CmoCh09G000780 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G000780
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
Location	Cmo_Chr09 : 365833 .. 367975 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTCTTCTTCTTTTCTGATTTTCCGGCTGACTGGTTATGTCACCGCCGGCGAGGACCAAAAGCGGGAATGGCGGCGTAGATAAGCAGTATCCTCCGCCGCTTGCCACCCACGATGAAGTTGTTTCTGACCCCATTGTTTTTTGGGACACTTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGTGAGTCACACATACTTTCTTCTTCTTCTTCTTCTTGTGAATGAAATAAAGTAGCTTGATGGTATATTCATGGCGTATCCAGAACCACAAAACACCGCACTTTTACACTTTTCCGGTGTAAGAAATTTTTAATAAAATACAAGGCGGTCTCCTAATGGCTACTTTTGGCTTTCTTTGAATATTTTAAAGGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATTCAGAGGTTACAAGAAGGGGCGGGCACGAAAAGGTAAGATTTGGGGCTTGGTCTTCCATTTTCAACAAAAAGCTTCTTCTGGGTTTCAGAGATGGAGTTTGTGTGAATCCATTGTCATGGCGGTGTAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAGGTGTCTTCAAGTTCTCTCCTACAACCACCAGTGCTTCCTTTGTATTGAGAAAACATTATCTCAGTCTTCTCTACCACTACGAGCAAGTTTACTTGTTCCGCCGCCAGGGCCCCATCTGCGCCCCTCAAGGTGCCTTCTTTTTGTTCTCTCCTTCCCTTCTTTTTTTCCTTTTTTATAAACTTTATCCGCTTCTCCCACATCGGATTTGCTGTAACTCTGATTTCGCTTTTGTCTTCCTTTTTCTTTTTTCTACACAGCGCCATTTTCTTTCGGTAGCCCTACCAGCGAAAACGAATTGGCTCTGGTGGAATATGCCCCCAAAACAACGTCGTTTTCGCCTGGTCCGCCTGCTGAAGGTGACAAACCTTTTACTTTCACTTCTATTAATTCCTCTCTCTTTTCTTTGTGGGGTCCAGCTGTAAAGGTTATACAGTTCCCAACAATGGCTTCTATATAACTGACCCATTCCCACGTTTTATCTCTTCAAAATCTGTCTTCTTTTTTTTTTTGGGTGTTTTTCAGTCACTGGAACAATTGATGGGAAATTCGATTGTGGCTACCTGGTGTCTGTGAAGTTGGGATCTGAGGTTCTGAGGGGAGTTCTTTACCATCCAGAGGAGCCTACCCCGTCGGATCTCCGGCCCCAACCTACCAACGCCATTGTACCGTACACTGGTACCACACATCGACACTCTGGTCGGCGGCACCGGAGGAGCCGGAGAAAGGGAGACCCCAACCACCCCAAACCAAACAGAAGTGGCTATAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCTAACAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAACCTCAGCCCTGAAGAAAGGATGGTATGTCTGCCAAGCCTTTTCTCTCGAGGTTTCAGCAGCTTTAAACTTTGGTGGTTTGATCAAATGGGTGTTCTATCTACTTTATTATTAGGTTTATCAAAACATTGGGCTGAAAGACAAGGAGAGGTACAAGAGAGAGTTGAAAGAGTACAAGGAGAAAATGAGGCTGGCAAGTGATGATGTTCATGCAGCTAACTATTCAAAACAGGGAGAGTAGAAGAGGGAAGGGAATTCAGCAGTTTGTAGGTTCTTTTTGAGGTTGGGATCTGCTGCTGAAGTTTATATATGATAAAGATTTTGTATCATATCCTCCTACTCCTAACTTTATATGGCATACCATTACCATAGGTTCTCACATCCGAAGTGCTTGGCCTCAAGTTTTACACCCACTTCGAAGTTCACTCTGGAACTGTCATTTTATAGTTTCTTCAAACTTTTTGCTTCTTCTTTACCCATGGGATGGTGAGATCCTTCTTATTTTTCTTTTTTTGTCCTTCCTTGGAGTCAGAGACATCAGATGCTCTATGAAGACCCTTCATCCAAGGACGAGGAAGCCAACTAAATGAGCAGCTTTAGAAGATAGGCTTCTTCCTTCTGGGCTGCCACATTAGAGTAGAATATGCCATCGGTCAAATGATAAATGAGATTTGCAGTAATCTAAAGTTTTGTTTGAAG

mRNA sequence

TTTTTCTTCTTCTTTTCTGATTTTCCGGCTGACTGGTTATGTCACCGCCGGCGAGGACCAAAAGCGGGAATGGCGGCGTAGATAAGCAGTATCCTCCGCCGCTTGCCACCCACGATGAAGTTGTTTCTGACCCCATTGTTTTTTGGGACACTTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATTCAGAGGTTACAAGAAGGGGCGGGCACGAAAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAGGTGTCTTCAAGTTCTCTCCTACAACCACCAGTGCTTCCTTTGTATTGAGAAAACATTATCTCAGTCTTCTCTACCACTACGAGCAAGTTTACTTGTTCCGCCGCCAGGGCCCCATCTGCGCCCCTCAAGCGCCATTTTCTTTCGGTAGCCCTACCAGCGAAAACGAATTGGCTCTGGTGGAATATGCCCCCAAAACAACGTCGTTTTCGCCTGGTCCGCCTGCTGAAGTCACTGGAACAATTGATGGGAAATTCGATTGTGGCTACCTGGTGTCTGTGAAGTTGGGATCTGAGGTTCTGAGGGGAGTTCTTTACCATCCAGAGGAGCCTACCCCGTCGGATCTCCGGCCCCAACCTACCAACGCCATTGTACCGTACACTGGTACCACACATCGACACTCTGGTCGGCGGCACCGGAGGAGCCGGAGAAAGGGAGACCCCAACCACCCCAAACCAAACAGAAGTGGCTATAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCTAACAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAACCTCAGCCCTGAAGAAAGGATGGTTTATCAAAACATTGGGCTGAAAGACAAGGAGAGGTACAAGAGAGAGTTGAAAGAGTACAAGGAGAAAATGAGGCTGGCAAGTGATGATGTTCATGCAGCTAACTATTCAAAACAGGGAGAGTAGAAGAGGGAAGGGAATTCAGCAGTTTGTAGGTTCTTTTTGAGGTTCTCACATCCGAAGTGCTTGGCCTCAAGTTTTACACCCACTTCGAAGTTCACTCTGGAACTGTCATTTTATAGTTTCTTCAAACTTTTTGCTTCTTCTTTACCCATGGGATGGTGAGATCCTTCTTATTTTTCTTTTTTTGTCCTTCCTTGGAGTCAGAGACATCAGATGCTCTATGAAGACCCTTCATCCAAGGACGAGGAAGCCAACTAAATGAGCAGCTTTAGAAGATAGGCTTCTTCCTTCTGGGCTGCCACATTAGAGTAGAATATGCCATCGGTCAAATGATAAATGAGATTTGCAGTAATCTAAAGTTTTGTTTGAAG

Coding sequence (CDS)

ATGTCACCGCCGGCGAGGACCAAAAGCGGGAATGGCGGCGTAGATAAGCAGTATCCTCCGCCGCTTGCCACCCACGATGAAGTTGTTTCTGACCCCATTGTTTTTTGGGACACTTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATTCAGAGGTTACAAGAAGGGGCGGGCACGAAAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAGGTGTCTTCAAGTTCTCTCCTACAACCACCAGTGCTTCCTTTGTATTGAGAAAACATTATCTCAGTCTTCTCTACCACTACGAGCAAGTTTACTTGTTCCGCCGCCAGGGCCCCATCTGCGCCCCTCAAGCGCCATTTTCTTTCGGTAGCCCTACCAGCGAAAACGAATTGGCTCTGGTGGAATATGCCCCCAAAACAACGTCGTTTTCGCCTGGTCCGCCTGCTGAAGTCACTGGAACAATTGATGGGAAATTCGATTGTGGCTACCTGGTGTCTGTGAAGTTGGGATCTGAGGTTCTGAGGGGAGTTCTTTACCATCCAGAGGAGCCTACCCCGTCGGATCTCCGGCCCCAACCTACCAACGCCATTGTACCGTACACTGGTACCACACATCGACACTCTGGTCGGCGGCACCGGAGGAGCCGGAGAAAGGGAGACCCCAACCACCCCAAACCAAACAGAAGTGGCTATAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCTAACAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAACCTCAGCCCTGAAGAAAGGATGGTTTATCAAAACATTGGGCTGAAAGACAAGGAGAGGTACAAGAGAGAGTTGAAAGAGTACAAGGAGAAAATGAGGCTGGCAAGTGATGATGTTCATGCAGCTAACTATTCAAAACAGGGAGAGTAG

Homology

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BLAST of CmoCh09G000780 vs. Swiss-Prot
Match: HMGB9_ARATH (High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9 PE=2 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 7.9e-113
Identity = 212/313 (67.73%), Postives = 247/313 (78.91%), Query Frame = 1


Query: 16  KQYPPPLATHDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGH 75
           K+YP PLA H+ VV D  VFWDTLRRFH +M+TKFMIPVIGGKELDLHVLY EVTRRGG+
Sbjct: 25  KEYPEPLALHEVVVKDSSVFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYVEVTRRGGY 84

Query: 76  EKVVAEKKWREVGGVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFRRQGPICAPQAPFS 135
           EKVV EKKWREVGGVF+FS TTTSASFVLRKHYL+LL+HYEQV+LF  +GP+  P A F 
Sbjct: 85  EKVVVEKKWREVGGVFRFSATTTSASFVLRKHYLNLLFHYEQVHLFTARGPLLHPIATF- 144

Query: 136 FGSPTSENELALVEYAPKTTSF-SPGPPAE------VTGTIDGKFDCGYLVSVKLGSEVL 195
             +P++  E+ALVEY P +  + +  PP++        GTI+GKFDCGYLV VKLGSE+L
Sbjct: 145 HANPSTSKEMALVEYTPPSIRYHNTHPPSQGSSSFTAIGTIEGKFDCGYLVKVKLGSEIL 204

Query: 196 RGVLYHPEEPTPSDLRPQPT----NAIVPY--TGTTHRHSGRRHRRSRRKGDPNHPKPNR 255
            GVLYH  +P PS     PT    NA+VPY  TG   R  G+R RRSRR+ DPN+PKPNR
Sbjct: 205 NGVLYHSAQPGPSS---SPTAVLNNAVVPYVETGRRRRRLGKR-RRSRRREDPNYPKPNR 264

Query: 256 SGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELK 315
           SGYNFFFAEKH KLKSLYPN+EREFTK+IGESW+NLS EERMVYQ+IGLKDKERY+REL 
Sbjct: 265 SGYNFFFAEKHCKLKSLYPNKEREFTKLIGESWSNLSTEERMVYQDIGLKDKERYQRELN 324

[Close]

BLAST of CmoCh09G000780 vs. Swiss-Prot
Match: HMG15_ARATH (High mobility group B protein 15 OS=Arabidopsis thaliana GN=HMGB15 PE=2 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 9.1e-69
Identity = 145/334 (43.41%), Postives = 213/334 (63.77%), Query Frame = 1


Query: 1   MSPPARTKSGNGGVDKQYPPPLATHDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60
           M+  +  K G+  ++     P AT++ VV+DP +F  +L R H ++ TKFM+P+IGG++L
Sbjct: 1   MASSSCLKQGSVPMNNVCVTPEATYEAVVADPRLFMTSLERLHSLLGTKFMVPIIGGRDL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLH L+ EVT RGG  K++ E++W+EV   F F PT T+AS+VLRK+Y SLL +YEQ+Y 
Sbjct: 61  DLHKLFVEVTSRGGINKILNERRWKEVTATFVFPPTATNASYVLRKYYFSLLNNYEQIYF 120

Query: 121 FRRQG--PICAPQAP-----FSFGSPTSENELALVEYAPK----TTSFSPGPPA--EVTG 180
           FR  G  P  + Q+P     F  G+     EL  + + P+    T  F  G  A   V G
Sbjct: 121 FRSNGQIPPDSMQSPSARPCFIQGAIRPSQELQALTFTPQPKINTAEFLGGSLAGSNVVG 180

Query: 181 TIDGKFDCGYLVSVKLGSEVLRGVLYH-PEEPTPSDLRPQPTNAIVPYT--------GTT 240
            IDGKF+ GYLV+V +GSE L+GVLY    + T S   PQ ++ ++P T        G  
Sbjct: 181 VIDGKFESGYLVTVTIGSEQLKGVLYQLLPQNTVSYQTPQQSHGVLPNTLNISANPQGVA 240

Query: 241 HRHSGRRHRRSR---RKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESW 300
              + RR RR +   ++ DP+HPKPNRSGYNFFFAE+H +LK L+P ++R+ ++MIGE W
Sbjct: 241 GGVTKRRRRRKKSEIKRRDPDHPKPNRSGYNFFFAEQHARLKPLHPGKDRDISRMIGELW 300

Query: 301 NNLSPEERMVYQNIGLKDKERYKRELKEYKEKMR 310
           N L+ +E+++YQ   ++DKERY+ E+++Y+EK +
Sbjct: 301 NKLNEDEKLIYQGKAMEDKERYRTEMEDYREKKK 334

[Close]

BLAST of CmoCh09G000780 vs. Swiss-Prot
Match: HMG10_ARATH (High mobility group B protein 10 OS=Arabidopsis thaliana GN=HMGB10 PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 6.8e-56
Identity = 128/288 (44.44%), Postives = 171/288 (59.38%), Query Frame = 1


Query: 23  ATHDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEK 82
           A +D++V +  +FW+ LR F  + +    +P +GG  LDLH L+ EVT RGG E+VV ++
Sbjct: 34  AKYDDLVRNSALFWEKLRAFLGLTSKTLKVPTVGGNTLDLHRLFIEVTSRGGIERVVKDR 93

Query: 83  KWREVGGVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFRRQGPICAPQAPFSFGSPTSE 142
           KW+EV G F F  T TSASFVLRK+YL  L+  E VY   +         P S    T E
Sbjct: 94  KWKEVIGAFSFPTTITSASFVLRKYYLKFLFQLEHVYYLEK---------PVSSLQSTDE 153

Query: 143 NELALVEYAPKTTSFSPGPPA--EVTGTIDGKFDCGYLVSVKLGSEVLRGVLYH-PEEPT 202
              +L   +P        P    EV G IDGKFD GYLV++KLGS+ L+GVLYH P+ P+
Sbjct: 154 ALKSLANESPNPEEGIDEPQVGYEVQGFIDGKFDSGYLVTMKLGSQELKGVLYHIPQTPS 213

Query: 203 PSDLRPQPTNAIVPYTGTTHRHSGRRHRRSRRKG--DPNHPKPNRSGYNFFFAEKHYKLK 262
            S    +  +AIV       + S RRHR+  +    D   PK +RSGYNFFFAE++ +LK
Sbjct: 214 QSQQTMETPSAIV-------QSSQRRHRKKSKLAVVDTQKPKCHRSGYNFFFAEQYARLK 273

Query: 263 SLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYK 306
             Y  +ER  TK IG  W+NL+  E+ VYQ+ G+KD ERY+ E+ EYK
Sbjct: 274 PEYHGQERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLEYK 305

[Close]

BLAST of CmoCh09G000780 vs. Swiss-Prot
Match: HMG11_ARATH (Putative high mobility group B protein 11 OS=Arabidopsis thaliana GN=HMGB11 PE=3 SV=2)

HSP 1 Score: 179.9 bits (455), Expect = 4.6e-44
Identity = 108/296 (36.49%), Postives = 159/296 (53.72%), Query Frame = 1


Query: 25  HDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKW 84
           + ++V +P +FW+ LR FH   + KF IP++GGK LDLH L++EVT RGG EKV+ +++ 
Sbjct: 30  YQDIVRNPELFWEMLRDFHESSDKKFKIPIVGGKSLDLHRLFNEVTSRGGLEKVIKDRRC 89

Query: 85  REVGGVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFRRQGPICAPQAPFSFGSPTSENE 144
           +EV   F F  T T+++FVLRK YL +L+ +E +Y F         QAP S      +  
Sbjct: 90  KEVIDAFNFKTTITNSAFVLRKSYLKMLFEFEHLYYF---------QAPLSTFWEKEKAL 149

Query: 145 LALVEYAPKTTSFSP--GPPAEVTGTIDGKFDCGYLVSVKLGSEVLRGVLYHPEEPTPSD 204
             L+E +      S    P   +TG IDGKF+ GYL+S K+GSE L+G+LYH        
Sbjct: 150 KLLIEKSANRDKDSQELKPGTVITGIIDGKFESGYLISTKVGSEKLKGMLYH-------- 209

Query: 205 LRPQPTNAIVPYTGTTHRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPN 264
                   I P T       G++  +S +      PK  R+GYNFF AE+  ++K+    
Sbjct: 210 --------ISPET-----KRGKKKAKSSQGDSHKPPKRQRTGYNFFVAEQSVRIKAENAG 269

Query: 265 REREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEKMRLASDDVHAA 319
           ++    K  G  W NLS  +R VY     +D +RYK E+ +Y+  M     ++ AA
Sbjct: 270 QKVSSPKNFGNMWTNLSESDRKVYYEKSREDGKRYKMEILQYRSLMESRVAEIVAA 295

[Close]

BLAST of CmoCh09G000780 vs. Swiss-Prot
Match: ARID2_HUMAN (AT-rich interactive domain-containing protein 2 OS=Homo sapiens GN=ARID2 PE=1 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 1.9e-13
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 1


Query: 33  IVFWDTLRRFHFMMNTKFM-IPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGGVF 92
           + F D LR+FH    + F  IP +GGKELDLH LY+ VT  GG  KV  + +W E+   F
Sbjct: 17  LAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWGEIVEEF 76

Query: 93  KFSPTTTSASFVLRKHYLSLLYHYEQVYLFRRQGPICAPQAP 134
            F  + ++A+F L+++YL  L  YE+V+ F        P  P
Sbjct: 77  NFPRSCSNAAFALKQYYLRYLEKYEKVHHFGEDDDEVPPGNP 118

[Close]

BLAST of CmoCh09G000780 vs. TrEMBL
Match: E5GCD0_CUCME (High mobility group family OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 618.2 bits (1593), Expect = 5.6e-174
Identity = 299/325 (92.00%), Postives = 309/325 (95.08%), Query Frame = 1


Query: 1   MSPPARTKSGNGGVDKQYPPPLATHDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60
           MSPPARTK+ NGG+DK YPPPLATHDEV+SDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL
Sbjct: 1   MSPPARTKTWNGGLDKHYPPPLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVG VFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FRRQGPICAPQAPFSFGSPTSENELALVEYAPKTTSFSPGPPAEVTGTIDGKFDCGYLVS 180
           F RQGPIC PQAPFSFGSPTSENELALVEY PKTTSFSPGPP+EVTGTIDGKFDCGYLV+
Sbjct: 121 FGRQGPICVPQAPFSFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180

Query: 181 VKLGSEVLRGVLYHPEEPTPSDLRPQPTNAIVPYTGTTHRHSGRRHRRSRRKGDPNHPKP 240
           VKLGSEVLRGVLYHPE+P PSDLRP  TNAIVPYTG  HRHSGRRHRRSRRKGDPNHPKP
Sbjct: 181 VKLGSEVLRGVLYHPEQPPPSDLRPLSTNAIVPYTGGRHRHSGRRHRRSRRKGDPNHPKP 240

Query: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRE 300
           NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERY+RE
Sbjct: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300

Query: 301 LKEYKEKMRLASDDVHAANYSKQGE 326
           LKEYKEKMR+ + DV  ANYSK G+
Sbjct: 301 LKEYKEKMRMGT-DVDGANYSKHGD 324

[Close]

BLAST of CmoCh09G000780 vs. TrEMBL
Match: A0A0A0L181_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652850 PE=4 SV=1)

HSP 1 Score: 609.0 bits (1569), Expect = 3.4e-171
Identity = 295/325 (90.77%), Postives = 307/325 (94.46%), Query Frame = 1


Query: 1   MSPPARTKSGNGGVDKQYPPPLATHDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60
           MSPPARTK+ NGG+DK YPP LATHDEV+SDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL
Sbjct: 1   MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVG VFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FRRQGPICAPQAPFSFGSPTSENELALVEYAPKTTSFSPGPPAEVTGTIDGKFDCGYLVS 180
           F RQGPIC PQAPF FGSPTSENELALVEY PKTTSFSPGPP+EVTGTIDGKFDCGYLV+
Sbjct: 121 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180

Query: 181 VKLGSEVLRGVLYHPEEPTPSDLRPQPTNAIVPYTGTTHRHSGRRHRRSRRKGDPNHPKP 240
           VKLGSEVLRGVLYHP++P PSDLRP  TNAIVPYTG  +RHSGRRHRRSRRKGDPNHPKP
Sbjct: 181 VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP 240

Query: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRE 300
           NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERY+RE
Sbjct: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300

Query: 301 LKEYKEKMRLASDDVHAANYSKQGE 326
           LKEYKEKMRL + +V  ANYSK G+
Sbjct: 301 LKEYKEKMRLGT-EVDGANYSKHGD 324

[Close]

BLAST of CmoCh09G000780 vs. TrEMBL
Match: A0A061FL25_THECC (High mobility group family isoform 2 OS=Theobroma cacao GN=TCM_034318 PE=4 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 3.0e-127
Identity = 230/314 (73.25%), Postives = 256/314 (81.53%), Query Frame = 1


Query: 2   SPPARTKSGNGGVDK-QYPPPLATHDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 61
           S   +TK  NG V+K +YP PLA H+EVV DPIVFWDTLRRFHF+M TKFMIPVIGGKEL
Sbjct: 9   SSAGKTKGRNGAVEKKEYPDPLAYHEEVVQDPIVFWDTLRRFHFIMGTKFMIPVIGGKEL 68

Query: 62  DLHVLYSEVTRRGGHEKVVAEKKWREVGGVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 121
           DLHVLY E T+RGG+EKVVAEKKWREVG VF+FSPTTTSASFVLRKHY SLLYHYEQV+ 
Sbjct: 69  DLHVLYVEATKRGGYEKVVAEKKWREVGSVFRFSPTTTSASFVLRKHYFSLLYHYEQVHF 128

Query: 122 FRRQGPICAPQAPFSFGSPTSENELALVEYAPKTTSFSPGPPAEVTGTIDGKFDCGYLVS 181
           F+ +GP+  P   F    P+   ELALVEY+PK     P P  EV GTIDGKFDCGYL+S
Sbjct: 129 FKMKGPLHTPAVAFPVNDPSCRPELALVEYSPKPIREFPDPLIEVFGTIDGKFDCGYLIS 188

Query: 182 VKLGSEVLRGVLYHPEEPTPSDLRPQPTNAIVPYTGT-THRHSGRRHRRSRRKGDPNHPK 241
           V+LGSEVL GVLYHPE+P  S   P+  NA+VPY      RHS RR RRSRR GDP++PK
Sbjct: 189 VRLGSEVLSGVLYHPEQPGSSASTPEYNNALVPYKRIHKSRHSVRRRRRSRRAGDPSYPK 248

Query: 242 PNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKR 301
           PNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWN+L PEERMVYQNIGLKDKERYKR
Sbjct: 249 PNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNSLGPEERMVYQNIGLKDKERYKR 308

Query: 302 ELKEYKEKMRLASD 314
           ELKEYKE++++  D
Sbjct: 309 ELKEYKERLKIRQD 322

[Close]

BLAST of CmoCh09G000780 vs. TrEMBL
Match: A0A061FE61_THECC (High mobility group family isoform 1 OS=Theobroma cacao GN=TCM_034318 PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 2.8e-125
Identity = 230/320 (71.88%), Postives = 256/320 (80.00%), Query Frame = 1


Query: 2   SPPARTKSGNGGVDK-QYPPPLATHDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 61
           S   +TK  NG V+K +YP PLA H+EVV DPIVFWDTLRRFHF+M TKFMIPVIGGKEL
Sbjct: 9   SSAGKTKGRNGAVEKKEYPDPLAYHEEVVQDPIVFWDTLRRFHFIMGTKFMIPVIGGKEL 68

Query: 62  DLHVLYSEVTRRGGHEKVVAEKKWREVGGVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 121
           DLHVLY E T+RGG+EKVVAEKKWREVG VF+FSPTTTSASFVLRKHY SLLYHYEQV+ 
Sbjct: 69  DLHVLYVEATKRGGYEKVVAEKKWREVGSVFRFSPTTTSASFVLRKHYFSLLYHYEQVHF 128

Query: 122 FRRQGPICAPQAPFSFGSPTSENELALVEYAPKTTSFSPGPPAE------VTGTIDGKFD 181
           F+ +GP+  P   F    P+   ELALVEY+PK     P P  E      V GTIDGKFD
Sbjct: 129 FKMKGPLHTPAVAFPVNDPSCRPELALVEYSPKPIREFPDPLIEGTSCFSVFGTIDGKFD 188

Query: 182 CGYLVSVKLGSEVLRGVLYHPEEPTPSDLRPQPTNAIVPYTGT-THRHSGRRHRRSRRKG 241
           CGYL+SV+LGSEVL GVLYHPE+P  S   P+  NA+VPY      RHS RR RRSRR G
Sbjct: 189 CGYLISVRLGSEVLSGVLYHPEQPGSSASTPEYNNALVPYKRIHKSRHSVRRRRRSRRAG 248

Query: 242 DPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKD 301
           DP++PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWN+L PEERMVYQNIGLKD
Sbjct: 249 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNSLGPEERMVYQNIGLKD 308

Query: 302 KERYKRELKEYKEKMRLASD 314
           KERYKRELKEYKE++++  D
Sbjct: 309 KERYKRELKEYKERLKIRQD 328

[Close]

BLAST of CmoCh09G000780 vs. TrEMBL
Match: A0A067GZ29_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020305mg PE=4 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 3.2e-121
Identity = 225/317 (70.98%), Postives = 250/317 (78.86%), Query Frame = 1


Query: 2   SPPARTKSGNGGVDKQYPPPLATHDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKELD 61
           S  A+TK  +   DK YP PL++H++V  DPIVFWDTLRRFHF+M TKFMIPVIGGKELD
Sbjct: 4   SSAAKTKGRSVVEDKLYPAPLSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELD 63

Query: 62  LHVLYSEVTRRGGHEKVVAEKKWREVGGVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLF 121
           LHVLY E T RGG+EKVVAEKKWREVG VFKFSPTTTSASFVLRKHYL+LLYHYEQV+ F
Sbjct: 64  LHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFF 123

Query: 122 RRQGPICAPQAPFSFGSPTSENELALVEYAPKTTSFSPGPPAE------VTGTIDGKFDC 181
           + QGP C P A FS  SP+    LALVEY+PK  +  P    E        G IDGKFDC
Sbjct: 124 KMQGPPCVPSASFSVHSPSCRPGLALVEYSPKRINDHPDSHIEGQSCFTAVGRIDGKFDC 183

Query: 182 GYLVSVKLGSEVLRGVLYHPEEPTPSD--LRPQPTNAIVPYTGTTHRHSGRRHRRSRRKG 241
           GYLVSVKLGSE L GVLYHP+ P PS    +     AI+PYT  + R  GRR RRS+R+G
Sbjct: 184 GYLVSVKLGSETLSGVLYHPDHPGPSTSFCQSNDVGAIIPYTPNSKRRYGRR-RRSKRRG 243

Query: 242 DPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKD 301
           DP++PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESW NLSPEER VYQNIGLKD
Sbjct: 244 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKD 303

Query: 302 KERYKRELKEYKEKMRL 311
           KERY RELKEYKE+++L
Sbjct: 304 KERYNRELKEYKERLKL 319

[Close]

BLAST of CmoCh09G000780 vs. TAIR10
Match: AT1G76110.1 (AT1G76110.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain)

HSP 1 Score: 408.3 bits (1048), Expect = 4.4e-114
Identity = 212/313 (67.73%), Postives = 247/313 (78.91%), Query Frame = 1


Query: 16  KQYPPPLATHDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGH 75
           K+YP PLA H+ VV D  VFWDTLRRFH +M+TKFMIPVIGGKELDLHVLY EVTRRGG+
Sbjct: 25  KEYPEPLALHEVVVKDSSVFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYVEVTRRGGY 84

Query: 76  EKVVAEKKWREVGGVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFRRQGPICAPQAPFS 135
           EKVV EKKWREVGGVF+FS TTTSASFVLRKHYL+LL+HYEQV+LF  +GP+  P A F 
Sbjct: 85  EKVVVEKKWREVGGVFRFSATTTSASFVLRKHYLNLLFHYEQVHLFTARGPLLHPIATF- 144

Query: 136 FGSPTSENELALVEYAPKTTSF-SPGPPAE------VTGTIDGKFDCGYLVSVKLGSEVL 195
             +P++  E+ALVEY P +  + +  PP++        GTI+GKFDCGYLV VKLGSE+L
Sbjct: 145 HANPSTSKEMALVEYTPPSIRYHNTHPPSQGSSSFTAIGTIEGKFDCGYLVKVKLGSEIL 204

Query: 196 RGVLYHPEEPTPSDLRPQPT----NAIVPY--TGTTHRHSGRRHRRSRRKGDPNHPKPNR 255
            GVLYH  +P PS     PT    NA+VPY  TG   R  G+R RRSRR+ DPN+PKPNR
Sbjct: 205 NGVLYHSAQPGPSS---SPTAVLNNAVVPYVETGRRRRRLGKR-RRSRRREDPNYPKPNR 264

Query: 256 SGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELK 315
           SGYNFFFAEKH KLKSLYPN+EREFTK+IGESW+NLS EERMVYQ+IGLKDKERY+REL 
Sbjct: 265 SGYNFFFAEKHCKLKSLYPNKEREFTKLIGESWSNLSTEERMVYQDIGLKDKERYQRELN 324

[Close]

BLAST of CmoCh09G000780 vs. TAIR10
Match: AT1G04880.1 (AT1G04880.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain)

HSP 1 Score: 261.9 bits (668), Expect = 5.1e-70
Identity = 145/334 (43.41%), Postives = 213/334 (63.77%), Query Frame = 1


Query: 1   MSPPARTKSGNGGVDKQYPPPLATHDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60
           M+  +  K G+  ++     P AT++ VV+DP +F  +L R H ++ TKFM+P+IGG++L
Sbjct: 1   MASSSCLKQGSVPMNNVCVTPEATYEAVVADPRLFMTSLERLHSLLGTKFMVPIIGGRDL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLH L+ EVT RGG  K++ E++W+EV   F F PT T+AS+VLRK+Y SLL +YEQ+Y 
Sbjct: 61  DLHKLFVEVTSRGGINKILNERRWKEVTATFVFPPTATNASYVLRKYYFSLLNNYEQIYF 120

Query: 121 FRRQG--PICAPQAP-----FSFGSPTSENELALVEYAPK----TTSFSPGPPA--EVTG 180
           FR  G  P  + Q+P     F  G+     EL  + + P+    T  F  G  A   V G
Sbjct: 121 FRSNGQIPPDSMQSPSARPCFIQGAIRPSQELQALTFTPQPKINTAEFLGGSLAGSNVVG 180

Query: 181 TIDGKFDCGYLVSVKLGSEVLRGVLYH-PEEPTPSDLRPQPTNAIVPYT--------GTT 240
            IDGKF+ GYLV+V +GSE L+GVLY    + T S   PQ ++ ++P T        G  
Sbjct: 181 VIDGKFESGYLVTVTIGSEQLKGVLYQLLPQNTVSYQTPQQSHGVLPNTLNISANPQGVA 240

Query: 241 HRHSGRRHRRSR---RKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESW 300
              + RR RR +   ++ DP+HPKPNRSGYNFFFAE+H +LK L+P ++R+ ++MIGE W
Sbjct: 241 GGVTKRRRRRKKSEIKRRDPDHPKPNRSGYNFFFAEQHARLKPLHPGKDRDISRMIGELW 300

Query: 301 NNLSPEERMVYQNIGLKDKERYKRELKEYKEKMR 310
           N L+ +E+++YQ   ++DKERY+ E+++Y+EK +
Sbjct: 301 NKLNEDEKLIYQGKAMEDKERYRTEMEDYREKKK 334

[Close]

BLAST of CmoCh09G000780 vs. TAIR10
Match: AT3G13350.1 (AT3G13350.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain)

HSP 1 Score: 219.2 bits (557), Expect = 3.8e-57
Identity = 128/288 (44.44%), Postives = 171/288 (59.38%), Query Frame = 1


Query: 23  ATHDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEK 82
           A +D++V +  +FW+ LR F  + +    +P +GG  LDLH L+ EVT RGG E+VV ++
Sbjct: 34  AKYDDLVRNSALFWEKLRAFLGLTSKTLKVPTVGGNTLDLHRLFIEVTSRGGIERVVKDR 93

Query: 83  KWREVGGVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFRRQGPICAPQAPFSFGSPTSE 142
           KW+EV G F F  T TSASFVLRK+YL  L+  E VY   +         P S    T E
Sbjct: 94  KWKEVIGAFSFPTTITSASFVLRKYYLKFLFQLEHVYYLEK---------PVSSLQSTDE 153

Query: 143 NELALVEYAPKTTSFSPGPPA--EVTGTIDGKFDCGYLVSVKLGSEVLRGVLYH-PEEPT 202
              +L   +P        P    EV G IDGKFD GYLV++KLGS+ L+GVLYH P+ P+
Sbjct: 154 ALKSLANESPNPEEGIDEPQVGYEVQGFIDGKFDSGYLVTMKLGSQELKGVLYHIPQTPS 213

Query: 203 PSDLRPQPTNAIVPYTGTTHRHSGRRHRRSRRKG--DPNHPKPNRSGYNFFFAEKHYKLK 262
            S    +  +AIV       + S RRHR+  +    D   PK +RSGYNFFFAE++ +LK
Sbjct: 214 QSQQTMETPSAIV-------QSSQRRHRKKSKLAVVDTQKPKCHRSGYNFFFAEQYARLK 273

Query: 263 SLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYK 306
             Y  +ER  TK IG  W+NL+  E+ VYQ+ G+KD ERY+ E+ EYK
Sbjct: 274 PEYHGQERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLEYK 305

[Close]

BLAST of CmoCh09G000780 vs. TAIR10
Match: AT1G55650.1 (AT1G55650.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain)

HSP 1 Score: 179.9 bits (455), Expect = 2.6e-45
Identity = 108/296 (36.49%), Postives = 159/296 (53.72%), Query Frame = 1


Query: 25  HDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKW 84
           + ++V +P +FW+ LR FH   + KF IP++GGK LDLH L++EVT RGG EKV+ +++ 
Sbjct: 30  YQDIVRNPELFWEMLRDFHESSDKKFKIPIVGGKSLDLHRLFNEVTSRGGLEKVIKDRRC 89

Query: 85  REVGGVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFRRQGPICAPQAPFSFGSPTSENE 144
           +EV   F F  T T+++FVLRK YL +L+ +E +Y F         QAP S      +  
Sbjct: 90  KEVIDAFNFKTTITNSAFVLRKSYLKMLFEFEHLYYF---------QAPLSTFWEKEKAL 149

Query: 145 LALVEYAPKTTSFSP--GPPAEVTGTIDGKFDCGYLVSVKLGSEVLRGVLYHPEEPTPSD 204
             L+E +      S    P   +TG IDGKF+ GYL+S K+GSE L+G+LYH        
Sbjct: 150 KLLIEKSANRDKDSQELKPGTVITGIIDGKFESGYLISTKVGSEKLKGMLYH-------- 209

Query: 205 LRPQPTNAIVPYTGTTHRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPN 264
                   I P T       G++  +S +      PK  R+GYNFF AE+  ++K+    
Sbjct: 210 --------ISPET-----KRGKKKAKSSQGDSHKPPKRQRTGYNFFVAEQSVRIKAENAG 269

Query: 265 REREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEKMRLASDDVHAA 319
           ++    K  G  W NLS  +R VY     +D +RYK E+ +Y+  M     ++ AA
Sbjct: 270 QKVSSPKNFGNMWTNLSESDRKVYYEKSREDGKRYKMEILQYRSLMESRVAEIVAA 295

[Close]

BLAST of CmoCh09G000780 vs. NCBI nr
Match: gi|659104349|ref|XP_008452910.1| (PREDICTED: high mobility group B protein 9 [Cucumis melo])

HSP 1 Score: 618.2 bits (1593), Expect = 8.0e-174
Identity = 299/325 (92.00%), Postives = 309/325 (95.08%), Query Frame = 1


Query: 1   MSPPARTKSGNGGVDKQYPPPLATHDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60
           MSPPARTK+ NGG+DK YPPPLATHDEV+SDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL
Sbjct: 1   MSPPARTKTWNGGLDKHYPPPLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVG VFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FRRQGPICAPQAPFSFGSPTSENELALVEYAPKTTSFSPGPPAEVTGTIDGKFDCGYLVS 180
           F RQGPIC PQAPFSFGSPTSENELALVEY PKTTSFSPGPP+EVTGTIDGKFDCGYLV+
Sbjct: 121 FGRQGPICVPQAPFSFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180

Query: 181 VKLGSEVLRGVLYHPEEPTPSDLRPQPTNAIVPYTGTTHRHSGRRHRRSRRKGDPNHPKP 240
           VKLGSEVLRGVLYHPE+P PSDLRP  TNAIVPYTG  HRHSGRRHRRSRRKGDPNHPKP
Sbjct: 181 VKLGSEVLRGVLYHPEQPPPSDLRPLSTNAIVPYTGGRHRHSGRRHRRSRRKGDPNHPKP 240

Query: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRE 300
           NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERY+RE
Sbjct: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300

Query: 301 LKEYKEKMRLASDDVHAANYSKQGE 326
           LKEYKEKMR+ + DV  ANYSK G+
Sbjct: 301 LKEYKEKMRMGT-DVDGANYSKHGD 324

[Close]

BLAST of CmoCh09G000780 vs. NCBI nr
Match: gi|449455571|ref|XP_004145526.1| (PREDICTED: high mobility group B protein 9 [Cucumis sativus])

HSP 1 Score: 609.0 bits (1569), Expect = 4.9e-171
Identity = 295/325 (90.77%), Postives = 307/325 (94.46%), Query Frame = 1


Query: 1   MSPPARTKSGNGGVDKQYPPPLATHDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60
           MSPPARTK+ NGG+DK YPP LATHDEV+SDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL
Sbjct: 1   MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVG VFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FRRQGPICAPQAPFSFGSPTSENELALVEYAPKTTSFSPGPPAEVTGTIDGKFDCGYLVS 180
           F RQGPIC PQAPF FGSPTSENELALVEY PKTTSFSPGPP+EVTGTIDGKFDCGYLV+
Sbjct: 121 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180

Query: 181 VKLGSEVLRGVLYHPEEPTPSDLRPQPTNAIVPYTGTTHRHSGRRHRRSRRKGDPNHPKP 240
           VKLGSEVLRGVLYHP++P PSDLRP  TNAIVPYTG  +RHSGRRHRRSRRKGDPNHPKP
Sbjct: 181 VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP 240

Query: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRE 300
           NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERY+RE
Sbjct: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300

Query: 301 LKEYKEKMRLASDDVHAANYSKQGE 326
           LKEYKEKMRL + +V  ANYSK G+
Sbjct: 301 LKEYKEKMRLGT-EVDGANYSKHGD 324

[Close]

BLAST of CmoCh09G000780 vs. NCBI nr
Match: gi|590594732|ref|XP_007017934.1| (High mobility group family isoform 2 [Theobroma cacao])

HSP 1 Score: 463.0 bits (1190), Expect = 4.3e-127
Identity = 230/314 (73.25%), Postives = 256/314 (81.53%), Query Frame = 1


Query: 2   SPPARTKSGNGGVDK-QYPPPLATHDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 61
           S   +TK  NG V+K +YP PLA H+EVV DPIVFWDTLRRFHF+M TKFMIPVIGGKEL
Sbjct: 9   SSAGKTKGRNGAVEKKEYPDPLAYHEEVVQDPIVFWDTLRRFHFIMGTKFMIPVIGGKEL 68

Query: 62  DLHVLYSEVTRRGGHEKVVAEKKWREVGGVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 121
           DLHVLY E T+RGG+EKVVAEKKWREVG VF+FSPTTTSASFVLRKHY SLLYHYEQV+ 
Sbjct: 69  DLHVLYVEATKRGGYEKVVAEKKWREVGSVFRFSPTTTSASFVLRKHYFSLLYHYEQVHF 128

Query: 122 FRRQGPICAPQAPFSFGSPTSENELALVEYAPKTTSFSPGPPAEVTGTIDGKFDCGYLVS 181
           F+ +GP+  P   F    P+   ELALVEY+PK     P P  EV GTIDGKFDCGYL+S
Sbjct: 129 FKMKGPLHTPAVAFPVNDPSCRPELALVEYSPKPIREFPDPLIEVFGTIDGKFDCGYLIS 188

Query: 182 VKLGSEVLRGVLYHPEEPTPSDLRPQPTNAIVPYTGT-THRHSGRRHRRSRRKGDPNHPK 241
           V+LGSEVL GVLYHPE+P  S   P+  NA+VPY      RHS RR RRSRR GDP++PK
Sbjct: 189 VRLGSEVLSGVLYHPEQPGSSASTPEYNNALVPYKRIHKSRHSVRRRRRSRRAGDPSYPK 248

Query: 242 PNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKR 301
           PNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWN+L PEERMVYQNIGLKDKERYKR
Sbjct: 249 PNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNSLGPEERMVYQNIGLKDKERYKR 308

Query: 302 ELKEYKEKMRLASD 314
           ELKEYKE++++  D
Sbjct: 309 ELKEYKERLKIRQD 322

[Close]

BLAST of CmoCh09G000780 vs. NCBI nr
Match: gi|590594728|ref|XP_007017933.1| (High mobility group family isoform 1 [Theobroma cacao])

HSP 1 Score: 456.4 bits (1173), Expect = 4.0e-125
Identity = 230/320 (71.88%), Postives = 256/320 (80.00%), Query Frame = 1


Query: 2   SPPARTKSGNGGVDK-QYPPPLATHDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 61
           S   +TK  NG V+K +YP PLA H+EVV DPIVFWDTLRRFHF+M TKFMIPVIGGKEL
Sbjct: 9   SSAGKTKGRNGAVEKKEYPDPLAYHEEVVQDPIVFWDTLRRFHFIMGTKFMIPVIGGKEL 68

Query: 62  DLHVLYSEVTRRGGHEKVVAEKKWREVGGVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 121
           DLHVLY E T+RGG+EKVVAEKKWREVG VF+FSPTTTSASFVLRKHY SLLYHYEQV+ 
Sbjct: 69  DLHVLYVEATKRGGYEKVVAEKKWREVGSVFRFSPTTTSASFVLRKHYFSLLYHYEQVHF 128

Query: 122 FRRQGPICAPQAPFSFGSPTSENELALVEYAPKTTSFSPGPPAE------VTGTIDGKFD 181
           F+ +GP+  P   F    P+   ELALVEY+PK     P P  E      V GTIDGKFD
Sbjct: 129 FKMKGPLHTPAVAFPVNDPSCRPELALVEYSPKPIREFPDPLIEGTSCFSVFGTIDGKFD 188

Query: 182 CGYLVSVKLGSEVLRGVLYHPEEPTPSDLRPQPTNAIVPYTGT-THRHSGRRHRRSRRKG 241
           CGYL+SV+LGSEVL GVLYHPE+P  S   P+  NA+VPY      RHS RR RRSRR G
Sbjct: 189 CGYLISVRLGSEVLSGVLYHPEQPGSSASTPEYNNALVPYKRIHKSRHSVRRRRRSRRAG 248

Query: 242 DPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKD 301
           DP++PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWN+L PEERMVYQNIGLKD
Sbjct: 249 DPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNSLGPEERMVYQNIGLKD 308

Query: 302 KERYKRELKEYKEKMRLASD 314
           KERYKRELKEYKE++++  D
Sbjct: 309 KERYKRELKEYKERLKIRQD 328

[Close]

BLAST of CmoCh09G000780 vs. NCBI nr
Match: gi|1009108951|ref|XP_015887521.1| (PREDICTED: high mobility group B protein 9 [Ziziphus jujuba])

HSP 1 Score: 451.1 bits (1159), Expect = 1.7e-123
Identity = 232/323 (71.83%), Postives = 258/323 (79.88%), Query Frame = 1


Query: 1   MSPPARTKSGNGGVDKQYPPPLATHDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60
           MS   R    NG     YP PLA+H++VV DPIVFWDTLRRFHF+MNTKFMIPVIGGKEL
Sbjct: 1   MSAEGRNTGWNGVQGVHYPAPLASHEDVVKDPIVFWDTLRRFHFLMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGGVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLH+LY EVTRRGG EKVVAEKKWREVG +F FSPTTTSASFVLRKHY  LLYHYEQVY 
Sbjct: 61  DLHILYVEVTRRGGFEKVVAEKKWREVGTIFMFSPTTTSASFVLRKHYSCLLYHYEQVYF 120

Query: 121 FRRQGPICAPQAPFSFGSPTS--ENELALVEYAPKTTSFSPGPPAEVTGTIDGKFDCGYL 180
           F+ QGP C P    +  SP S  + ELA+V+Y+ K     P P  E  GTIDGKF+CGYL
Sbjct: 121 FKIQGPPCTP----TVASPVSSFKPELAIVQYSSKAIKDCPDPLIEGIGTIDGKFECGYL 180

Query: 181 VSVKLGSEVLRGVLYHPEEPTPSDLRPQPTNAIVPYTGTTHRHSGRRHRRSRRKGDPNHP 240
           VSVKLGSE+L GVLYHPE+P  S   PQ +NA+VPYTG   RH   R RRSRR+GDPN+P
Sbjct: 181 VSVKLGSEILSGVLYHPEQPGTSIPIPQSSNALVPYTGKP-RHV--RRRRSRRRGDPNYP 240

Query: 241 KPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYK 300
           KPNRSGYNFFFAEKHYKLKSL+PNREREFTKMIGESW+NLSPEERMVYQNIGLKDKERYK
Sbjct: 241 KPNRSGYNFFFAEKHYKLKSLFPNREREFTKMIGESWSNLSPEERMVYQNIGLKDKERYK 300

Query: 301 RELKEYKEKMRLASD-DVHAANY 321
           RELKEYKE+M++    +V+ A Y
Sbjct: 301 RELKEYKERMKVRQTVEVNRAGY 316

The following BLAST results are available for this feature:

BLAST of CmoCh09G000780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HMGB9_ARATH	7.9e-113	67.73	High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9 PE=2 SV=1	[more]
HMG15_ARATH	9.1e-69	43.41	High mobility group B protein 15 OS=Arabidopsis thaliana GN=HMGB15 PE=2 SV=1	[more]
HMG10_ARATH	6.8e-56	44.44	High mobility group B protein 10 OS=Arabidopsis thaliana GN=HMGB10 PE=2 SV=1	[more]
HMG11_ARATH	4.6e-44	36.49	Putative high mobility group B protein 11 OS=Arabidopsis thaliana GN=HMGB11 PE=3...	[more]
ARID2_HUMAN	1.9e-13	40.20	AT-rich interactive domain-containing protein 2 OS=Homo sapiens GN=ARID2 PE=1 SV...	[more]

BLAST of CmoCh09G000780 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCD0_CUCME	5.6e-174	92.00	High mobility group family OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0L181_CUCSA	3.4e-171	90.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652850 PE=4 SV=1	[more]
A0A061FL25_THECC	3.0e-127	73.25	High mobility group family isoform 2 OS=Theobroma cacao GN=TCM_034318 PE=4 SV=1	[more]
A0A061FE61_THECC	2.8e-125	71.88	High mobility group family isoform 1 OS=Theobroma cacao GN=TCM_034318 PE=4 SV=1	[more]
A0A067GZ29_CITSI	3.2e-121	70.98	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020305mg PE=4 SV=1	[more]

BLAST of CmoCh09G000780 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76110.1	4.4e-114	67.73	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding d...	[more]
AT1G04880.1	5.1e-70	43.41	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding d...	[more]
AT3G13350.1	3.8e-57	44.44	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding d...	[more]
AT1G55650.1	2.6e-45	36.49	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding d...	[more]

BLAST of CmoCh09G000780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659104349\|ref\|XP_008452910.1\|	8.0e-174	92.00	PREDICTED: high mobility group B protein 9 [Cucumis melo]	[more]
gi\|449455571\|ref\|XP_004145526.1\|	4.9e-171	90.77	PREDICTED: high mobility group B protein 9 [Cucumis sativus]	[more]
gi\|590594732\|ref\|XP_007017934.1\|	4.3e-127	73.25	High mobility group family isoform 2 [Theobroma cacao]	[more]
gi\|590594728\|ref\|XP_007017933.1\|	4.0e-125	71.88	High mobility group family isoform 1 [Theobroma cacao]	[more]
gi\|1009108951\|ref\|XP_015887521.1\|	1.7e-123	71.83	PREDICTED: high mobility group B protein 9 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001606	ARID_dom
IPR009071	HMG_box_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006464	cellular protein modification process
biological_process	GO:0071229	cellular response to acid chemical
biological_process	GO:0008150	biological_process
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0000741	karyogamy
biological_process	GO:0030154	cell differentiation
biological_process	GO:0048856	anatomical structure development
biological_process	GO:0007165	signal transduction
biological_process	GO:0051707	response to other organism
biological_process	GO:0080090	regulation of primary metabolic process
biological_process	GO:0060255	regulation of macromolecule metabolic process
biological_process	GO:0031347	regulation of defense response
biological_process	GO:0031323	regulation of cellular metabolic process
biological_process	GO:0010197	polar nucleus fusion
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0045087	innate immune response
biological_process	GO:1901701	cellular response to oxygen-containing compound
biological_process	GO:0071310	cellular response to organic substance
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G000780.1	CmoCh09G000780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001606	ARID DNA-binding domain	GENE3D	G3DSA:1.10.150.60		coord: 34..126 score: 2.3
IPR001606	ARID DNA-binding domain	PFAM	PF01388	ARID	coord: 35..116 score: 3.3
IPR001606	ARID DNA-binding domain	SMART	SM00501	bright_3	coord: 30..121 score: 9.4
IPR001606	ARID DNA-binding domain	PROFILE	PS51011	ARID	coord: 29..120 score: 24
IPR001606	ARID DNA-binding domain	unknown	SSF46774	ARID-like	coord: 25..127 score: 1.28
IPR009071	High mobility group box domain	GENE3D	G3DSA:1.10.30.10		coord: 233..309 score: 3.3
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 238..305 score: 3.0
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 237..306 score: 2.0
IPR009071	High mobility group box domain	PROFILE	PS50118	HMG_BOX_2	coord: 238..305 score: 14
IPR009071	High mobility group box domain	unknown	SSF47095	HMG-box	coord: 235..308 score: 9.03
None	No IPR available	unknown	Coil	Coil	coord: 294..314 scor
None	No IPR available	PANTHER	PTHR13711	SWI/SNF-RELATED CHROMATIN BINDING PROTEIN	coord: 1..191 score: 1.2E-158coord: 221..309 score: 1.2E
None	No IPR available	PANTHER	PTHR13711:SF202	HIGH MOBILITY GROUP B PROTEIN 10-RELATED	coord: 1..191 score: 1.2E-158coord: 221..309 score: 1.2E
None	No IPR available	SMART	SM01014	ARID_2	coord: 26..116 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh09G000780	Cucsa.271870	Cucumber (Gy14) v1	cgycmoB0742
CmoCh09G000780	CmaCh09G000790	Cucurbita maxima (Rimu)	cmacmoB027
CmoCh09G000780	CmaCh01G019930	Cucurbita maxima (Rimu)	cmacmoB435
CmoCh09G000780	Cla007412	Watermelon (97103) v1	cmowmB021
CmoCh09G000780	Csa4G652850	Cucumber (Chinese Long) v2	cmocuB015
CmoCh09G000780	MELO3C016999	Melon (DHL92) v3.5.1	cmomeB026
CmoCh09G000780	ClCG05G015360	Watermelon (Charleston Gray)	cmowcgB018
CmoCh09G000780	CSPI04G26640	Wild cucumber (PI 183967)	cmocpiB016
CmoCh09G000780	Lsi04G017840	Bottle gourd (USVL1VR-Ls)	cmolsiB012
CmoCh09G000780	Cp4.1LG02g08200	Cucurbita pepo (Zucchini)	cmocpeB020
CmoCh09G000780	Cp4.1LG06g00400	Cucurbita pepo (Zucchini)	cmocpeB034
CmoCh09G000780	MELO3C016999.2	Melon (DHL92) v3.6.1	cmomedB026
CmoCh09G000780	CsaV3_4G037000	Cucumber (Chinese Long) v3	cmocucB0020
CmoCh09G000780	Cla97C05G096410	Watermelon (97103) v2	cmowmbB017
CmoCh09G000780	CsGy4G024980	Cucumber (Gy14) v2	cgybcmoB438
CmoCh09G000780	Carg21390	Silver-seed gourd	carcmoB0484
CmoCh09G000780	Carg08652	Silver-seed gourd	carcmoB0144

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh09G000780	CmoCh01G020540	Cucurbita moschata (Rifu)	cmocmoB017

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G000780	Cucurbita maxima (Rimu)	cmacmoB755
CmoCh09G000780	Cucurbita pepo (Zucchini)	cmocpeB011
CmoCh09G000780	Silver-seed gourd	carcmoB0190
CmoCh09G000780	Wax gourd	cmowgoB0023
CmoCh09G000780	Cucurbita moschata (Rifu)	cmocmoB033