Csa4G615740 (gene) Cucumber (Chinese Long) v2

NameCsa4G615740
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPectinesterase/pectinesterase inhibitor; contains IPR006501 (Pectinesterase inhibitor)
LocationChr4 : 19530223 .. 19531025 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAACCCTCTTCTTCCCTCCCCGTTCGTTTTTGTTTCTCTCTTATTCCTTCTCTCATGGCTAACCCACTTCGCCAAAGTAACACGATACCAAGATTTGTGCAAGCACAACCCTACAAAATGGGCTTGAGCAGGGGTGTCGGAATAGAGGCAAAAAAAATCGCAGGATTCCTGGGGAGGTTGATGAACAAAAAGTGGATGAAGGAGAGAAATAGGGTCGTCTAAGCTGTGTGGAGGTGTTTGAAGCCGCCATTGATGAGCTTCACATGTCGTTTGGGGTTCTTAGAAGATTGAGTAGGAGGAATTTTGACACACAAATGGGGTATCTAACGACGTGGGTCAGCATTGCGCTAACGAATGAAGATATTTGCGTTAAAGGATTTGAAGGTGGAAGGGAAAAAATAGTGAATTTGCTAAGAAATGGAATGGTGAAAGTTGGTTATATTATGAGTAATGCACTTGCTTTGGTTAATAAATTGGTTGTCTCTATTTTTGAAATTGGACGGAGATTTGGAATTTCTCTTGAATTTGATGTGGAGATTGGATGTACATGTTATAAGATTATATAACTTGTAATTGTACTAATTGAAAGAATTAAAACTACATACTATTTTTTAAATGAAAATTACGTTTGGGGTTCTTTTTTTTTGTTGTGTGTGTTGAAATGAAATTATGACTGTTAATTGGGCTAGCTCCTAAAGGAGTCCCTCTAAATTTCATGTGTATCTTCCGTGGAATTCAGATTATAATGATGATGTTTTGGACAAGATAGGTTTCTTCTTTGTTGCATATGGAGATTGA

mRNA sequence

ATGGCTAACCCTCTTCTTCCCTCCCCGTTCGTTTTTGTTTCTCTCTTATTCCTTCTCTCATGGCTAACCCACTTCGCCAAAGTGTTTGAAGCCGCCATTGATGAGCTTCACATGTCGTTTGGGGTTCTTAGAAGATTGAGTAGGAGGAATTTTGACACACAAATGGGGTATCTAACGACGTGGGTCAGCATTGCGCTAACGAATGAAGATATTTGCGTTAAAGGATTTGAAGGTGGAAGGGAAAAAATAGTGAATTTGCTAAGAAATGGAATGGTGAAAGTTGGTTATATTATGAGTAATGCACTTGCTTTGGTTAATAAATTGGTTGTCTCTATTTTTGAAATTGGACGGAGATTTGGAATTTCTCTTGAATTTGATGTGGAGATTGGATATTATAATGATGATGTTTTGGACAAGATAGGTTTCTTCTTTGTTGCATATGGAGATTGA

Coding sequence (CDS)

ATGGCTAACCCTCTTCTTCCCTCCCCGTTCGTTTTTGTTTCTCTCTTATTCCTTCTCTCATGGCTAACCCACTTCGCCAAAGTGTTTGAAGCCGCCATTGATGAGCTTCACATGTCGTTTGGGGTTCTTAGAAGATTGAGTAGGAGGAATTTTGACACACAAATGGGGTATCTAACGACGTGGGTCAGCATTGCGCTAACGAATGAAGATATTTGCGTTAAAGGATTTGAAGGTGGAAGGGAAAAAATAGTGAATTTGCTAAGAAATGGAATGGTGAAAGTTGGTTATATTATGAGTAATGCACTTGCTTTGGTTAATAAATTGGTTGTCTCTATTTTTGAAATTGGACGGAGATTTGGAATTTCTCTTGAATTTGATGTGGAGATTGGATATTATAATGATGATGTTTTGGACAAGATAGGTTTCTTCTTTGTTGCATATGGAGATTGA

Protein sequence

MANPLLPSPFVFVSLLFLLSWLTHFAKVFEAAIDELHMSFGVLRRLSRRNFDTQMGYLTTWVSIALTNEDICVKGFEGGREKIVNLLRNGMVKVGYIMSNALALVNKLVVSIFEIGRRFGISLEFDVEIGYYNDDVLDKIGFFFVAYGD*
BLAST of Csa4G615740 vs. TrEMBL
Match: A0A0A0L1N4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G615740 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 3.5e-78
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1

Query: 1   MANPLLPSPFVFVSLLFLLSWLTHFAKVFEAAIDELHMSFGVLRRLSRRNFDTQMGYLTT 60
           MANPLLPSPFVFVSLLFLLSWLTHFAKVFEAAIDELHMSFGVLRRLSRRNFDTQMGYLTT
Sbjct: 1   MANPLLPSPFVFVSLLFLLSWLTHFAKVFEAAIDELHMSFGVLRRLSRRNFDTQMGYLTT 60

Query: 61  WVSIALTNEDICVKGFEGGREKIVNLLRNGMVKVGYIMSNALALVNKLVVSIFEIGRRFG 120
           WVSIALTNEDICVKGFEGGREKIVNLLRNGMVKVGYIMSNALALVNKLVVSIFEIGRRFG
Sbjct: 61  WVSIALTNEDICVKGFEGGREKIVNLLRNGMVKVGYIMSNALALVNKLVVSIFEIGRRFG 120

Query: 121 ISLEFDVEIGYYNDDVLDKIGFFFVAYGD 150
           ISLEFDVEIGYYNDDVLDKIGFFFVAYGD
Sbjct: 121 ISLEFDVEIGYYNDDVLDKIGFFFVAYGD 149

BLAST of Csa4G615740 vs. TrEMBL
Match: A0A0A0KAX0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G397050 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.3e-28
Identity = 68/88 (77.27%), Postives = 73/88 (82.95%), Query Frame = 1

Query: 27  KVFEAAIDELHMSFGVLRRLSRRNFDTQMGYLTTWVSIALTNEDICVKGFEGGREKIVNL 86
           +VFEAAIDELH S GVLRRLSRRNFD QMG LTTWVS ALT+ED CV+GFEG   K+V L
Sbjct: 105 EVFEAAIDELHRSLGVLRRLSRRNFDAQMGDLTTWVSAALTDEDTCVEGFEGEEGKVVTL 164

Query: 87  LRNGMVKVGYIMSNALALVNKLVVSIFE 115
           LRN +VKVGYI SNALALVNKL  S FE
Sbjct: 165 LRNRVVKVGYITSNALALVNKLAASSFE 192

BLAST of Csa4G615740 vs. TrEMBL
Match: I3SDE4_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.1e-19
Identity = 51/90 (56.67%), Postives = 64/90 (71.11%), Query Frame = 1

Query: 22  LTHFAKVFEAAIDELHMSFGVLRRLSRRNFDTQMGYLTTWVSIALTNEDICVKGFEGGRE 81
           L+   + F  A+DELH S GVLRRLS++ F TQMG L TW+S ALT+ED C+ GFEG  E
Sbjct: 104 LSDCVECFADALDELHRSLGVLRRLSKKTFSTQMGDLNTWISAALTDEDTCIDGFEGKTE 163

Query: 82  KIVNLLRNGMVKVGYIMSNALALVNKLVVS 112
           + + LL+N +  V YI SNALALVNKL  +
Sbjct: 164 RQIKLLQNRVQNVSYITSNALALVNKLATT 193

BLAST of Csa4G615740 vs. TrEMBL
Match: G7LBZ5_MEDTR (Plant invertase/pectin methylesterase inhibitor OS=Medicago truncatula GN=MTR_7g108790 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.1e-19
Identity = 52/87 (59.77%), Postives = 62/87 (71.26%), Query Frame = 1

Query: 22  LTHFAKVFEAAIDELHMSFGVLRRLSRRNFDTQMGYLTTWVSIALTNEDICVKGFEGGRE 81
           L+   + F  A+DELH S GVLR+LS+  F TQMG L TW+S ALTNED C+ GFEG  E
Sbjct: 101 LSDCIETFGYAVDELHKSLGVLRKLSKNTFSTQMGDLNTWISAALTNEDTCLDGFEGKTE 160

Query: 82  KIVNLLRNGMVKVGYIMSNALALVNKL 109
           K + LL+N +  V YI SNALALVNKL
Sbjct: 161 KKIKLLQNKVKNVSYITSNALALVNKL 187

BLAST of Csa4G615740 vs. TrEMBL
Match: V7D1N5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G207300g PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.6e-19
Identity = 52/90 (57.78%), Postives = 65/90 (72.22%), Query Frame = 1

Query: 22  LTHFAKVFEAAIDELHMSFGVLRRLSRRNFDTQMGYLTTWVSIALTNEDICVKGFEGGRE 81
           L+  A+ F  A+DELH S GVLRRLS+  F TQMG L TW+S ALT+E+ C++GFEG  E
Sbjct: 100 LSDCAESFAYALDELHRSLGVLRRLSKTTFSTQMGDLNTWISAALTDEETCLEGFEGENE 159

Query: 82  KIVNLLRNGMVKVGYIMSNALALVNKLVVS 112
           K V +L+N +  V YI SNALALVNKL  +
Sbjct: 160 KHVKVLQNRVQNVSYITSNALALVNKLATT 189

BLAST of Csa4G615740 vs. TAIR10
Match: AT2G47670.1 (AT2G47670.1 Plant invertase/pectin methylesterase inhibitor superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-10
Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = 1

Query: 22  LTHFAKVFEAAIDELHMSFGVLRRLSRRNFDTQMGYLTTWVSIALTNEDICVKGFE--GG 81
           L+   ++F  ++D L+ S  VLR L+   F  Q+  L TW+S ALT++D C+ GFE    
Sbjct: 115 LSDCRELFVDSLDNLYKSLAVLRTLNADEFQRQISDLATWLSAALTDDDTCLDGFEETSS 174

Query: 82  REKIVNLLRNGMVKVGYIMSNALALVNKL 109
           R + V ++R    K   + SNALAL+ KL
Sbjct: 175 RTRTVRMVRRKATKCMRLCSNALALLKKL 203

BLAST of Csa4G615740 vs. TAIR10
Match: AT3G62820.1 (AT3G62820.1 Plant invertase/pectin methylesterase inhibitor superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-10
Identity = 34/93 (36.56%), Postives = 51/93 (54.84%), Query Frame = 1

Query: 22  LTHFAKVFEAAIDELHMSFGVLRRLSRRNFDTQMGYLTTWVSIALTNEDICVKGFEGGRE 81
           L+   ++ + ++D LH S  VLR L    F  QM  L TW+S +LT++D C+ GFE    
Sbjct: 100 LSDCRELLQDSLDSLHKSLAVLRTLRASEFQQQMSDLATWLSSSLTDKDTCLDGFEKTST 159

Query: 82  K---IVNLLRNGMVKVGYIMSNALALVNKLVVS 112
           +    V ++R  +    Y+ SN+LAL+NKL  +
Sbjct: 160 RSSSTVRMIRKRVTTSMYLSSNSLALLNKLAAN 192

BLAST of Csa4G615740 vs. TAIR10
Match: AT5G20740.1 (AT5G20740.1 Plant invertase/pectin methylesterase inhibitor superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 8.9e-09
Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = 1

Query: 32  AIDELHMSFGVLRRL-----SRRNFDTQMGYLTTWVSIALTNEDICVKGFEGGRE-KIVN 91
           ++DEL  + GVL+ L     S + F  QM    TW S ALT++D C+ GF+G  + +I  
Sbjct: 111 SVDELSRTLGVLKHLRVSGGSAKEFRWQMSNAQTWASAALTDDDTCLDGFQGMDDGEIKT 170

Query: 92  LLRNGMVKVGYIMSNALALVNKL 109
            ++  M KV  + SNAL +VN+L
Sbjct: 171 EVKQWMTKVARVTSNALYMVNQL 193

BLAST of Csa4G615740 vs. TAIR10
Match: AT5G62360.1 (AT5G62360.1 Plant invertase/pectin methylesterase inhibitor superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-08
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 1

Query: 33  IDELHMSFGVLRRLSRRNFDTQMGYLTTWVSIALTNEDICVKGFEG----GREKIVNLLR 92
           ++EL  S G + +LS  N++  +  + TWVS ALT+ + C  GFEG    G+ K+  L+R
Sbjct: 121 LEELRKSIGEMCQLSGSNYEVYISDIQTWVSAALTDVNTCTDGFEGEDMDGKVKV--LVR 180

Query: 93  NGMVKVGYIMSNALALVN 107
             ++ + ++ SNALAL+N
Sbjct: 181 GRILVIAHLTSNALALIN 196

BLAST of Csa4G615740 vs. TAIR10
Match: AT1G62760.1 (AT1G62760.1 Plant invertase/pectin methylesterase inhibitor superfamily protein)

HSP 1 Score: 52.4 bits (124), Expect = 2.9e-07
Identity = 25/56 (44.64%), Postives = 35/56 (62.50%), Query Frame = 1

Query: 51  FDTQMGYLTTWVSIALTNEDICVKGFEGGREKIVNLLRNGMVKVGYIMSNALALVN 107
           F+  M  + TWVS ALTN+D C+ GF   +  + +L+R  +V+V  + SNALAL+N
Sbjct: 247 FEMVMSDVETWVSAALTNDDTCMDGFSLVKTAVKDLVRRHVVEVARLTSNALALIN 302

BLAST of Csa4G615740 vs. NCBI nr
Match: gi|700199796|gb|KGN54954.1| (hypothetical protein Csa_4G615740 [Cucumis sativus])

HSP 1 Score: 298.9 bits (764), Expect = 5.0e-78
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1

Query: 1   MANPLLPSPFVFVSLLFLLSWLTHFAKVFEAAIDELHMSFGVLRRLSRRNFDTQMGYLTT 60
           MANPLLPSPFVFVSLLFLLSWLTHFAKVFEAAIDELHMSFGVLRRLSRRNFDTQMGYLTT
Sbjct: 1   MANPLLPSPFVFVSLLFLLSWLTHFAKVFEAAIDELHMSFGVLRRLSRRNFDTQMGYLTT 60

Query: 61  WVSIALTNEDICVKGFEGGREKIVNLLRNGMVKVGYIMSNALALVNKLVVSIFEIGRRFG 120
           WVSIALTNEDICVKGFEGGREKIVNLLRNGMVKVGYIMSNALALVNKLVVSIFEIGRRFG
Sbjct: 61  WVSIALTNEDICVKGFEGGREKIVNLLRNGMVKVGYIMSNALALVNKLVVSIFEIGRRFG 120

Query: 121 ISLEFDVEIGYYNDDVLDKIGFFFVAYGD 150
           ISLEFDVEIGYYNDDVLDKIGFFFVAYGD
Sbjct: 121 ISLEFDVEIGYYNDDVLDKIGFFFVAYGD 149

BLAST of Csa4G615740 vs. NCBI nr
Match: gi|659101359|ref|XP_008451567.1| (PREDICTED: 21 kDa protein [Cucumis melo])

HSP 1 Score: 133.7 bits (335), Expect = 2.8e-28
Identity = 68/88 (77.27%), Postives = 76/88 (86.36%), Query Frame = 1

Query: 27  KVFEAAIDELHMSFGVLRRLSRRNFDTQMGYLTTWVSIALTNEDICVKGFEGGREKIVNL 86
           +VF+AAIDELH S GVLRRLSRRNFD+QMG LTTWVS ALT+ED CV+GFEG R K+V+L
Sbjct: 105 EVFDAAIDELHRSLGVLRRLSRRNFDSQMGDLTTWVSAALTDEDTCVEGFEGERGKVVSL 164

Query: 87  LRNGMVKVGYIMSNALALVNKLVVSIFE 115
           LRN +VKVGYI SNALALVNKL  S FE
Sbjct: 165 LRNRVVKVGYITSNALALVNKLATSGFE 192

BLAST of Csa4G615740 vs. NCBI nr
Match: gi|778728057|ref|XP_011659361.1| (PREDICTED: 21 kDa protein [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 4.7e-28
Identity = 68/88 (77.27%), Postives = 73/88 (82.95%), Query Frame = 1

Query: 27  KVFEAAIDELHMSFGVLRRLSRRNFDTQMGYLTTWVSIALTNEDICVKGFEGGREKIVNL 86
           +VFEAAIDELH S GVLRRLSRRNFD QMG LTTWVS ALT+ED CV+GFEG   K+V L
Sbjct: 105 EVFEAAIDELHRSLGVLRRLSRRNFDAQMGDLTTWVSAALTDEDTCVEGFEGEEGKVVTL 164

Query: 87  LRNGMVKVGYIMSNALALVNKLVVSIFE 115
           LRN +VKVGYI SNALALVNKL  S FE
Sbjct: 165 LRNRVVKVGYITSNALALVNKLAASSFE 192

BLAST of Csa4G615740 vs. NCBI nr
Match: gi|357511265|ref|XP_003625921.1| (plant invertase/pectin methylesterase inhibitor [Medicago truncatula])

HSP 1 Score: 103.6 bits (257), Expect = 3.1e-19
Identity = 52/87 (59.77%), Postives = 62/87 (71.26%), Query Frame = 1

Query: 22  LTHFAKVFEAAIDELHMSFGVLRRLSRRNFDTQMGYLTTWVSIALTNEDICVKGFEGGRE 81
           L+   + F  A+DELH S GVLR+LS+  F TQMG L TW+S ALTNED C+ GFEG  E
Sbjct: 101 LSDCIETFGYAVDELHKSLGVLRKLSKNTFSTQMGDLNTWISAALTNEDTCLDGFEGKTE 160

Query: 82  KIVNLLRNGMVKVGYIMSNALALVNKL 109
           K + LL+N +  V YI SNALALVNKL
Sbjct: 161 KKIKLLQNKVKNVSYITSNALALVNKL 187

BLAST of Csa4G615740 vs. NCBI nr
Match: gi|388500440|gb|AFK38286.1| (unknown [Lotus japonicus])

HSP 1 Score: 103.6 bits (257), Expect = 3.1e-19
Identity = 51/90 (56.67%), Postives = 64/90 (71.11%), Query Frame = 1

Query: 22  LTHFAKVFEAAIDELHMSFGVLRRLSRRNFDTQMGYLTTWVSIALTNEDICVKGFEGGRE 81
           L+   + F  A+DELH S GVLRRLS++ F TQMG L TW+S ALT+ED C+ GFEG  E
Sbjct: 104 LSDCVECFADALDELHRSLGVLRRLSKKTFSTQMGDLNTWISAALTDEDTCIDGFEGKTE 163

Query: 82  KIVNLLRNGMVKVGYIMSNALALVNKLVVS 112
           + + LL+N +  V YI SNALALVNKL  +
Sbjct: 164 RQIKLLQNRVQNVSYITSNALALVNKLATT 193

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L1N4_CUCSA3.5e-78100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G615740 PE=4 SV=1[more]
A0A0A0KAX0_CUCSA3.3e-2877.27Uncharacterized protein OS=Cucumis sativus GN=Csa_7G397050 PE=4 SV=1[more]
I3SDE4_LOTJA2.1e-1956.67Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
G7LBZ5_MEDTR2.1e-1959.77Plant invertase/pectin methylesterase inhibitor OS=Medicago truncatula GN=MTR_7g... [more]
V7D1N5_PHAVU3.6e-1957.78Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G207300g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G47670.11.2e-1039.33 Plant invertase/pectin methylesterase inhibitor superfamily protein[more]
AT3G62820.11.2e-1036.56 Plant invertase/pectin methylesterase inhibitor superfamily protein[more]
AT5G20740.18.9e-0939.76 Plant invertase/pectin methylesterase inhibitor superfamily protein[more]
AT5G62360.11.5e-0838.46 Plant invertase/pectin methylesterase inhibitor superfamily protein[more]
AT1G62760.12.9e-0744.64 Plant invertase/pectin methylesterase inhibitor superfamily protein[more]
Match NameE-valueIdentityDescription
gi|700199796|gb|KGN54954.1|5.0e-78100.00hypothetical protein Csa_4G615740 [Cucumis sativus][more]
gi|659101359|ref|XP_008451567.1|2.8e-2877.27PREDICTED: 21 kDa protein [Cucumis melo][more]
gi|778728057|ref|XP_011659361.1|4.7e-2877.27PREDICTED: 21 kDa protein [Cucumis sativus][more]
gi|357511265|ref|XP_003625921.1|3.1e-1959.77plant invertase/pectin methylesterase inhibitor [Medicago truncatula][more]
gi|388500440|gb|AFK38286.1|3.1e-1956.67unknown [Lotus japonicus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006501Pectinesterase_inhib_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004857enzyme inhibitor activity
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043086 negative regulation of catalytic activity
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004857 enzyme inhibitor activity
molecular_function GO:0030599 pectinesterase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G615740.1Csa4G615740.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006501Pectinesterase inhibitor domainGENE3DG3DSA:1.20.140.40coord: 28..108
score: 5.4
IPR006501Pectinesterase inhibitor domainPFAMPF04043PMEIcoord: 27..104
score: 5.
IPR006501Pectinesterase inhibitor domainunknownSSF101148Plant invertase/pectin methylesterase inhibitorcoord: 27..108
score: 4.45
NoneNo IPR availablePANTHERPTHR31080FAMILY NOT NAMEDcoord: 29..108
score: 2.4
NoneNo IPR availablePANTHERPTHR31080:SF16SUBFAMILY NOT NAMEDcoord: 29..108
score: 2.4

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None