Csa4G617360 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G617360
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionAnkyrin repeat and zinc finger domain-containing protein
LocationChr4 : 19658421 .. 19658927 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTTCCTCTTTGAACCTCACTTTGCCGACTAATCCATTAGATTCGAACAGTCACACTCGACCTCTCCAAATGCCAGCGACTACTCCAAATGTTTCTCGAGGAAATCAACCTAAGGCCATGGAGACCAATCCCACCGCCTCCGTCGTCGTTGGCGACAATACTCCAGCCACCCTATCAAAGAAACGTAACCGTTCTATCTTTGACGTTTCAGCTGACTTCTTTGATTTCTGCAAACTCCTTCGTTCTCCACACTCATACACATCACAACCTAGTGGCAACATCAGGGACATCCCAAGCGTTGAAAACACAATCGATTCGGAGCAAAACTCTAGAGATTTCAAAGAAAGTTTCGTCGCCCATCGGTGGATCTACAACATATGCAAGGCTGAATTAAAGTCCCTCCTTGACCAGGGTTCGCATTTCAAATCCGACATTCACTGATATAATATAACTTTTTTTCTTGTTGATTTTGTTATCTGATATTTGAATTTCAGTTTTTTTTTTTT

mRNA sequence

ATGCCAGCGACTACTCCAAATGTTTCTCGAGGAAATCAACCTAAGGCCATGGAGACCAATCCCACCGCCTCCGTCGTCGTTGGCGACAATACTCCAGCCACCCTATCAAAGAAACGTAACCGTTCTATCTTTGACGTTTCAGCTGACTTCTTTGATTTCTGCAAACTCCTTCGTTCTCCACACTCATACACATCACAACCTAGTGGCAACATCAGGGACATCCCAAGCGTTGAAAACACAATCGATTCGGAGCAAAACTCTAGAGATTTCAAAGAAAGTTTCGTCGCCCATCGGTGGATCTACAACATATGCAAGGCTGAATTAAAGTCCCTCCTTGACCAGGGTTCGCATTTCAAATCCGACATTCACTGA

Coding sequence (CDS)

ATGCCAGCGACTACTCCAAATGTTTCTCGAGGAAATCAACCTAAGGCCATGGAGACCAATCCCACCGCCTCCGTCGTCGTTGGCGACAATACTCCAGCCACCCTATCAAAGAAACGTAACCGTTCTATCTTTGACGTTTCAGCTGACTTCTTTGATTTCTGCAAACTCCTTCGTTCTCCACACTCATACACATCACAACCTAGTGGCAACATCAGGGACATCCCAAGCGTTGAAAACACAATCGATTCGGAGCAAAACTCTAGAGATTTCAAAGAAAGTTTCGTCGCCCATCGGTGGATCTACAACATATGCAAGGCTGAATTAAAGTCCCTCCTTGACCAGGGTTCGCATTTCAAATCCGACATTCACTGA

Protein sequence

MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSQPSGNIRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH*
Homology
[Close]
BLAST of Csa4G617360 vs. TrEMBL
Match: A0A0A0L1Q2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G617360 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.1e-64
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1 

Query: 1   MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP 60
           MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP
Sbjct: 1   MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP 60

Query: 61  HSYTSQPSGNIRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS 120
           HSYTSQPSGNIRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS
Sbjct: 61  HSYTSQPSGNIRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS 120

Query: 121 DIH 124
           DIH
Sbjct: 121 DIH 123

[Close]
BLAST of Csa4G617360 vs. TrEMBL
Match: A0A0A0L7L2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G125000 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 6.0e-36
Identity = 80/107 (74.77%), Postives = 84/107 (78.50%), Query Frame = 1 

Query: 17  METNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSQPSGNIRDIPS 76
           MET P AS VV  NTP    +KRNRSIFDV ADFFD CKLLRSPHSYTS  SG+ RD PS
Sbjct: 1   METIPAASAVVVSNTPPIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSPTSGSNRDGPS 60

Query: 77  VENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
             NT+D EQNSRDFKES VAHRW  NICKAE +SLLDQ SHFKSDIH
Sbjct: 61  AVNTVDLEQNSRDFKESSVAHRWTCNICKAEFESLLDQRSHFKSDIH 107

[Close]
BLAST of Csa4G617360 vs. TrEMBL
Match: B9GPI4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s15080g PE=4 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 5.1e-11
Identity = 45/94 (47.87%), Postives = 53/94 (56.38%), Query Frame = 1 

Query: 31  TPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSQPSGNIR-DIPSVENTIDSEQNSRD 90
           T +T  +KR+RSIFDV  DFFD C+LL SP S  S  S ++  +IPS   T+D       
Sbjct: 10  TNSTSQEKRHRSIFDVPTDFFDACRLL-SPSSSPSPASTSVAPEIPSPIETLDEVDTISK 69

Query: 91  FKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
                   RW  N CKAE  SL DQ  HFKSDIH
Sbjct: 70  NGVEVTIPRWTCNTCKAEFDSLQDQRFHFKSDIH 102

[Close]
BLAST of Csa4G617360 vs. TrEMBL
Match: U5GSZ2_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0002s15080g PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.1e-11
Identity = 45/94 (47.87%), Postives = 53/94 (56.38%), Query Frame = 1 

Query: 31  TPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSQPSGNIR-DIPSVENTIDSEQNSRD 90
           T +T  +KR+RSIFDV  DFFD C+LL SP S  S  S ++  +IPS   T+D       
Sbjct: 10  TNSTSQEKRHRSIFDVPTDFFDACRLL-SPSSSPSPASTSVAPEIPSPIETLDEVDTISK 69

Query: 91  FKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
                   RW  N CKAE  SL DQ  HFKSDIH
Sbjct: 70  NGVEVTIPRWTCNTCKAEFDSLQDQRFHFKSDIH 102

[Close]
BLAST of Csa4G617360 vs. TrEMBL
Match: I1L6T5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G267800 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.7e-11
Identity = 42/99 (42.42%), Postives = 57/99 (57.58%), Query Frame = 1 

Query: 30  NTPATLSKKRNRSIFDVSADFFDFCKLLRSPHS-----YTSQPSGNIRDIPSVENTIDSE 89
           NT  +L +KR+RSIF+V  +FFD C+LL SPHS     Y+   +  +    + +  +D+ 
Sbjct: 12  NTTTSLQEKRHRSIFEVPPNFFDCCRLLPSPHSSVSDHYSVSRTQTLEPSSNDDVVLDAP 71

Query: 90  QNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
           QN+        A RW  N CK +  SL DQ SHFKSDIH
Sbjct: 72  QNA-----VVSAPRWTCNTCKTQFDSLQDQRSHFKSDIH 105

[Close]
BLAST of Csa4G617360 vs. TAIR10
Match: AT1G01930.1 (AT1G01930.1 zinc finger protein-related)

HSP 1 Score: 62.0 bits (149), Expect = 3.0e-10
Identity = 38/88 (43.18%), Postives = 44/88 (50.00%), Query Frame = 1 

Query: 38  KRNRSIFDVSADFFDFCKLLRSPHSYTSQPSGNIRDIPSVENTIDSEQNSRD--FKESFV 97
           K+ RSIFD++ADFFD C+L        S PS   +       T D E+   D   K+  +
Sbjct: 18  KQPRSIFDLTADFFDSCRL--------SNPS-ETQSAFGPPKTFDPEEAEEDKSSKDGVI 77

Query: 98  AHRWIYNICKAELKSLLDQGSHFKSDIH 124
             RW  N CK E  SL DQ  HFKSDIH
Sbjct: 78  LDRWTCNTCKIEFLSLQDQRYHFKSDIH 96

[Close]
BLAST of Csa4G617360 vs. NCBI nr
Match: gi|700199811|gb|KGN54969.1| (hypothetical protein Csa_4G617360 [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 1.5e-64
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1 

Query: 1   MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP 60
           MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP
Sbjct: 1   MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP 60

Query: 61  HSYTSQPSGNIRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS 120
           HSYTSQPSGNIRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS
Sbjct: 61  HSYTSQPSGNIRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS 120

Query: 121 DIH 124
           DIH
Sbjct: 121 DIH 123

[Close]
BLAST of Csa4G617360 vs. NCBI nr
Match: gi|659075433|ref|XP_008438141.1| (PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 4.9e-39
Identity = 83/107 (77.57%), Postives = 88/107 (82.24%), Query Frame = 1 

Query: 17  METNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSQPSGNIRDIPS 76
           METNP AS V+  NTPA   +KRNRSIFDV ADFFD CKLLRSPHSYTS  SG+ RD PS
Sbjct: 1   METNPAASAVIVSNTPAIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSPTSGSNRDSPS 60

Query: 77  VENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
            ENT+DSEQNSRDFKES VAHRW  NICKAE +SLLDQ SHFKSDIH
Sbjct: 61  AENTVDSEQNSRDFKESSVAHRWTCNICKAEFESLLDQRSHFKSDIH 107

[Close]
BLAST of Csa4G617360 vs. NCBI nr
Match: gi|778677403|ref|XP_011650787.1| (PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 8.7e-36
Identity = 80/107 (74.77%), Postives = 84/107 (78.50%), Query Frame = 1 

Query: 17  METNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSQPSGNIRDIPS 76
           MET P AS VV  NTP    +KRNRSIFDV ADFFD CKLLRSPHSYTS  SG+ RD PS
Sbjct: 1   METIPAASAVVVSNTPPIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSPTSGSNRDGPS 60

Query: 77  VENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
             NT+D EQNSRDFKES VAHRW  NICKAE +SLLDQ SHFKSDIH
Sbjct: 61  AVNTVDLEQNSRDFKESSVAHRWTCNICKAEFESLLDQRSHFKSDIH 107

[Close]
BLAST of Csa4G617360 vs. NCBI nr
Match: gi|645253689|ref|XP_008232691.1| (PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Prunus mume])

HSP 1 Score: 75.9 bits (185), Expect = 5.7e-11
Identity = 45/106 (42.45%), Postives = 55/106 (51.89%), Query Frame = 1 

Query: 21  PTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSQPSGNIRDIPSVENT 80
           P  +     +  A    KR RSIFDV A+FFD C+LL+S    T   S       +VE  
Sbjct: 30  PRTATTTATHATAKTQVKRPRSIFDVPANFFDSCELLQSSSLSTVSTSETSTHNSAVETL 89

Query: 81  IDSEQNSRD---FKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
            DSE    +   F+ +  A RW  N CKAE  SL DQ +HFKSDIH
Sbjct: 90  DDSEPERNEENRFQNAVGAPRWTCNTCKAEFDSLEDQRAHFKSDIH 135

[Close]
BLAST of Csa4G617360 vs. NCBI nr
Match: gi|743804997|ref|XP_011017509.1| (PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 isoform X1 [Populus euphratica])

HSP 1 Score: 75.5 bits (184), Expect = 7.4e-11
Identity = 45/94 (47.87%), Postives = 53/94 (56.38%), Query Frame = 1 

Query: 31  TPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSQPSGNIR-DIPSVENTIDSEQNSRD 90
           T +T  +KR+RSIFDV  DFFD C+LL SP S  S  S ++  +IPS   T+D       
Sbjct: 10  TNSTSQEKRHRSIFDVPTDFFDACRLL-SPSSSPSPASTSVAPEIPSPIETLDEVDTISK 69

Query: 91  FKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
                   RW  N CKAE  SL DQ  HFKSDIH
Sbjct: 70  NGVEVTIPRWTCNTCKAEFDSLQDQRFHFKSDIH 102

The following BLAST results are available for this feature:
BLAST of Csa4G617360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1Q2_CUCSA1.1e-64100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G617360 PE=4 SV=1[more]
A0A0A0L7L2_CUCSA6.0e-3674.77Uncharacterized protein OS=Cucumis sativus GN=Csa_3G125000 PE=4 SV=1[more]
B9GPI4_POPTR5.1e-1147.87Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s15080g PE=4 SV=2[more]
U5GSZ2_POPTR5.1e-1147.87Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0002s15080g PE=4 SV=1[more]
I1L6T5_SOYBN6.7e-1142.42Uncharacterized protein OS=Glycine max GN=GLYMA_09G267800 PE=4 SV=1[more]
BLAST of Csa4G617360 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G01930.13.0e-1043.18 zinc finger protein-related[more]
BLAST of Csa4G617360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199811|gb|KGN54969.1|1.5e-64100.00hypothetical protein Csa_4G617360 [Cucumis sativus][more]
gi|659075433|ref|XP_008438141.1|4.9e-3977.57PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis m... [more]
gi|778677403|ref|XP_011650787.1|8.7e-3674.77PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis s... [more]
gi|645253689|ref|XP_008232691.1|5.7e-1142.45PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Prunus mu... [more]
gi|743804997|ref|XP_011017509.1|7.4e-1147.87PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 isoform X1... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G617360.1Csa4G617360.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G617360CSPI04G21880Wild cucumber (PI 183967)cpicuB181
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G617360Cucumber (Chinese Long) v2cucuB136
Csa4G617360Cucumber (Gy14) v1cgycuB042
Csa4G617360Cucurbita maxima (Rimu)cmacuB025
Csa4G617360Cucurbita maxima (Rimu)cmacuB467
Csa4G617360Cucurbita moschata (Rifu)cmocuB016
Csa4G617360Cucurbita moschata (Rifu)cmocuB455
Csa4G617360Melon (DHL92) v3.5.1cumeB268
Csa4G617360Watermelon (Charleston Gray)cuwcgB279
Csa4G617360Watermelon (97103) v1cuwmB349
Csa4G617360Cucurbita pepo (Zucchini)cpecuB565
Csa4G617360Cucurbita pepo (Zucchini)cpecuB573
Csa4G617360Cucurbita pepo (Zucchini)cpecuB786
Csa4G617360Bottle gourd (USVL1VR-Ls)culsiB283
Csa4G617360Cucumber (Gy14) v2cgybcuB166
Csa4G617360Melon (DHL92) v3.6.1cumedB287
Csa4G617360Silver-seed gourdcarcuB0660
Csa4G617360Silver-seed gourdcarcuB1060
Csa4G617360Watermelon (97103) v2cuwmbB279
Csa4G617360Wax gourdcuwgoB419