Csa4G605530 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G605530
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 19262760 .. 19263056 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCCCTATCTCCCAATCTGATCCTATTGAATCTTCCAATCCTGTTCTCGAATCCTCACCAAATCCATCTGTTCCGACCTCTACTCTTTTCTTGCTATCCAACATCTGCAATCTTGTACCCATCCGACTGGACTCTATGAATTATGTTTTATGGAAATATCAAGTTTCCTCCTTCCTCAAAGCTCATTCCCTCTTTGGTCACATTGATGATTCCCTTCCCTGCCCTCCAAAAAAATTATCATCGTCGACAGCTGGAACTAATCCTGAAATCAACCCTGAATATCTCCAATGA

mRNA sequence

ATGGCCACCCCTATCTCCCAATCTGATCCTATTGAATCTTCCAATCCTGTTCTCGAATCCTCACCAAATCCATCTGTTCCGACCTCTACTCTTTTCTTGCTATCCAACATCTGCAATCTTGTACCCATCCGACTGGACTCTATGAATTATGTTTTATGGAAATATCAAGTTTCCTCCTTCCTCAAAGCTCATTCCCTCTTTGGTCACATTGATGATTCCCTTCCCTGCCCTCCAAAAAAATTATCATCGTCGACAGCTGGAACTAATCCTGAAATCAACCCTGAATATCTCCAATGA

Coding sequence (CDS)

ATGGCCACCCCTATCTCCCAATCTGATCCTATTGAATCTTCCAATCCTGTTCTCGAATCCTCACCAAATCCATCTGTTCCGACCTCTACTCTTTTCTTGCTATCCAACATCTGCAATCTTGTACCCATCCGACTGGACTCTATGAATTATGTTTTATGGAAATATCAAGTTTCCTCCTTCCTCAAAGCTCATTCCCTCTTTGGTCACATTGATGATTCCCTTCCCTGCCCTCCAAAAAAATTATCATCGTCGACAGCTGGAACTAATCCTGAAATCAACCCTGAATATCTCCAATGA

Protein sequence

MATPISQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSFLKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ*

Homology

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BLAST of Csa4G605530 vs. TrEMBL
Match: A0A0A0L1J8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G605530 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 2.9e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1  MATPISQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSF 60
          MATPISQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSF
Sbjct: 1  MATPISQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSF 60

Query: 61 LKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ 99
          LKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
Sbjct: 61 LKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ 98

[Close]

BLAST of Csa4G605530 vs. TrEMBL
Match: A0A0A0KMJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G272910 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.2e-24
Identity = 65/101 (64.36%), Postives = 71/101 (70.30%), Query Frame = 1


Query: 1   MATPISQSDPIESSNP---VLESSP-NPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQ 60
           MAT  SQ D I +  P      SSP N  VPTSTLFLLSNICN VP+RLDS NYVL KYQ
Sbjct: 1   MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQ 60

Query: 61  VSSFLKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYL 98
           VSS LKAH +FGHIDDS  CPPK LSS T GT P+ +  +L
Sbjct: 61  VSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYHL 101

[Close]

BLAST of Csa4G605530 vs. TrEMBL
Match: A0A0A0LSF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380600 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-13
Identity = 48/99 (48.48%), Postives = 55/99 (55.56%), Query Frame = 1


Query: 1  MATPISQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLD-SMNYVLWKYQVSS 60
          M T  SQSD I +  P                      NL+P +   S NY++WKYQVSS
Sbjct: 1  MPTSSSQSDSISTETPT---------------------NLIPTKSTYSTNYLIWKYQVSS 60

Query: 61 FLKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ 99
           LK HSLFGHIDDSLPCP     S+ AGT PEIN E+LQ
Sbjct: 61 ILKEHSLFGHIDDSLPCPFNFFPSTPAGTTPEINLEHLQ 78

[Close]

BLAST of Csa4G605530 vs. TrEMBL
Match: M5W6W4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb021461mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-06
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 1


Query: 12 ESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSFLKAHSLFGHID 71
          +SSN     + N ++P ST+   S+  ++V I+LD  NY LW  Q+   L++  L G++D
Sbjct: 3  DSSNSDSPQTNNTTLPNSTMNPFSSFTSVVNIKLDHTNYPLWLAQILPILRSRDLMGYVD 62

Query: 72 DSLPCPPKKLSSSTAGTNP 91
           ++ CP  +LS ST  TNP
Sbjct: 63 GTIVCPSPQLSRSTT-TNP 80

[Close]

BLAST of Csa4G605530 vs. TrEMBL
Match: A5BMU9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010513 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-06
Identity = 30/75 (40.00%), Postives = 49/75 (65.33%), Query Frame = 1


Query: 24 PSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSFLKAHSLFGHIDDSLPCPPKKLSS 83
          PS  TS+L  LS + + +PI+LD  NY+LWK Q+ + + A+    +IDD+ PCPP++L +
Sbjct: 13 PSSSTSSLVSLS-LNHALPIKLDRNNYILWKTQMENVVYANGFEEYIDDTKPCPPQELHT 72

Query: 84 STAGTNPEINPEYLQ 99
                 E+NP+++Q
Sbjct: 73 G------ELNPDFVQ 80

[Close]

BLAST of Csa4G605530 vs. NCBI nr
Match: gi|700199766|gb|KGN54924.1| (hypothetical protein Csa_4G605530 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 4.2e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1  MATPISQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSF 60
          MATPISQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSF
Sbjct: 1  MATPISQSDPIESSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSF 60

Query: 61 LKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ 99
          LKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ
Sbjct: 61 LKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYLQ 98

[Close]

BLAST of Csa4G605530 vs. NCBI nr
Match: gi|700195641|gb|KGN50818.1| (hypothetical protein Csa_5G272910 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 1.0e-23
Identity = 65/101 (64.36%), Postives = 71/101 (70.30%), Query Frame = 1


Query: 1   MATPISQSDPIESSNP---VLESSP-NPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQ 60
           MAT  SQ D I +  P      SSP N  VPTSTLFLLSNICN VP+RLDS NYVL KYQ
Sbjct: 1   MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQ 60

Query: 61  VSSFLKAHSLFGHIDDSLPCPPKKLSSSTAGTNPEINPEYL 98
           VSS LKAH +FGHIDDS  CPPK LSS T GT P+ +  +L
Sbjct: 61  VSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYHL 101

[Close]

BLAST of Csa4G605530 vs. NCBI nr
Match: gi|659094339|ref|XP_008448007.1| (PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform X2 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 1.0e-15
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 1


Query: 13 SSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSFLKAHSLFGHIDD 72
          SS+  L SS       S +FLLSNICNL+ +RLDS N+VLWK+Q+++ LKAH L+G ID 
Sbjct: 2  SSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDG 61

Query: 73 SLPCPPK-KLSSSTAGTNPEINPEY 97
          + PCPP+   SSST+   P+ NP Y
Sbjct: 62 TNPCPPRTNNSSSTSTVPPQSNPSY 86

[Close]

BLAST of Csa4G605530 vs. NCBI nr
Match: gi|659094337|ref|XP_008448006.1| (PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform X1 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 1.0e-15
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 1


Query: 13 SSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSFLKAHSLFGHIDD 72
          SS+  L SS       S +FLLSNICNL+ +RLDS N+VLWK+Q+++ LKAH L+G ID 
Sbjct: 2  SSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDG 61

Query: 73 SLPCPPK-KLSSSTAGTNPEINPEY 97
          + PCPP+   SSST+   P+ NP Y
Sbjct: 62 TNPCPPRTNNSSSTSTVPPQSNPSY 86

[Close]

BLAST of Csa4G605530 vs. NCBI nr
Match: gi|659094341|ref|XP_008448008.1| (PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform X3 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 1.0e-15
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 1


Query: 13 SSNPVLESSPNPSVPTSTLFLLSNICNLVPIRLDSMNYVLWKYQVSSFLKAHSLFGHIDD 72
          SS+  L SS       S +FLLSNICNL+ +RLDS N+VLWK+Q+++ LKAH L+G ID 
Sbjct: 2  SSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDG 61

Query: 73 SLPCPPK-KLSSSTAGTNPEINPEY 97
          + PCPP+   SSST+   P+ NP Y
Sbjct: 62 TNPCPPRTNNSSSTSTVPPQSNPSY 86

The following BLAST results are available for this feature:

BLAST of Csa4G605530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1J8_CUCSA	2.9e-49	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G605530 PE=4 SV=1	[more]
A0A0A0KMJ5_CUCSA	7.2e-24	64.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G272910 PE=4 SV=1	[more]
A0A0A0LSF9_CUCSA	1.2e-13	48.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380600 PE=4 SV=1	[more]
M5W6W4_PRUPE	4.0e-06	37.97	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb021461mg PE=4 SV=1	[more]
A5BMU9_VITVI	4.0e-06	40.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010513 PE=4 SV=1	[more]

BLAST of Csa4G605530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199766\|gb\|KGN54924.1\|	4.2e-49	100.00	hypothetical protein Csa_4G605530 [Cucumis sativus]	[more]
gi\|700195641\|gb\|KGN50818.1\|	1.0e-23	64.36	hypothetical protein Csa_5G272910 [Cucumis sativus]	[more]
gi\|659094339\|ref\|XP_008448007.1\|	1.0e-15	52.94	PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform X...	[more]
gi\|659094337\|ref\|XP_008448006.1\|	1.0e-15	52.94	PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform X...	[more]
gi\|659094341\|ref\|XP_008448008.1\|	1.0e-15	52.94	PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform X...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G605530.1	Csa4G605530.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G605530	Melon (DHL92) v3.6.1	cumedB307
Csa4G605530	Silver-seed gourd	carcuB0338
Csa4G605530	Silver-seed gourd	carcuB1060
Csa4G605530	Watermelon (97103) v2	cuwmbB279
Csa4G605530	Wax gourd	cuwgoB419
Csa4G605530	Cucumber (Gy14) v1	cgycuB042
Csa4G605530	Cucurbita maxima (Rimu)	cmacuB025
Csa4G605530	Cucurbita maxima (Rimu)	cmacuB467
Csa4G605530	Cucurbita moschata (Rifu)	cmocuB016
Csa4G605530	Cucurbita moschata (Rifu)	cmocuB455
Csa4G605530	Melon (DHL92) v3.5.1	cumeB321
Csa4G605530	Watermelon (Charleston Gray)	cuwcgB279
Csa4G605530	Watermelon (97103) v1	cuwmB349
Csa4G605530	Cucurbita pepo (Zucchini)	cpecuB573
Csa4G605530	Cucurbita pepo (Zucchini)	cpecuB786
Csa4G605530	Bottle gourd (USVL1VR-Ls)	culsiB283
Csa4G605530	Cucumber (Gy14) v2	cgybcuB166