Csa4G622220 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G622220
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 19941601 .. 19942850 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCTTCAATTTTTGGTGAAGTGGTTGTTCTTTGTATTAAGATTGACAGTTAATGGCTTTGTTGAGGTGGAGTGTTGGATAATTTGAAGAGGAACTGGAAGAAAGTGGCGATTATTAATATTGTTATACTTGTGTTTCTCATCATTGTTTACTCCATTTTGATGCTGCGCTTTTAAGAACAGCAAGAAGGAGAATCATTATCCTAGATGGAAATGAAGATATTGAATTTTGATTTTTGTTTTTAAGTTCTTTCATTGATGCTCTGTTTTTTGTTTTTTGTCTTGTGTTCTAGTTTCTTCAACTATATAGAGATGTATTGACTATTATTTGCTGTAATATATAAATAAAACTTAGGGACTTTTGTGCTCCTTTGTAATTTTAATAATTTAGACTTTGATTAATATTGAATTTTTGTATAATTAGATTCTGTTTTTTAGTATAAAGAAAAGGGACAGTGGTGTGTTTGGAATTATTCTTTGATTAGCTTAATTACATTTTTTTTTTACTAATAAAGGTGATTAATTTTTTGTTTTTTTAAGAGGCAATTATATATTTGTAATGTCTTAATTATTTAATAATTCATTGCCAAGGTGTCATTGTGTTCTATACATTTTGGTTGTATACAATATTCAAGCAAATAGCAACCAGTATTTGTACTTGTTGGTTTGTGGATCTCGTTAGGGTTAGACTTGGTTGCCTTGTGGGTATGGTCTGTCTACATAGCTTAAATGTGACTAATTCAATTATACACAAAAATTAAGTTTAGGTCCTACTTATCTTCCTTATTTACTGTGGTCAAATTGGATTATTTATAAACTTATCTTTCTTATTTACGGTATAAATTTCCTAGGGAGAAATAAAGTTGGGACTGATTTCATTTCAGCTGTTTTCTCCATTTGGGGTTATGGAAATGGCGTAATTTGTTTTGAATTATTTGATAGGAAGAGGGATTGAGGGAGAATTGCTGGGCATCTGATGGTAACTATTATGCAAAAGTAAGCCAGTTTATTTTTCCTTTTTTAGTTCAAATTTCCTCATTTCTTCCCATTTGTTGCATGTATATGGGTTGGAATTTGACCATTCCTTGTCCTGCATTTGGTCACATTTAGGTCTTGGATATGATGAAGATGAGGATGAAAGATTTTCCAATCCAACTGGCAGCCAGACCTCAACTGCAACTGTCTTTGGACAACATTTTGTATGGTTGTAGTTCAATTTCCAACTTTTATGTTTGTTGTGCTAGATAA

mRNA sequence

ATGCATCTTCAATTTTTGGTGAAGTGGTTGTTCTTTGTATTAAGATTGACAGTTAATGGCTTTGTTGAGGAAGAGGGATTGAGGGAGAATTGCTGGGCATCTGATGGTAACTATTATGCAAAAGTCTTGGATATGATGAAGATGAGGATGAAAGATTTTCCAATCCAACTGGCAGCCAGACCTCAACTGCAACTGTCTTTGGACAACATTTTGTATGGTTGTAGTTCAATTTCCAACTTTTATGTTTGTTGTGCTAGATAA

Coding sequence (CDS)

ATGCATCTTCAATTTTTGGTGAAGTGGTTGTTCTTTGTATTAAGATTGACAGTTAATGGCTTTGTTGAGGAAGAGGGATTGAGGGAGAATTGCTGGGCATCTGATGGTAACTATTATGCAAAAGTCTTGGATATGATGAAGATGAGGATGAAAGATTTTCCAATCCAACTGGCAGCCAGACCTCAACTGCAACTGTCTTTGGACAACATTTTGTATGGTTGTAGTTCAATTTCCAACTTTTATGTTTGTTGTGCTAGATAA

Protein sequence

MHLQFLVKWLFFVLRLTVNGFVEEEGLRENCWASDGNYYAKVLDMMKMRMKDFPIQLAARPQLQLSLDNILYGCSSISNFYVCCAR*
Homology
[Close]
BLAST of Csa4G622220 vs. TrEMBL
Match: A0A0A0L365_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622220 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.7e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 

Query: 1  MHLQFLVKWLFFVLRLTVNGFVEEEGLRENCWASDGNYYAKVLDMMKMRMKDFPIQLAAR 60
          MHLQFLVKWLFFVLRLTVNGFVEEEGLRENCWASDGNYYAKVLDMMKMRMKDFPIQLAAR
Sbjct: 1  MHLQFLVKWLFFVLRLTVNGFVEEEGLRENCWASDGNYYAKVLDMMKMRMKDFPIQLAAR 60

Query: 61 PQLQLSLDNILYGCSSISNFYVCCAR 87
          PQLQLSLDNILYGCSSISNFYVCCAR
Sbjct: 61 PQLQLSLDNILYGCSSISNFYVCCAR 86

[Close]
BLAST of Csa4G622220 vs. NCBI nr
Match: gi|700199854|gb|KGN55012.1| (hypothetical protein Csa_4G622220 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 3.9e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 

Query: 1  MHLQFLVKWLFFVLRLTVNGFVEEEGLRENCWASDGNYYAKVLDMMKMRMKDFPIQLAAR 60
          MHLQFLVKWLFFVLRLTVNGFVEEEGLRENCWASDGNYYAKVLDMMKMRMKDFPIQLAAR
Sbjct: 1  MHLQFLVKWLFFVLRLTVNGFVEEEGLRENCWASDGNYYAKVLDMMKMRMKDFPIQLAAR 60

Query: 61 PQLQLSLDNILYGCSSISNFYVCCAR 87
          PQLQLSLDNILYGCSSISNFYVCCAR
Sbjct: 61 PQLQLSLDNILYGCSSISNFYVCCAR 86

The following BLAST results are available for this feature:
BLAST of Csa4G622220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L365_CUCSA2.7e-43100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622220 PE=4 SV=1[more]
BLAST of Csa4G622220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199854|gb|KGN55012.1|3.9e-43100.00hypothetical protein Csa_4G622220 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU084442cucumber EST collection version 3.0transcribed_cluster
CU102895cucumber EST collection version 3.0transcribed_cluster
CU145953cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G622220.1Csa4G622220.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU145953CU145953transcribed_cluster
CU084442CU084442transcribed_cluster
CU102895CU102895transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G622220Watermelon (97103) v2cuwmbB279
Csa4G622220Wax gourdcuwgoB419
Csa4G622220Cucumber (Gy14) v1cgycuB042
Csa4G622220Cucumber (Gy14) v1cgycuB043
Csa4G622220Cucurbita maxima (Rimu)cmacuB025
Csa4G622220Cucurbita maxima (Rimu)cmacuB474
Csa4G622220Cucurbita moschata (Rifu)cmocuB016
Csa4G622220Cucurbita moschata (Rifu)cmocuB462
Csa4G622220Melon (DHL92) v3.5.1cumeB307
Csa4G622220Watermelon (Charleston Gray)cuwcgB279
Csa4G622220Watermelon (97103) v1cuwmB349
Csa4G622220Cucurbita pepo (Zucchini)cpecuB565
Csa4G622220Cucurbita pepo (Zucchini)cpecuB786
Csa4G622220Bottle gourd (USVL1VR-Ls)culsiB283
Csa4G622220Bottle gourd (USVL1VR-Ls)culsiB290
Csa4G622220Cucumber (Gy14) v2cgybcuB166
Csa4G622220Melon (DHL92) v3.6.1cumedB293
Csa4G622220Silver-seed gourdcarcuB0339
Csa4G622220Silver-seed gourdcarcuB0657