Csa4G637720 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G637720
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 20789689 .. 20789936 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCAGGTTGATTCTCAAGGACATCAAAGCCCCTCTCCGATTCCTTCTCCGCAATCCAGCTTCATCCGCTCCTTCTGCACAAGCCATCCAAAATCTCCTCCTCCCAATTCCAAGGCAATCTCCACCCGTAGTCCTCCCCCAGGTTTGTACTCGCGATCGGCCGCAACTATCTGGGGTTCTCAATTCTATTGTTGATGGCGGATTTAGGATCGAGGTCAGAGGGCAGCAGAAGCTGATGCATGA

mRNA sequence

ATGGCTTCCAGGTTGATTCTCAAGGACATCAAAGCCCCTCTCCGATTCCTTCTCCGCAATCCAGCTTCATCCGCTCCTTCTGCACAAGCCATCCAAAATCTCCTCCTCCCAATTCCAAGGCAATCTCCACCCGTAGTCCTCCCCCAGGATCGAGGTCAGAGGGCAGCAGAAGCTGATGCATGA

Coding sequence (CDS)

ATGGCTTCCAGGTTGATTCTCAAGGACATCAAAGCCCCTCTCCGATTCCTTCTCCGCAATCCAGCTTCATCCGCTCCTTCTGCACAAGCCATCCAAAATCTCCTCCTCCCAATTCCAAGGCAATCTCCACCCGTAGTCCTCCCCCAGGATCGAGGTCAGAGGGCAGCAGAAGCTGATGCATGA

Protein sequence

MASRLILKDIKAPLRFLLRNPASSAPSAQAIQNLLLPIPRQSPPVVLPQDRGQRAAEADA*
Homology
[Close]
BLAST of Csa4G637720 vs. TrEMBL
Match: A0A0A0L3F1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G637720 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 5.8e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MASRLILKDIKAPLRFLLRNPASSAPSAQAIQNLLLPIPRQSPPVVLPQDRGQRAAEADA 60
          MASRLILKDIKAPLRFLLRNPASSAPSAQAIQNLLLPIPRQSPPVVLPQDRGQRAAEADA
Sbjct: 1  MASRLILKDIKAPLRFLLRNPASSAPSAQAIQNLLLPIPRQSPPVVLPQDRGQRAAEADA 60

[Close]
BLAST of Csa4G637720 vs. NCBI nr
Match: gi|700199974|gb|KGN55132.1| (hypothetical protein Csa_4G637720 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 8.3e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MASRLILKDIKAPLRFLLRNPASSAPSAQAIQNLLLPIPRQSPPVVLPQDRGQRAAEADA 60
          MASRLILKDIKAPLRFLLRNPASSAPSAQAIQNLLLPIPRQSPPVVLPQDRGQRAAEADA
Sbjct: 1  MASRLILKDIKAPLRFLLRNPASSAPSAQAIQNLLLPIPRQSPPVVLPQDRGQRAAEADA 60

The following BLAST results are available for this feature:
BLAST of Csa4G637720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3F1_CUCSA5.8e-24100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G637720 PE=4 SV=1[more]
BLAST of Csa4G637720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199974|gb|KGN55132.1|8.3e-24100.00hypothetical protein Csa_4G637720 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU131047cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G637720.1Csa4G637720.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU131047CU131047transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G637720MELO3C016703Melon (DHL92) v3.5.1cumeB313
Csa4G637720MELO3C016703.2Melon (DHL92) v3.6.1cumedB298
Csa4G637720Bhi09G002798Wax gourdcuwgoB419
Csa4G637720CSPI04G23530Wild cucumber (PI 183967)cpicuB181
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G637720Cucurbita pepo (Zucchini)cpecuB523
Csa4G637720Cucurbita pepo (Zucchini)cpecuB565
Csa4G637720Cucurbita pepo (Zucchini)cpecuB783
Csa4G637720Bottle gourd (USVL1VR-Ls)culsiB257
Csa4G637720Bottle gourd (USVL1VR-Ls)culsiB274
Csa4G637720Bottle gourd (USVL1VR-Ls)culsiB293
Csa4G637720Cucumber (Gy14) v2cgybcuB031
Csa4G637720Cucumber (Gy14) v2cgybcuB166
Csa4G637720Cucumber (Gy14) v2cgybcuB274
Csa4G637720Melon (DHL92) v3.6.1cumedB265
Csa4G637720Melon (DHL92) v3.6.1cumedB318
Csa4G637720Silver-seed gourdcarcuB0166
Csa4G637720Silver-seed gourdcarcuB0187
Csa4G637720Silver-seed gourdcarcuB0339
Csa4G637720Watermelon (97103) v2cuwmbB270
Csa4G637720Watermelon (97103) v2cuwmbB279
Csa4G637720Wax gourdcuwgoB399
Csa4G637720Cucumber (Chinese Long) v2cucuB026
Csa4G637720Cucumber (Chinese Long) v2cucuB147
Csa4G637720Cucumber (Gy14) v1cgycuB026
Csa4G637720Cucumber (Gy14) v1cgycuB163
Csa4G637720Cucurbita maxima (Rimu)cmacuB021
Csa4G637720Cucurbita maxima (Rimu)cmacuB474
Csa4G637720Cucurbita maxima (Rimu)cmacuB722
Csa4G637720Cucurbita moschata (Rifu)cmocuB012
Csa4G637720Cucurbita moschata (Rifu)cmocuB462
Csa4G637720Melon (DHL92) v3.5.1cumeB280
Csa4G637720Melon (DHL92) v3.5.1cumeB330
Csa4G637720Watermelon (Charleston Gray)cuwcgB279
Csa4G637720Watermelon (Charleston Gray)cuwcgB290
Csa4G637720Watermelon (Charleston Gray)cuwcgB310
Csa4G637720Watermelon (97103) v1cuwmB332
Csa4G637720Watermelon (97103) v1cuwmB349