CSPI04G21200 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G21200
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr4 : 19661189 .. 19661696 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGGCAATATATTATGACCTGTGGTTTGGTATAGAGGGTAGTGGAGAGAGTGGTCACGTTGGAGATCTTGTGGAGTTTTGCGGGATCGTAGTAGTCCAAGATGATGTACAGACTGAGGAGATTTTTTATAACGGAGAGAGGATGTTTGTCAAGGATGGGAGAGAGAGCGTCATTGGCAACAACAAGGACAATGATAGTCTGACGGCTGTTTATCTCGTTGGCAAGTCTGGTTTGTTGGAGATAATTATTGAAAATGTTGCACTGAGGGAAGTCTTTTAGCATGTCGATAATATTGTGGACGAAGACGATGGCAGCAATGGTGGTGAAGGCAAGGAAGAGGAGAAGAGATTTGGAAGCTACCATGGAAAATAGAGAAAGAGAAGAGAGAAAGGATGGGTTTGGGAGAAGAGGGAAATCAGGGGAGGGGTCTGTGAGAGAAGAGGAAAATCGGTGGAAGTCTGAAAAAATAAAAAAGGAACGTTTGGGGCAGCACAAAACCTAA

mRNA sequence

ATGAAGAAGGCAATATATTATGACCTGTGGTTTGGTATAGAGGGTAGTGGAGAGAGTGGTCACGTTGGAGATCTTGTGGAGTTTTGCGGGATCGTAGTAGTCCAAGATGATGTACAGACTGAGGAGATTTTTTATAACGGAGAGAGGATGTTTGTCAAGGATGGGAGAGAGAGCGTCATTGGCAACAACAAGGACAATGATAGTCTGACGGCTGTTTATCTCGTTGGCAAGTCTGGGAAGTCTTTTAGCATGTCGATAATATTGTGGACGAAGACGATGGCAGCAATGGTGGTGAAGGCAAGGAAGAGGAGAAGAGATTTGGAAGCTACCATGGAAAATAGAGAAAGAGAAGAGAGAAAGGATGGGTTTGGGAGAAGAGGGAAATCAGGGGAGGGGTCTGTGAGAGAAGAGGAAAATCGGTGGAAGTCTGAAAAAATAAAAAAGGAACGTTTGGGGCAGCACAAAACCTAA

Coding sequence (CDS)

ATGAAGAAGGCAATATATTATGACCTGTGGTTTGGTATAGAGGGTAGTGGAGAGAGTGGTCACGTTGGAGATCTTGTGGAGTTTTGCGGGATCGTAGTAGTCCAAGATGATGTACAGACTGAGGAGATTTTTTATAACGGAGAGAGGATGTTTGTCAAGGATGGGAGAGAGAGCGTCATTGGCAACAACAAGGACAATGATAGTCTGACGGCTGTTTATCTCGTTGGCAAGTCTGGGAAGTCTTTTAGCATGTCGATAATATTGTGGACGAAGACGATGGCAGCAATGGTGGTGAAGGCAAGGAAGAGGAGAAGAGATTTGGAAGCTACCATGGAAAATAGAGAAAGAGAAGAGAGAAAGGATGGGTTTGGGAGAAGAGGGAAATCAGGGGAGGGGTCTGTGAGAGAAGAGGAAAATCGGTGGAAGTCTGAAAAAATAAAAAAGGAACGTTTGGGGCAGCACAAAACCTAA

Homology

[Close]

BLAST of CSPI04G21200 vs. TrEMBL
Match: A0A0A0KZJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G577370 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 4.6e-65
Identity = 136/153 (88.89%), Postives = 136/153 (88.89%), Query Frame = 1


Query: 1   MKKAIYYDLWFGIEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVI 60
           MKKAIYYDLWFGIEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVI
Sbjct: 1   MKKAIYYDLWFGIEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVI 60

Query: 61  GNNKDNDSLTAVYLVGKSGKSFSMSIILWTKTMAAMVVKARKRRRDLEATMENREREERK 120
           GNNKDNDSLTAVYLVGKS                AMVVKARKRRRDLEATMENREREERK
Sbjct: 61  GNNKDNDSLTAVYLVGKS----------------AMVVKARKRRRDLEATMENREREERK 120

Query: 121 DGFGRRGKSGEGSVREEENRWKSEKIKKERLGQ 154
           DGFGRRGKSGEGSVREEENRWKSEKIKKE LGQ
Sbjct: 121 DGFGRRGKSGEGSVREEENRWKSEKIKKEHLGQ 137

[Close]

BLAST of CSPI04G21200 vs. TrEMBL
Match: A0A0A0K4L9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290465 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-11
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 1


Query: 18 ESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVIGNNKDNDSL 70
          E   VGDLVEFCGIVVVQDD++TEEIF N ERMFV+DGRES   N+KD DSL
Sbjct: 15 EKTTVGDLVEFCGIVVVQDDMETEEIFDNEERMFVEDGRESDNSNDKDGDSL 66

[Close]

BLAST of CSPI04G21200 vs. TrEMBL
Match: A0A059C3M7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E01366 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.3e-06
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 1


Query: 13  IEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVIGNNKDNDSLTAV 72
           ++G GE G +GDLVE  G+ VV+DDV  E +  +GE +   +G    +   +D D L AV
Sbjct: 299 VQGGGEGGALGDLVELLGVEVVEDDVDGELVLDDGEGLLAGEGGHGAVVEGEDGDGLAAV 358

Query: 73  YLVGKSG 80
            LVG+ G
Sbjct: 359 DLVGQLG 365

[Close]

BLAST of CSPI04G21200 vs. NCBI nr
Match: gi|700199740|gb|KGN54898.1| (hypothetical protein Csa_4G577370 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 6.6e-65
Identity = 136/153 (88.89%), Postives = 136/153 (88.89%), Query Frame = 1


Query: 1   MKKAIYYDLWFGIEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVI 60
           MKKAIYYDLWFGIEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVI
Sbjct: 1   MKKAIYYDLWFGIEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVI 60

Query: 61  GNNKDNDSLTAVYLVGKSGKSFSMSIILWTKTMAAMVVKARKRRRDLEATMENREREERK 120
           GNNKDNDSLTAVYLVGKS                AMVVKARKRRRDLEATMENREREERK
Sbjct: 61  GNNKDNDSLTAVYLVGKS----------------AMVVKARKRRRDLEATMENREREERK 120

Query: 121 DGFGRRGKSGEGSVREEENRWKSEKIKKERLGQ 154
           DGFGRRGKSGEGSVREEENRWKSEKIKKE LGQ
Sbjct: 121 DGFGRRGKSGEGSVREEENRWKSEKIKKEHLGQ 137

[Close]

BLAST of CSPI04G21200 vs. NCBI nr
Match: gi|700189190|gb|KGN44423.1| (hypothetical protein Csa_7G290465 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-11
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 1


Query: 18 ESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVIGNNKDNDSL 70
          E   VGDLVEFCGIVVVQDD++TEEIF N ERMFV+DGRES   N+KD DSL
Sbjct: 15 EKTTVGDLVEFCGIVVVQDDMETEEIFDNEERMFVEDGRESDNSNDKDGDSL 66

[Close]

BLAST of CSPI04G21200 vs. NCBI nr
Match: gi|629107781|gb|KCW72927.1| (hypothetical protein EUGRSUZ_E01366 [Eucalyptus grandis])

HSP 1 Score: 58.9 bits (141), Expect = 9.1e-06
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 1


Query: 13  IEGSGESGHVGDLVEFCGIVVVQDDVQTEEIFYNGERMFVKDGRESVIGNNKDNDSLTAV 72
           ++G GE G +GDLVE  G+ VV+DDV  E +  +GE +   +G    +   +D D L AV
Sbjct: 299 VQGGGEGGALGDLVELLGVEVVEDDVDGELVLDDGEGLLAGEGGHGAVVEGEDGDGLAAV 358

Query: 73  YLVGKSG 80
            LVG+ G
Sbjct: 359 DLVGQLG 365

The following BLAST results are available for this feature:

BLAST of CSPI04G21200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G21200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZJ2_CUCSA	4.6e-65	88.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G577370 PE=4 SV=1	[more]
A0A0A0K4L9_CUCSA	1.0e-11	75.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290465 PE=4 SV=1	[more]
A0A059C3M7_EUCGR	6.3e-06	41.79	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E01366 PE=4 SV=1	[more]

BLAST of CSPI04G21200 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G21200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199740\|gb\|KGN54898.1\|	6.6e-65	88.89	hypothetical protein Csa_4G577370 [Cucumis sativus]	[more]
gi\|700189190\|gb\|KGN44423.1\|	1.4e-11	75.00	hypothetical protein Csa_7G290465 [Cucumis sativus]	[more]
gi\|629107781\|gb\|KCW72927.1\|	9.1e-06	41.79	hypothetical protein EUGRSUZ_E01366 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G21200.1	CSPI04G21200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 97..120 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G21200	Csa4G577370	Cucumber (Chinese Long) v2	cpicuB181

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G21200	Cucumber (Gy14) v2	cgybcpiB169
CSPI04G21200	Cucumber (Chinese Long) v3	cpicucB212
CSPI04G21200	Watermelon (97103) v2	cpiwmbB308
CSPI04G21200	Cucumber (Gy14) v1	cgycpiB066