
           PNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWN+L PEERMVYQNIGLKDKERY+R
Sbjct: 249 PNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNSLGPEERMVYQNIGLKDKERYKR 308

Query: 302 ELKEYKEKMRLGTEVD 316
           ELKEYKE++++  +V+
Sbjct: 309 ELKEYKERLKIRQDVE 324

[Close]
BLAST of Csa4G652850 vs. NCBI nr
Match: gi|1009108951|ref|XP_015887521.1| (PREDICTED: high mobility group B protein 9 [Ziziphus jujuba])

HSP 1 Score: 460.7 bits (1184), Expect = 2.1e-126
Identity = 231/321 (71.96%), Postives = 257/321 (80.06%), Query Frame = 1 

Query: 1   MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60
           MS   R   WNG    HYP  LA+H++V+ DPIVFWDTLRRFHF+MNTKFMIPVIGGKEL
Sbjct: 1   MSAEGRNTGWNGVQGVHYPAPLASHEDVVKDPIVFWDTLRRFHFLMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLH+LY EVTRRGG EKVVAEKKWREVG++F FSPTTTSASFVLRKHY  LLYHYEQVY 
Sbjct: 61  DLHILYVEVTRRGGFEKVVAEKKWREVGTIFMFSPTTTSASFVLRKHYSCLLYHYEQVYF 120

Query: 121 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180
           F  QGP C P    P  S   + ELA+V+Y+ K     P P  E  GTIDGKF+CGYLV+
Sbjct: 121 FKIQGPPCTPTVASPVSS--FKPELAIVQYSSKAIKDCPDPLIEGIGTIDGKFECGYLVS 180

Query: 181 VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP 240
           VKLGSE+L GVLYHP+QP  S   P S+NA+VPYT G+ RH   R RRSRR+GDPN+PKP
Sbjct: 181 VKLGSEILSGVLYHPEQPGTSIPIPQSSNALVPYT-GKPRHV--RRRRSRRRGDPNYPKP 240

Query: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300
           NRSGYNFFFAEKHYKLKSL+PNREREFTKMIGESW+NLSPEERMVYQNIGLKDKERY+RE
Sbjct: 241 NRSGYNFFFAEKHYKLKSLFPNREREFTKMIGESWSNLSPEERMVYQNIGLKDKERYKRE 300

Query: 301 LKEYKEKM--RLGTEVDGANY 320
           LKEYKE+M  R   EV+ A Y
Sbjct: 301 LKEYKERMKVRQTVEVNRAGY 316

[Close]
BLAST of Csa4G652850 vs. NCBI nr
Match: gi|590594728|ref|XP_007017933.1| (High mobility group family isoform 1 [Theobroma cacao])

HSP 1 Score: 458.0 bits (1177), Expect = 1.4e-125
Identity = 227/322 (70.50%), Postives = 257/322 (79.81%), Query Frame = 1 

Query: 2   SPPARTKTWNGGLDK-HYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 61
           S   +TK  NG ++K  YP  LA H+EV+ DPIVFWDTLRRFHF+M TKFMIPVIGGKEL
Sbjct: 9   SSAGKTKGRNGAVEKKEYPDPLAYHEEVVQDPIVFWDTLRRFHFIMGTKFMIPVIGGKEL 68

Query: 62  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 121
           DLHVLY E T+RGG+EKVVAEKKWREVGSVF+FSPTTTSASFVLRKHY SLLYHYEQV+ 
Sbjct: 69  DLHVLYVEATKRGGYEKVVAEKKWREVGSVFRFSPTTTSASFVLRKHYFSLLYHYEQVHF 128

Query: 122 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSE------VTGTIDGKFD 181
           F  +GP+  P   FP   P+   ELALVEY+PK     P P  E      V GTIDGKFD
Sbjct: 129 FKMKGPLHTPAVAFPVNDPSCRPELALVEYSPKPIREFPDPLIEGTSCFSVFGTIDGKFD 188

Query: 182 CGYLVTVKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTG-GRYRHSGRRHRRSRRKG 241
           CGYL++V+LGSEVL GVLYHP+QP  S   P   NA+VPY    + RHS RR RRSRR G
Sbjct: 189 CGYLISVRLGSEVLSGVLYHPEQPGSSASTPEYNNALVPYKRIHKSRHSVRRRRRSRRAG 248

Query: 242 DPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKD 301
           DP++PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWN+L PEERMVYQNIGLKD
Sbjct: 249 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNSLGPEERMVYQNIGLKD 308

Query: 302 KERYRRELKEYKEKMRLGTEVD 316
           KERY+RELKEYKE++++  +V+
Sbjct: 309 KERYKRELKEYKERLKIRQDVE 330

The following BLAST results are available for this feature:
BLAST of Csa4G652850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
HMGB9_ARATH1.6e-11368.85High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9 PE=2 SV=1[more]
HMG15_ARATH5.7e-7143.75High mobility group B protein 15 OS=Arabidopsis thaliana GN=HMGB15 PE=2 SV=1[more]
HMG10_ARATH3.6e-5742.96High mobility group B protein 10 OS=Arabidopsis thaliana GN=HMGB10 PE=2 SV=1[more]
HMG11_ARATH9.2e-4536.68Putative high mobility group B protein 11 OS=Arabidopsis thaliana GN=HMGB11 PE=3... [more]
ARID2_HUMAN5.8e-1540.52AT-rich interactive domain-containing protein 2 OS=Homo sapiens GN=ARID2 PE=1 SV... [more]
BLAST of Csa4G652850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L181_CUCSA2.4e-193100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652850 PE=4 SV=1[more]
E5GCD0_CUCME3.3e-19098.15High mobility group family OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A061FL25_THECC1.0e-12771.84High mobility group family isoform 2 OS=Theobroma cacao GN=TCM_034318 PE=4 SV=1[more]
A0A061FE61_THECC9.7e-12670.50High mobility group family isoform 1 OS=Theobroma cacao GN=TCM_034318 PE=4 SV=1[more]
A0A0B0NYJ2_GOSAR1.5e-12370.43High mobility group B 9-like protein OS=Gossypium arboreum GN=F383_02064 PE=4 SV... [more]
BLAST of Csa4G652850 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G76110.19.0e-11568.85 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding d... [more]
AT1G04880.13.2e-7243.75 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding d... [more]
AT3G13350.12.0e-5842.96 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding d... [more]
AT1G55650.15.2e-4636.68 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding d... [more]
AT4G11080.18.9e-0635.00 HMG (high mobility group) box protein[more]
BLAST of Csa4G652850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449455571|ref|XP_004145526.1|3.5e-193100.00PREDICTED: high mobility group B protein 9 [Cucumis sativus][more]
gi|659104349|ref|XP_008452910.1|4.7e-19098.15PREDICTED: high mobility group B protein 9 [Cucumis melo][more]
gi|590594732|ref|XP_007017934.1|1.5e-12771.84High mobility group family isoform 2 [Theobroma cacao][more]
gi|1009108951|ref|XP_015887521.1|2.1e-12671.96PREDICTED: high mobility group B protein 9 [Ziziphus jujuba][more]
gi|590594728|ref|XP_007017933.1|1.4e-12570.50High mobility group family isoform 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001606ARID_dom
IPR009071HMG_box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006464 cellular protein modification process
biological_process GO:0007165 signal transduction
biological_process GO:0006996 organelle organization
biological_process GO:0006952 defense response
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0007275 multicellular organism development
biological_process GO:0000741 karyogamy
biological_process GO:0030154 cell differentiation
biological_process GO:0048856 anatomical structure development
biological_process GO:0008150 biological_process
biological_process GO:0071229 cellular response to acid chemical
biological_process GO:0051707 response to other organism
biological_process GO:0044767 single-organism developmental process
biological_process GO:0080090 regulation of primary metabolic process
biological_process GO:0060255 regulation of macromolecule metabolic process
biological_process GO:0031347 regulation of defense response
biological_process GO:0031323 regulation of cellular metabolic process
biological_process GO:0010197 polar nucleus fusion
biological_process GO:0006796 phosphate-containing compound metabolic process
biological_process GO:0045087 innate immune response
biological_process GO:1901701 cellular response to oxygen-containing compound
biological_process GO:0071310 cellular response to organic substance
biological_process GO:0044238 primary metabolic process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G652850.1Csa4G652850.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001606ARID DNA-binding domainGENE3DG3DSA:1.10.150.60coord: 34..124
score: 1.5
IPR001606ARID DNA-binding domainPFAMPF01388ARIDcoord: 35..116
score: 2.2
IPR001606ARID DNA-binding domainSMARTSM00501bright_3coord: 30..121
score: 3.4
IPR001606ARID DNA-binding domainPROFILEPS51011ARIDcoord: 29..120
score: 25
IPR001606ARID DNA-binding domainunknownSSF46774ARID-likecoord: 26..128
score: 7.72
IPR009071High mobility group box domainGENE3DG3DSA:1.10.30.10coord: 233..309
score: 4.1
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 238..305
score: 1.6
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 237..306
score: 1.2
IPR009071High mobility group box domainPROFILEPS50118HMG_BOX_2coord: 238..305
score: 14
IPR009071High mobility group box domainunknownSSF47095HMG-boxcoord: 235..308
score: 1.11
NoneNo IPR availableunknownCoilCoilcoord: 294..314
scor
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 1..191
score: 8.3E-156coord: 221..312
score: 8.3E
NoneNo IPR availablePANTHERPTHR13711:SF202HIGH MOBILITY GROUP B PROTEIN 10-RELATEDcoord: 221..312
score: 8.3E-156coord: 1..191
score: 8.3E
NoneNo IPR availableSMARTSM01014ARID_2coord: 26..116
score: 2.3