Csa4G571730 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G571730
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 18722165 .. 18723017 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACATGTTGTCCAAAAAGAAAAGTGTCTCTCAAGATGCTACTTTCTCTATTCCATCCAAAGATAAAGACTATGAAGAGATAACTTATTACGATTTTGATGATTCAACTACTGGTACTTTCAAGGATGATTCTGAAAATATTAACAAAGAAAATGTGAATGACCAAGATGAGAATGTCTACAGTGAGTTAGAAAAATATTGGGGCTTTGTTGAAGAACCTAATGAGGAAGGTCACGTGTCCAAGGTTCTGCCACTCGAGCCTCTGCTAAAAATTCCAAGAATAAGCCTTCCACTGTGTCGGTTCCATCCATTCCATTGGATGAAGTTTCCTTCCATTATGAAAAAGTACAATAACCCTTTGGAAGTATGTTTAGTGAAAAATCTTTCCAGAAAAGGAGTTGTCTGAGAAACCTCATGTCTGCTTGGAGGTCATGGAGCTGCATGTGAAAAATCGATATGATGAGGTCTGTGACTAACTTTGGTTCCTGTTGCCCTAAATTTGTAAGGGAGTTTGTTGTTTAATTTATCTCCATTTTTTTATGATGCCAACTCTTCTAATTATCGAAAAGTCCATGTTCGTGGTCACAATAGCTTTGTTTTCACAATGTCATCATCAACAAGTTTCTGGATATAAATGTGCCTCAGGGAATGCATAGACTAATAACCTCTTGAAGGACCTTGTGTCTGAATTGGCAGATGGTCTGCGAGAAAATTTGCTTAAATCTGGGTTACTTGCAACCATTGATCTAAGTGCCAAATATGATATCTTGTTTCACATTAGTTGTGGCAAACTGATGGCCTTCATCTCACCATACAAGGGTGTCACTTTATATGGCTACTTTGATTCTTAA

mRNA sequence

ATGGACATGTTGTCCAAAAAGAAAAGTGTCTCTCAAGATGCTACTTTCTCTATTCCATCCAAAGATAAAGACTATGAAGAGATAACTTATTACGATTTTGATGATTCAACTACTGGTACTTTCAAGGATGATTCTGAAAATATTAACAAAGAAAATGTGAATGACCAAGATGAGAATGTCTACAGTGAGTTAGAAAAATATTGGGGCTTTGTTGAAGAACCTAATGAGGAAGAAAAGGAGTTGTCTGAGAAACCTCATGTCTGCTTGGAGGTCATGGAGCTGCATGTGAAAAATCGATATGATGAGGACCTTGTGTCTGAATTGGCAGATGGTCTGCGAGAAAATTTGCTTAAATCTGGGTTACTTGCAACCATTGATCTAAGTGCCAAATATGATATCTTGTTTCACATTAGTTGTGGCAAACTGATGGCCTTCATCTCACCATACAAGGGTGTCACTTTATATGGCTACTTTGATTCTTAA

Coding sequence (CDS)

ATGGACATGTTGTCCAAAAAGAAAAGTGTCTCTCAAGATGCTACTTTCTCTATTCCATCCAAAGATAAAGACTATGAAGAGATAACTTATTACGATTTTGATGATTCAACTACTGGTACTTTCAAGGATGATTCTGAAAATATTAACAAAGAAAATGTGAATGACCAAGATGAGAATGTCTACAGTGAGTTAGAAAAATATTGGGGCTTTGTTGAAGAACCTAATGAGGAAGAAAAGGAGTTGTCTGAGAAACCTCATGTCTGCTTGGAGGTCATGGAGCTGCATGTGAAAAATCGATATGATGAGGACCTTGTGTCTGAATTGGCAGATGGTCTGCGAGAAAATTTGCTTAAATCTGGGTTACTTGCAACCATTGATCTAAGTGCCAAATATGATATCTTGTTTCACATTAGTTGTGGCAAACTGATGGCCTTCATCTCACCATACAAGGGTGTCACTTTATATGGCTACTTTGATTCTTAA

Protein sequence

MDMLSKKKSVSQDATFSIPSKDKDYEEITYYDFDDSTTGTFKDDSENINKENVNDQDENVYSELEKYWGFVEEPNEEEKELSEKPHVCLEVMELHVKNRYDEDLVSELADGLRENLLKSGLLATIDLSAKYDILFHISCGKLMAFISPYKGVTLYGYFDS*
Homology
[Close]
BLAST of Csa4G571730 vs. TrEMBL
Match: A0A0A0L2P5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G571730 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 9.8e-87
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1 

Query: 1   MDMLSKKKSVSQDATFSIPSKDKDYEEITYYDFDDSTTGTFKDDSENINKENVNDQDENV 60
           MDMLSKKKSVSQDATFSIPSKDKDYEEITYYDFDDSTTGTFKDDSENINKENVNDQDENV
Sbjct: 1   MDMLSKKKSVSQDATFSIPSKDKDYEEITYYDFDDSTTGTFKDDSENINKENVNDQDENV 60

Query: 61  YSELEKYWGFVEEPNEEEKELSEKPHVCLEVMELHVKNRYDEDLVSELADGLRENLLKSG 120
           YSELEKYWGFVEEPNEEEKELSEKPHVCLEVMELHVKNRYDEDLVSELADGLRENLLKSG
Sbjct: 61  YSELEKYWGFVEEPNEEEKELSEKPHVCLEVMELHVKNRYDEDLVSELADGLRENLLKSG 120

Query: 121 LLATIDLSAKYDILFHISCGKLMAFISPYKGVTLYGYFDS 161
           LLATIDLSAKYDILFHISCGKLMAFISPYKGVTLYGYFDS
Sbjct: 121 LLATIDLSAKYDILFHISCGKLMAFISPYKGVTLYGYFDS 160

[Close]
BLAST of Csa4G571730 vs. NCBI nr
Match: gi|700199719|gb|KGN54877.1| (hypothetical protein Csa_4G571730 [Cucumis sativus])

HSP 1 Score: 327.4 bits (838), Expect = 1.4e-86
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1 

Query: 1   MDMLSKKKSVSQDATFSIPSKDKDYEEITYYDFDDSTTGTFKDDSENINKENVNDQDENV 60
           MDMLSKKKSVSQDATFSIPSKDKDYEEITYYDFDDSTTGTFKDDSENINKENVNDQDENV
Sbjct: 1   MDMLSKKKSVSQDATFSIPSKDKDYEEITYYDFDDSTTGTFKDDSENINKENVNDQDENV 60

Query: 61  YSELEKYWGFVEEPNEEEKELSEKPHVCLEVMELHVKNRYDEDLVSELADGLRENLLKSG 120
           YSELEKYWGFVEEPNEEEKELSEKPHVCLEVMELHVKNRYDEDLVSELADGLRENLLKSG
Sbjct: 61  YSELEKYWGFVEEPNEEEKELSEKPHVCLEVMELHVKNRYDEDLVSELADGLRENLLKSG 120

Query: 121 LLATIDLSAKYDILFHISCGKLMAFISPYKGVTLYGYFDS 161
           LLATIDLSAKYDILFHISCGKLMAFISPYKGVTLYGYFDS
Sbjct: 121 LLATIDLSAKYDILFHISCGKLMAFISPYKGVTLYGYFDS 160

The following BLAST results are available for this feature:
BLAST of Csa4G571730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2P5_CUCSA9.8e-87100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G571730 PE=4 SV=1[more]
BLAST of Csa4G571730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199719|gb|KGN54877.1|1.4e-86100.00hypothetical protein Csa_4G571730 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G571730.1Csa4G571730.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G571730CsGy4G019670Cucumber (Gy14) v2cgybcuB166
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G571730Cucurbita moschata (Rifu)cmocuB658
Csa4G571730Cucurbita moschata (Rifu)cmocuB849
Csa4G571730Melon (DHL92) v3.5.1cumeB329
Csa4G571730Melon (DHL92) v3.5.1cumeB332
Csa4G571730Watermelon (Charleston Gray)cuwcgB303
Csa4G571730Watermelon (97103) v1cuwmB334
Csa4G571730Cucurbita pepo (Zucchini)cpecuB071
Csa4G571730Cucurbita pepo (Zucchini)cpecuB498
Csa4G571730Bottle gourd (USVL1VR-Ls)culsiB259
Csa4G571730Melon (DHL92) v3.6.1cumedB317
Csa4G571730Melon (DHL92) v3.6.1cumedB321
Csa4G571730Silver-seed gourdcarcuB0309
Csa4G571730Watermelon (97103) v2cuwmbB301
Csa4G571730Wax gourdcuwgoB404
Csa4G571730Wax gourdcuwgoB410
Csa4G571730Cucumber (Gy14) v1cgycuB501
Csa4G571730Cucurbita maxima (Rimu)cmacuB670
Csa4G571730Cucurbita maxima (Rimu)cmacuB861