Csa4G577370 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G577370
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 18942119 .. 18942621 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGGCAATATATTATGACCTGTGGTTTGGTATAGAGGGTAGTGGAGAGAGTGGTCACGTTGGAGATCTTGTGGAGTTTTGCGGGATCGTAGTAGTCCAAGATGATGTACAGACTGAGGAGATTTTTTATAACGGAGAGAGGATGTTTGTCAAGGATGGGAGAGAGAGCGTCATTGGCAACAACAAGGACAATGATAGTCTGACGGCTGTTTATCTCGTTGGCAAGTCTGGTTTGTTGGAGATATATAATTATTGAAAATGTTGTACTGAGGGAAGTCTTTTAGCATGTCGATAATATTGTGGACGAAGACGATGGCAGCAATGGTGGTGAAGGCAAGGAAGAGGAGAAGAGATTTGGAAGCTACCATGGAAAATAGAGAAAGAGAAGAGAGAAAGGATGGGTTTGGGAGAAGAGGGAAATCAGGGGAGGGGTCTGTGAGAGAAGAGGAAAATCGGTGGAAGTCTGAAAAAATAAAAAAGGAACATTTGGGGCAGTAA

mRNA sequence

ATGAAGAAGGCAATATATTATGACCTGTGGTTTGGTATAGAGGGTAGTGGAGAGAGTGGTCACGTTGGAGATCTTGTGGAGTTTTGCGGGATCGTAGTAGTCCAAGATGATGTACAGACTGAGGAGATTTTTTATAACGGAGAGAGGATGTTTGTCAAGGATGGGAGAGAGAGCGTCATTGGCAACAACAAGGACAATGATAGTCTGACGGCTGTTTATCTCGTTGGCAAGTCTGCAATGGTGGTGAAGGCAAGGAAGAGGAGAAGAGATTTGGAAGCTACCATGGAAAATAGAGAAAGAGAAGAGAGAAAGGATGGGTTTGGGAGAAGAGGGAAATCAGGGGAGGGGTCTGTGAGAGAAGAGGAAAATCGGTGGAAGTCTGAAAAAATAAAAAAGGAACATTTGGGGCAGTAA

Coding sequence (CDS)

ATGAAGAAGGCAATATATTATGACCTGTGGTTTGGTATAGAGGGTAGTGGAGAGAGTGGTCACGTTGGAGATCTTGTGGAGTTTTGCGGGATCGTAGTAGTCCAAGATGATGTACAGACTGAGGAGATTTTTTATAACGGAGAGAGGATGTTTGTCAAGGATGGGAGAGAGAGCGTCATTGGCAACAACAAGGACAATGATAGTCTGACGGCTGTTTATCTCGTTGGCAAGTCTGCAATGGTGGTGAAGGCAAGGAAGAGGAGAAGAGATTTGGAAGCTACCATGGAAAATAGAGAAAGAGAAGAGAGAAAGGATGGGTTTGGGAGAAGAGGGAAATCAGGGGAGGGGTCTGTGAGAGAAGAGGAAAATCGGTGGAAGTCTGAAAAAATAAAAAAGGAACATTTGGGGCAGTAA

Protein sequence

MKKAIYYDLWFGIEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVIGNNKDNDSLTAVYLVGKSAMVVKARKRRRDLEATMENREREERKDGFGRRGKSGEGSVREEENRWKSEKIKKEHLGQ*

Homology

[Close]

BLAST of Csa4G577370 vs. TrEMBL
Match: A0A0A0KZJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G577370 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 2.6e-72
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1


Query: 1   MKKAIYYDLWFGIEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVI 60
           MKKAIYYDLWFGIEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVI
Sbjct: 1   MKKAIYYDLWFGIEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVI 60

Query: 61  GNNKDNDSLTAVYLVGKSAMVVKARKRRRDLEATMENREREERKDGFGRRGKSGEGSVRE 120
           GNNKDNDSLTAVYLVGKSAMVVKARKRRRDLEATMENREREERKDGFGRRGKSGEGSVRE
Sbjct: 61  GNNKDNDSLTAVYLVGKSAMVVKARKRRRDLEATMENREREERKDGFGRRGKSGEGSVRE 120

Query: 121 EENRWKSEKIKKEHLGQ 138
           EENRWKSEKIKKEHLGQ
Sbjct: 121 EENRWKSEKIKKEHLGQ 137

[Close]

BLAST of Csa4G577370 vs. TrEMBL
Match: A0A0A0K4L9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290465 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.8e-12
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 1


Query: 18 ESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVIGNNKDNDSL 70
          E   VGDLVEFCGIVVVQDD++TEEIF N ERMFV+DGRES   N+KD DSL
Sbjct: 15 EKTTVGDLVEFCGIVVVQDDMETEEIFDNEERMFVEDGRESDNSNDKDGDSL 66

[Close]

BLAST of Csa4G577370 vs. TrEMBL
Match: A0A059C3M7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E01366 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.5e-06
Identity = 38/122 (31.15%), Postives = 55/122 (45.08%), Query Frame = 1


Query: 13  IEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVIGNNKDNDSLTAV 72
           ++G GE G +GDLVE  G+ VV+DDV  E +  +GE +   +G    +   +D D L AV
Sbjct: 299 VQGGGEGGALGDLVELLGVEVVEDDVDGELVLDDGEGLLAGEGGHGAVVEGEDGDGLAAV 358

Query: 73  YLVGKSAMVVKARKRRRDLEATMENREREERKDGFGRRGKSGEGSVREEENRWKSEKIKK 132
            LVG+  +     +         E    E  +DG       G G  +EEE     E  + 
Sbjct: 359 DLVGQLGLAEVGAE---------EGVLGEALEDGGDVVAGDGGGGAQEEEEEGGGEGAEC 411

Query: 133 EH 135
            H
Sbjct: 419 GH 411

[Close]

BLAST of Csa4G577370 vs. NCBI nr
Match: gi|700199740|gb|KGN54898.1| (hypothetical protein Csa_4G577370 [Cucumis sativus])

HSP 1 Score: 279.3 bits (713), Expect = 3.7e-72
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1


Query: 1   MKKAIYYDLWFGIEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVI 60
           MKKAIYYDLWFGIEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVI
Sbjct: 1   MKKAIYYDLWFGIEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVI 60

Query: 61  GNNKDNDSLTAVYLVGKSAMVVKARKRRRDLEATMENREREERKDGFGRRGKSGEGSVRE 120
           GNNKDNDSLTAVYLVGKSAMVVKARKRRRDLEATMENREREERKDGFGRRGKSGEGSVRE
Sbjct: 61  GNNKDNDSLTAVYLVGKSAMVVKARKRRRDLEATMENREREERKDGFGRRGKSGEGSVRE 120

Query: 121 EENRWKSEKIKKEHLGQ 138
           EENRWKSEKIKKEHLGQ
Sbjct: 121 EENRWKSEKIKKEHLGQ 137

[Close]

BLAST of Csa4G577370 vs. NCBI nr
Match: gi|700189190|gb|KGN44423.1| (hypothetical protein Csa_7G290465 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 1


Query: 18 ESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVIGNNKDNDSL 70
          E   VGDLVEFCGIVVVQDD++TEEIF N ERMFV+DGRES   N+KD DSL
Sbjct: 15 EKTTVGDLVEFCGIVVVQDDMETEEIFDNEERMFVEDGRESDNSNDKDGDSL 66

[Close]

BLAST of Csa4G577370 vs. NCBI nr
Match: gi|629107781|gb|KCW72927.1| (hypothetical protein EUGRSUZ_E01366 [Eucalyptus grandis])

HSP 1 Score: 58.9 bits (141), Expect = 8.0e-06
Identity = 38/122 (31.15%), Postives = 55/122 (45.08%), Query Frame = 1


Query: 13  IEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVIGNNKDNDSLTAV 72
           ++G GE G +GDLVE  G+ VV+DDV  E +  +GE +   +G    +   +D D L AV
Sbjct: 299 VQGGGEGGALGDLVELLGVEVVEDDVDGELVLDDGEGLLAGEGGHGAVVEGEDGDGLAAV 358

Query: 73  YLVGKSAMVVKARKRRRDLEATMENREREERKDGFGRRGKSGEGSVREEENRWKSEKIKK 132
            LVG+  +     +         E    E  +DG       G G  +EEE     E  + 
Sbjct: 359 DLVGQLGLAEVGAE---------EGVLGEALEDGGDVVAGDGGGGAQEEEEEGGGEGAEC 411

Query: 133 EH 135
            H
Sbjct: 419 GH 411

The following BLAST results are available for this feature:

BLAST of Csa4G577370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZJ2_CUCSA	2.6e-72	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G577370 PE=4 SV=1	[more]
A0A0A0K4L9_CUCSA	8.8e-12	75.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290465 PE=4 SV=1	[more]
A0A059C3M7_EUCGR	5.5e-06	31.15	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E01366 PE=4 SV=1	[more]

BLAST of Csa4G577370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199740\|gb\|KGN54898.1\|	3.7e-72	100.00	hypothetical protein Csa_4G577370 [Cucumis sativus]	[more]
gi\|700189190\|gb\|KGN44423.1\|	1.3e-11	75.00	hypothetical protein Csa_7G290465 [Cucumis sativus]	[more]
gi\|629107781\|gb\|KCW72927.1\|	8.0e-06	31.15	hypothetical protein EUGRSUZ_E01366 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G577370.1	Csa4G577370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 81..104 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G577370	CSPI04G21200	Wild cucumber (PI 183967)	cpicuB181

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G577370	Melon (DHL92) v3.5.1	cumeB332
Csa4G577370	Watermelon (Charleston Gray)	cuwcgB303
Csa4G577370	Cucumber (Gy14) v2	cgybcuB166
Csa4G577370	Watermelon (97103) v2	cuwmbB301
Csa4G577370	Wax gourd	cuwgoB404