Csa4G471190 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G471190
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 17041239 .. 17046602 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCTACTCTGTTTCTTCTTCGTCTTCTTCATTTTGTTCATGTTTTTCGTCTTTTTCTTCTCAATCATCTCTGTCCTTAACCAAATCCATCTCATTTCAACTTACTTTCTCCCCATAAATTCTGCCTTTCGATTTCCGTTTCCTGCTCCCTTTGACTTATCTTATGGTGATTGAACTCTTGGGTTGTTTTTCATCTTCTCTTAATCCTCAATTTGTCGTCAAATAGAGTTTCTCTATCAAACCATTATTCTGCTCATGCTTTGCTCCCGTTTTTCTCCATGGAAGTTGTTTCTCTCTATCGCCATGCCTTTTCGCTTCCTCTTCATCGCTCCGGTACTTTCTGTTTCTTTATATCTCTCGCCTTATGGTGTTTTTACAATTTTATGTGTTCCTGATTGGTGTATTTCTATTGGATCAAATGTTTAGGTTGTCAAGAACTTGGGCTTTTCAGTACTTCATCTTCTCTGCTGGTAGGCAGTTTGGCCAATCTATTTATCACTTTCGTTTCGTCTACTTGTTTGTTTTCTGTATATTTGTTGGAAACTCTGCACTCTGTTGTGCTTATGATGGAGAGAAGAAAATATTCATGTAATTACGTTTGTCTCAATATTGTAATCATGAATCAAGTAGGGACCTGTTCTCTGGAATGCTTATTGCGGCTAACCTAGTGCAAAATGAACTCTGGTGTTGCTAGTTTACGAATGAATGTTTAAACCATAAAGATCACAAAAAACATCATCTAACTGTGTTTTCTCCGTTGGATCTGGAGCCAAACATCTGGGACATTTTTGTGCCTCTAAGTTCTGAATTGAAGTTTTATCTAGGTTTATGAATTGAAGTATTATCTAGGTTTTAGCACAATTGTATATAGGACACAAACTTAATTAAGGAAAAAGTGATAAAACAGTGGGGAGATGAGAAATCTCCCACCAAATCCAGAGGAGTTTAAAAAAAAAAAACCACAATTTGTATTAAATAAATGAACAATCATAATTTCAAAACTCTTTTGGCGGAGAATACCGAGAAAAACAACTGTCCCAAAAGTCCTAAAAACAACTAGAATCTCCTTGAAAGGTTCTGCGATTATTTTTTAGTCTGCTTCCAAAAGATTTTATAGAGCCTTAAAGATGTTCGCAAAGAAATTGAAGAGGGGCTGAATGGTTGTCTTAGGGAAGCACTGGTAAATGTTGAAAGAGAGACTCTACAACTCTTAAATACGTAAGGGCAATCTAAAGTAAGATAGTTTTAGTCTTCTATAGCTCTGGCACAATGCCATTGCCAGCAGCTGGGAAGTAAAACAAAGTTTGGAAACCTTTTTGAATTCTATGGTAACAAATTAACCAGTCTTGGGCAAGACCTGAAGGAAGAAGTTTCTTTTTTAGGAACTTTAGCGTTCTAAATGTTCCTACCTATGTGGAATTGAGACAACCACGCTCCTTTAAAAGCTTATGCTGGAGGGACTTCCTCGAAAACATTCGTTTCAAGAGCCAAGTTTTGGAATTTGATCACTCGGAAATTGCAGCTCCATTTTTCTGAGTCTCAAGGAATGGATGCACAAGACCAATGAAACTAGTCATAATCTTAATGAGTCAAAGAACCTAATCCTAATCGTAGTCAATTAAGGTTTGATTTTTCTTTTCTTCTCTTCTCTCTCTCCCCCTTGGATGAAAACTACAAATGAAGTTATCCTAATTTACTGGAATGCTACTACATCAATAAATATTATACACAAATATCTATAAAATTATTAACTCCAACAGAAAGTTAACACGGTCCTCCGAGAAAAAAAATGATGTTATCACCTTGAGAGATTCTATACCATTTTTATGAGATATATATATATTTTAAACTTTTGGCAATAGAAGTCTAAGGGCCCTTTAAACTGAAAGTGCCTTTAAGGCGTGCTAACCATTCACAATCTGCTAAAATGTTATCTACTGGTAATGATTTTCCTCCGTAAGGGATGGTTTCATCATGAATCTTCGACCCAGTTTTGTTAGGAGGCTGAAAATGTAACTGCCAAGGGTATTGGGTGGTCTATTGATGAGGGGGCAGGTTGAAAAAAGTAAAGGATCTATGGGGTTATGAGTTCAAACTGTTGGTGGCCACCTATGTTAGAAATTAATATCCTGCAAGTCCTCCTGTTAGAATGGTTTAAACTCTGATCATTCTATAATGTTAGTGTTAGATTGGACTTCTTTAGTTTGTCATCGACTGTGAGGTGGGTAGTTTCCTGTTTTCTTATTTGAGGTTGATGGTTTTTGTTATAATCCCAAAAGAGGGACATTTGGAACCATGTGCATAAGATTAAAAACAGCTATGGTTCCTAAATAGCATTTTCTGTCATGAAGCATGGACACTTTTTTTTGGAGAGTGTCAGTTTCGAACACGTGTCCAACTCTGAAATGCGCTTGACACGCAAAATTTCGTGTATTTTCTTTTTTATTTTTTTAAATTCCGACATGCCTCGACACACACCGACACGTGGGAGGGGACACAAATATTCACTTTTCTCTATCCTCTCGAATATTCAACGTTCGGCCCCTCCCCTCCGACCAGACGACGTCGGAAACCGCCACTCACCCTCTCCGATCAGAAGACGCCGGTGACTTCAACTCCGATCAGACCATCCGTGCTTGCCCTTCGTTTTGGTTACTTGCTGTCTGGATTTAAAAGCTCTGCCCTTCGTTTTTTTTTTCTCTCTTTTTTGTGTATCAATGTTTGAGGGTTCCAACTGGTTTGACAGAACACACACACACATATATATCCTTTTTTATTCATTACTTTGTATTAATATGTAGTCCCAATGGAGATGTTGAAATTTATATAAAGTATGGTTTAGGCCATGGGCCTTTGTGGTGCATTTAGTTTTTTTTACTATTTTGTATTTATTTAATGTGGAATTTGTACACATATGGTGTGAGTTTTTGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGATTCTAACAAGGAAAAAGCCTAGAAAAAAGGAAAGAATTCCAACACTTTGTATTAATATGTAGTCCCAATGAAGATGTTGAAATTTATATAAAGTATGGTTTAGGCCATGGGCCTTTGTGGTGCATTTAATTTTTTTTTACTATTTTGTATTTATTTAATGTGGAATTTGTACACATATGGTGTGAGTTTTTGGATTATTATCTGGAATTTTTGGTACGGTTTAATCAGATTTCAGAGACATGACGTGTCTTTGGAAAGGTGTATCTTGATGTTTTTGGTCTAAGAACATTTTTTTAGTGAATTCATTCTATTTTCTATGCTACACGTCATCTTTCTCCTTGTATACATCTACCCATAATAGTCCATCATCCACGAAACATTTTGTTTTGGATGAAAGTGTGATCTCTATTTAGGATTTTGTATTTGTATCGTAGTTTGGAACTTTTTATTGAAATCAAACAATTAATGTACTCTTTATTTATATTTTAAAGAAGTATTGTTATGTTCTAACATATATGAGTGATCTATCTACAAGTATTATCACATATATTATTTAAAAAGATAAAAAAATTATAACATGTCTTTAACGTGTCATGTCCTACTTTTCTAGAAATTGGCTGTATTGCATGTTGTCACGGGTCGTGTGTTACTGCCCGTGCCTCCTAGATTTTCTCTAAGGGAAGTAAGTTGACTCTCATCCAATTTGTTCTGTGTGGGATCCCAATTTGCTTTATATCTGTATCTAGAATCCATGTTGCTAGTGGTAGCTTTAACTTTAGAAAAGTTTTTTGTGGGAAGCAGTTCACAAAGGTGGGAGTTGGTCGTTCATTTGGTCAGTGGAGAAAATAGTGTTGAGGTTGGATAATCTAGAAAGCATTTGTAAGTTGAGACTCTGTAAGAAGGCCTTGTTGGCTAAACTTGATGCTCTTTGGCATTGGGTCATTATGAGCAAGTTACAAGTACGGTCCTCATGTTTTGGTGGCTAATCCTCGTGCGTGGGCCATTTTCTGTGGCCTTGTGTGCATGTGATAGAAGTCTATGAACTCCCATCCAGAAAAATTAACTCGTCCTCGAGTTCGACAGACAATCGGAACTCATATGGGACAAAGCAAGGAAAACAAAAAGCTACATTGTGAAAGTATTGCTGATAGTCATAGGTGTAGGAAGATCTTCATGACAGGTCTTGTTTCCAAATTTTTCCAGAATAGGAAATGATCTGAACTTCTTATTGGAATTTTAGAAAAAGAACCAACTTGAAATCTGTTGTGAATTTACACCATCACAAGGCCACCAGGCTGAAAGTAACGTGGTGACTATGAATGTCAACTTGAATCTTGTACTTTTTGTTGGAGCAATCAGATTGTTCACAACTTCTTATGAATCTGTTGAATATGATCAACTTGTGGTCAACCTCGGCACTAAGATCAACGTTAGGAGGTAATTTAAGAAGGTCAAATGTAAGATAAGTAGAATAAGTATAGATAACCTCGAATGGACACTTCCCAGTGGATCGATTTTGCATGAATTGTTATTATATGTAAATTCAGCTTTTTGAAGGGAAATATCCCACTTCCTAGGTTGATCCCCGCTTAGGCACTGAGTGAAGAGAGGTTGCCTAATGTTCTATTAATCACTTGTATTTGACCATCTGTTTGAGGATGGCTGGTCGAATAGTACATCAAGTTCGTCTCCAACTTTTCTCAAAAAAACTTTTCTAAAAAAAAACTCATATATTTAAGATCCCTGTGTCTTGAACTATGTCTCTAAAGTAGATTAGTAATGTTTAAGGCATCTAATGGTTTTTTACAAGGTAAAGTGTGTCAATATAACAAAGATGTTACTATAATAAAATAACCCTAAGATATTACGCTAATTAAATAACCCTAATGTTAGTAAGTATAACAAACACTTTTACTCTCATCTTGTTCTTCCTCAACTTCTTCTTCAACTTCTTCATTGCTTTCTTGAATTGTTAAATTTCGTGTTTGAGGGCAATCAATTGATAGATGACCAACTTGTCCACACCTAAAACATTTACCAAGGTTAGGTCTATTATAAGGATTAGATGATTTATTTGTCAAAACAGCTTGTACTCACTCAATATTCTATGTTCAAGGGAGAGGGTGAGGGTGTTTGTAGAAGCATGGTGAAGGGGCATTGGTAGGATGAAGATGGAGCTAGAGATGCTCCATCGTGGTGTTTTGCACCATTTTTACTCATTATGGTGTTTTGGACCATTTCTACTCATTTATTTGTTTTATTAGAATGTTAATTACCATTTTAATTGCAGATGAATGGGTTTAGGAGTCTTCAATATAGTTCGTCTCTACATCAACAAGCAAATTTGGGAAATGCTGGTAAGTTATTTCTTGCTCAAAAATCTTGTTCTAGTTAA

mRNA sequence

ATGGAAGTTGTTTCTCTCTATCGCCATGCCTTTTCGCTTCCTCTTCATCGCTCCGGTTGTCAAGAACTTGGGCTTTTCAGTACTTCATCTTCTCTGCTGATGAATGGGTTTAGGAGTCTTCAATATAGTTCGTCTCTACATCAACAAGCAAATTTGGGAAATGCTGGTAAGTTATTTCTTGCTCAAAAATCTTGTTCTAGTTAA

Coding sequence (CDS)

ATGGAAGTTGTTTCTCTCTATCGCCATGCCTTTTCGCTTCCTCTTCATCGCTCCGGTTGTCAAGAACTTGGGCTTTTCAGTACTTCATCTTCTCTGCTGATGAATGGGTTTAGGAGTCTTCAATATAGTTCGTCTCTACATCAACAAGCAAATTTGGGAAATGCTGGTAAGTTATTTCTTGCTCAAAAATCTTGTTCTAGTTAA

Protein sequence

MEVVSLYRHAFSLPLHRSGCQELGLFSTSSSLLMNGFRSLQYSSSLHQQANLGNAGKLFLAQKSCSS*
Homology
[Close]
BLAST of Csa4G471190 vs. TrEMBL
Match: A0A0A0KZ25_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G471190 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.9e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MEVVSLYRHAFSLPLHRSGCQELGLFSTSSSLLMNGFRSLQYSSSLHQQANLGNAGKLFL 60
          MEVVSLYRHAFSLPLHRSGCQELGLFSTSSSLLMNGFRSLQYSSSLHQQANLGNAGKLFL
Sbjct: 1  MEVVSLYRHAFSLPLHRSGCQELGLFSTSSSLLMNGFRSLQYSSSLHQQANLGNAGKLFL 60

Query: 61 AQKSCSS 68
          AQKSCSS
Sbjct: 61 AQKSCSS 67

[Close]
BLAST of Csa4G471190 vs. NCBI nr
Match: gi|700199610|gb|KGN54768.1| (hypothetical protein Csa_4G471190 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 5.6e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MEVVSLYRHAFSLPLHRSGCQELGLFSTSSSLLMNGFRSLQYSSSLHQQANLGNAGKLFL 60
          MEVVSLYRHAFSLPLHRSGCQELGLFSTSSSLLMNGFRSLQYSSSLHQQANLGNAGKLFL
Sbjct: 1  MEVVSLYRHAFSLPLHRSGCQELGLFSTSSSLLMNGFRSLQYSSSLHQQANLGNAGKLFL 60

Query: 61 AQKSCSS 68
          AQKSCSS
Sbjct: 61 AQKSCSS 67

[Close]
BLAST of Csa4G471190 vs. NCBI nr
Match: gi|778694861|ref|XP_011653882.1| (PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 3.9e-22
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 1 

Query: 1  MEVVSLYRHAFSLPLHRSGCQELGLFSTSSSLLMNGFRSLQYSSSLHQQANLGNAGK 58
          MEVVSLYRHAFSLPLHRSGCQELGLFSTSSSLLMNGFRSLQYSSSLHQQANLGNA +
Sbjct: 1  MEVVSLYRHAFSLPLHRSGCQELGLFSTSSSLLMNGFRSLQYSSSLHQQANLGNAAQ 57

[Close]
BLAST of Csa4G471190 vs. NCBI nr
Match: gi|659083074|ref|XP_008442171.1| (PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-18
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 1 

Query: 1  MEVVSLYRHAFSLPLHRSGCQELGLFSTSSSLLMNGFRSLQYSSSLHQQANLGNAGKLF 60
          ME+VSLY HAFSLPLHRSG QELGLF TSSSLLMNGFRSLQYSSSLHQQA LGN  + +
Sbjct: 1  MEIVSLYHHAFSLPLHRSGYQELGLFGTSSSLLMNGFRSLQYSSSLHQQAYLGNTAQYY 59

The following BLAST results are available for this feature:
BLAST of Csa4G471190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ25_CUCSA3.9e-29100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G471190 PE=4 SV=1[more]
BLAST of Csa4G471190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199610|gb|KGN54768.1|5.6e-29100.00hypothetical protein Csa_4G471190 [Cucumis sativus][more]
gi|778694861|ref|XP_011653882.1|3.9e-2296.49PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic-like ... [more]
gi|659083074|ref|XP_008442171.1|1.5e-1883.05PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic isofo... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G471190.1Csa4G471190.1mRNA