CSPI04G21880 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G21880
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Ankyrin repeat and zinc finger domain-containing protein 1
Location	Chr4 : 20378869 .. 20379605 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTTCTCTAAATCGTTTTCCTCTTTGAACCTCACTTTGCCGACTAATCCATTAGATTCGAACAGTCACACTCGACCTCTCCAAATGCCAGCGACTACTCCAAATGTTTCTCGAGGAAATCAACCCAAGGCCATGGAGACCAATCCCACCGCCTCCGTCGTCGTTGGCGACAATACTCCAGCCACCCTATCAAAGAAACGTAACCGTTCTATCTTTGACGTTTCAGCTGACTTCTTTGATTTCTGTAAACTCCTTCGTTCTCCACACTCATACACATCACCAACTAGTGGCGACATCAGGGACATCCCAAGCGTTGAAAACACAATCGATTCGGAGCAAAACTCTAGAGATTTCAAAGAAAGTTTCGTCGCCCATCGGTGGATCTACAACATATGCAAGGCTGAATTAAAGTCCCTCCTTGACCAGGGTTCGCATTTCAAATCCGACATTCACTGATACAATATAACTTTTTTTTTTGTTGATTTTGTTATCTGATATTTGAATTTCAGTTTTTTTTTTCTTTTTTGCCCCAATTTAACTAGCTGACTGAGTAGAATGTCTCAGTTATTGAATTATCATGTCAAGCGTCCATTTTTGTTTAAATGTTTATAGACATCAAAGTTGAAATTTAGTTGTTGACATGCTTTTGATGAACTGAATGGTTTCTTAATTTTTATGTTCTATGTGAAAGATGGAGAGAGTTAGACACATTATATGTGGTCTAGGGAAGTGTAATA

mRNA sequence

ATGCCAGCGACTACTCCAAATGTTTCTCGAGGAAATCAACCCAAGGCCATGGAGACCAATCCCACCGCCTCCGTCGTCGTTGGCGACAATACTCCAGCCACCCTATCAAAGAAACGTAACCGTTCTATCTTTGACGTTTCAGCTGACTTCTTTGATTTCTGTAAACTCCTTCGTTCTCCACACTCATACACATCACCAACTAGTGGCGACATCAGGGACATCCCAAGCGTTGAAAACACAATCGATTCGGAGCAAAACTCTAGAGATTTCAAAGAAAGTTTCGTCGCCCATCGGTGGATCTACAACATATGCAAGGCTGAATTAAAGTCCCTCCTTGACCAGGGTTCGCATTTCAAATCCGACATTCACTGA

Coding sequence (CDS)

ATGCCAGCGACTACTCCAAATGTTTCTCGAGGAAATCAACCCAAGGCCATGGAGACCAATCCCACCGCCTCCGTCGTCGTTGGCGACAATACTCCAGCCACCCTATCAAAGAAACGTAACCGTTCTATCTTTGACGTTTCAGCTGACTTCTTTGATTTCTGTAAACTCCTTCGTTCTCCACACTCATACACATCACCAACTAGTGGCGACATCAGGGACATCCCAAGCGTTGAAAACACAATCGATTCGGAGCAAAACTCTAGAGATTTCAAAGAAAGTTTCGTCGCCCATCGGTGGATCTACAACATATGCAAGGCTGAATTAAAGTCCCTCCTTGACCAGGGTTCGCATTTCAAATCCGACATTCACTGA

Homology

[Close]

BLAST of CSPI04G21880 vs. TrEMBL
Match: A0A0A0L1Q2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G617360 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 4.9e-62
Identity = 120/123 (97.56%), Postives = 121/123 (98.37%), Query Frame = 1


Query: 1   MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP 60
           MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP
Sbjct: 1   MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP 60

Query: 61  HSYTSPTSGDIRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS 120
           HSYTS  SG+IRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS
Sbjct: 61  HSYTSQPSGNIRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS 120

Query: 121 DIH 124
           DIH
Sbjct: 121 DIH 123

[Close]

BLAST of CSPI04G21880 vs. TrEMBL
Match: A0A0A0L7L2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G125000 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.9e-37
Identity = 82/107 (76.64%), Postives = 85/107 (79.44%), Query Frame = 1


Query: 17  METNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSPTSGDIRDIPS 76
           MET P AS VV  NTP    +KRNRSIFDV ADFFD CKLLRSPHSYTSPTSG  RD PS
Sbjct: 1   METIPAASAVVVSNTPPIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSPTSGSNRDGPS 60

Query: 77  VENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
             NT+D EQNSRDFKES VAHRW  NICKAE +SLLDQ SHFKSDIH
Sbjct: 61  AVNTVDLEQNSRDFKESSVAHRWTCNICKAEFESLLDQRSHFKSDIH 107

[Close]

BLAST of CSPI04G21880 vs. TrEMBL
Match: B9GPI4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s15080g PE=4 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 2.7e-12
Identity = 46/94 (48.94%), Postives = 53/94 (56.38%), Query Frame = 1


Query: 31  TPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSPTSGDIR-DIPSVENTIDSEQNSRD 90
           T +T  +KR+RSIFDV  DFFD C+LL SP S  SP S  +  +IPS   T+D       
Sbjct: 10  TNSTSQEKRHRSIFDVPTDFFDACRLL-SPSSSPSPASTSVAPEIPSPIETLDEVDTISK 69

Query: 91  FKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
                   RW  N CKAE  SL DQ  HFKSDIH
Sbjct: 70  NGVEVTIPRWTCNTCKAEFDSLQDQRFHFKSDIH 102

[Close]

BLAST of CSPI04G21880 vs. TrEMBL
Match: U5GSZ2_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0002s15080g PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.7e-12
Identity = 46/94 (48.94%), Postives = 53/94 (56.38%), Query Frame = 1


Query: 31  TPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSPTSGDIR-DIPSVENTIDSEQNSRD 90
           T +T  +KR+RSIFDV  DFFD C+LL SP S  SP S  +  +IPS   T+D       
Sbjct: 10  TNSTSQEKRHRSIFDVPTDFFDACRLL-SPSSSPSPASTSVAPEIPSPIETLDEVDTISK 69

Query: 91  FKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
                   RW  N CKAE  SL DQ  HFKSDIH
Sbjct: 70  NGVEVTIPRWTCNTCKAEFDSLQDQRFHFKSDIH 102

[Close]

BLAST of CSPI04G21880 vs. TrEMBL
Match: I1L6T5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G267800 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.9e-11
Identity = 42/99 (42.42%), Postives = 57/99 (57.58%), Query Frame = 1


Query: 30  NTPATLSKKRNRSIFDVSADFFDFCKLLRSPHS-----YTSPTSGDIRDIPSVENTIDSE 89
           NT  +L +KR+RSIF+V  +FFD C+LL SPHS     Y+   +  +    + +  +D+ 
Sbjct: 12  NTTTSLQEKRHRSIFEVPPNFFDCCRLLPSPHSSVSDHYSVSRTQTLEPSSNDDVVLDAP 71

Query: 90  QNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
           QN+        A RW  N CK +  SL DQ SHFKSDIH
Sbjct: 72  QNA-----VVSAPRWTCNTCKTQFDSLQDQRSHFKSDIH 105

[Close]

BLAST of CSPI04G21880 vs. TAIR10
Match: AT1G01930.1 (AT1G01930.1 zinc finger protein-related)

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-10
Identity = 39/88 (44.32%), Postives = 46/88 (52.27%), Query Frame = 1


Query: 38  KRNRSIFDVSADFFDFCKLLRSPHSYTSPTSGDIRDIPSVENTIDSEQNSRD--FKESFV 97
           K+ RSIFD++ADFFD C+L  S  S T    G          T D E+   D   K+  +
Sbjct: 18  KQPRSIFDLTADFFDSCRL--SNPSETQSAFGP-------PKTFDPEEAEEDKSSKDGVI 77

Query: 98  AHRWIYNICKAELKSLLDQGSHFKSDIH 124
             RW  N CK E  SL DQ  HFKSDIH
Sbjct: 78  LDRWTCNTCKIEFLSLQDQRYHFKSDIH 96

[Close]

BLAST of CSPI04G21880 vs. NCBI nr
Match: gi|700199811|gb|KGN54969.1| (hypothetical protein Csa_4G617360 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 7.0e-62
Identity = 120/123 (97.56%), Postives = 121/123 (98.37%), Query Frame = 1


Query: 1   MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP 60
           MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP
Sbjct: 1   MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP 60

Query: 61  HSYTSPTSGDIRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS 120
           HSYTS  SG+IRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS
Sbjct: 61  HSYTSQPSGNIRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS 120

Query: 121 DIH 124
           DIH
Sbjct: 121 DIH 123

[Close]

BLAST of CSPI04G21880 vs. NCBI nr
Match: gi|659075433|ref|XP_008438141.1| (PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis melo])

HSP 1 Score: 174.1 bits (440), Expect = 1.5e-40
Identity = 85/107 (79.44%), Postives = 89/107 (83.18%), Query Frame = 1


Query: 17  METNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSPTSGDIRDIPS 76
           METNP AS V+  NTPA   +KRNRSIFDV ADFFD CKLLRSPHSYTSPTSG  RD PS
Sbjct: 1   METNPAASAVIVSNTPAIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSPTSGSNRDSPS 60

Query: 77  VENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
            ENT+DSEQNSRDFKES VAHRW  NICKAE +SLLDQ SHFKSDIH
Sbjct: 61  AENTVDSEQNSRDFKESSVAHRWTCNICKAEFESLLDQRSHFKSDIH 107

[Close]

BLAST of CSPI04G21880 vs. NCBI nr
Match: gi|778677403|ref|XP_011650787.1| (PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 2.7e-37
Identity = 82/107 (76.64%), Postives = 85/107 (79.44%), Query Frame = 1


Query: 17  METNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSPTSGDIRDIPS 76
           MET P AS VV  NTP    +KRNRSIFDV ADFFD CKLLRSPHSYTSPTSG  RD PS
Sbjct: 1   METIPAASAVVVSNTPPIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSPTSGSNRDGPS 60

Query: 77  VENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
             NT+D EQNSRDFKES VAHRW  NICKAE +SLLDQ SHFKSDIH
Sbjct: 61  AVNTVDLEQNSRDFKESSVAHRWTCNICKAEFESLLDQRSHFKSDIH 107

[Close]

BLAST of CSPI04G21880 vs. NCBI nr
Match: gi|743804997|ref|XP_011017509.1| (PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 isoform X1 [Populus euphratica])

HSP 1 Score: 79.7 bits (195), Expect = 3.9e-12
Identity = 46/94 (48.94%), Postives = 53/94 (56.38%), Query Frame = 1


Query: 31  TPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSPTSGDIR-DIPSVENTIDSEQNSRD 90
           T +T  +KR+RSIFDV  DFFD C+LL SP S  SP S  +  +IPS   T+D       
Sbjct: 10  TNSTSQEKRHRSIFDVPTDFFDACRLL-SPSSSPSPASTSVAPEIPSPIETLDEVDTISK 69

Query: 91  FKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
                   RW  N CKAE  SL DQ  HFKSDIH
Sbjct: 70  NGVEVTIPRWTCNTCKAEFDSLQDQRFHFKSDIH 102

[Close]

BLAST of CSPI04G21880 vs. NCBI nr
Match: gi|566158127|ref|XP_006386575.1| (zinc finger family protein [Populus trichocarpa])

HSP 1 Score: 79.7 bits (195), Expect = 3.9e-12
Identity = 46/94 (48.94%), Postives = 53/94 (56.38%), Query Frame = 1


Query: 31  TPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSPTSGDIR-DIPSVENTIDSEQNSRD 90
           T +T  +KR+RSIFDV  DFFD C+LL SP S  SP S  +  +IPS   T+D       
Sbjct: 10  TNSTSQEKRHRSIFDVPTDFFDACRLL-SPSSSPSPASTSVAPEIPSPIETLDEVDTISK 69

Query: 91  FKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
                   RW  N CKAE  SL DQ  HFKSDIH
Sbjct: 70  NGVEVTIPRWTCNTCKAEFDSLQDQRFHFKSDIH 102

The following BLAST results are available for this feature:

BLAST of CSPI04G21880 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G21880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1Q2_CUCSA	4.9e-62	97.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G617360 PE=4 SV=1	[more]
A0A0A0L7L2_CUCSA	1.9e-37	76.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G125000 PE=4 SV=1	[more]
B9GPI4_POPTR	2.7e-12	48.94	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s15080g PE=4 SV=2	[more]
U5GSZ2_POPTR	2.7e-12	48.94	Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0002s15080g PE=4 SV=1	[more]
I1L6T5_SOYBN	3.9e-11	42.42	Uncharacterized protein OS=Glycine max GN=GLYMA_09G267800 PE=4 SV=1	[more]

BLAST of CSPI04G21880 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G01930.1	1.0e-10	44.32	zinc finger protein-related	[more]

BLAST of CSPI04G21880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199811\|gb\|KGN54969.1\|	7.0e-62	97.56	hypothetical protein Csa_4G617360 [Cucumis sativus]	[more]
gi\|659075433\|ref\|XP_008438141.1\|	1.5e-40	79.44	PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis m...	[more]
gi\|778677403\|ref\|XP_011650787.1\|	2.7e-37	76.64	PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis s...	[more]
gi\|743804997\|ref\|XP_011017509.1\|	3.9e-12	48.94	PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 isoform X1...	[more]
gi\|566158127\|ref\|XP_006386575.1\|	3.9e-12	48.94	zinc finger family protein [Populus trichocarpa]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G21880.1	CSPI04G21880.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G21880	Csa4G617360	Cucumber (Chinese Long) v2	cpicuB181
CSPI04G21880	CsaV3_4G032230	Cucumber (Chinese Long) v3	cpicucB212

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G21880	Cucumber (Chinese Long) v3	cpicucB226
CSPI04G21880	Watermelon (97103) v2	cpiwmbB286
CSPI04G21880	Wax gourd	cpiwgoB421
CSPI04G21880	Wild cucumber (PI 183967)	cpicpiB150
CSPI04G21880	Cucumber (Gy14) v1	cgycpiB043
CSPI04G21880	Cucurbita maxima (Rimu)	cmacpiB024
CSPI04G21880	Cucurbita maxima (Rimu)	cmacpiB469
CSPI04G21880	Cucurbita moschata (Rifu)	cmocpiB015
CSPI04G21880	Cucurbita moschata (Rifu)	cmocpiB459
CSPI04G21880	Cucumber (Chinese Long) v2	cpicuB189
CSPI04G21880	Melon (DHL92) v3.5.1	cpimeB297
CSPI04G21880	Watermelon (Charleston Gray)	cpiwcgB289
CSPI04G21880	Watermelon (97103) v1	cpiwmB356
CSPI04G21880	Cucurbita pepo (Zucchini)	cpecpiB567
CSPI04G21880	Cucurbita pepo (Zucchini)	cpecpiB574
CSPI04G21880	Cucurbita pepo (Zucchini)	cpecpiB788
CSPI04G21880	Bottle gourd (USVL1VR-Ls)	cpilsiB283
CSPI04G21880	Melon (DHL92) v3.6.1	cpimedB291
CSPI04G21880	Cucumber (Gy14) v2	cgybcpiB169
CSPI04G21880	Silver-seed gourd	carcpiB0669
CSPI04G21880	Silver-seed gourd	carcpiB1082