Csa4G420180 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G420180
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 15840477 .. 15841194 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGAAAAAGAAAAAAGGAATTTGCATCTCTGCACAGAGAAAAAATGGCAGAGCCTCAAACTCGCGAAAATTTAGCCCAAAATCTATCACTTTCACCACTCTCCCGCTCCTCTTTCTCCCCCGCCGCCGTCGATCCAGATCCTGTCGACCCTCCCCTATCACCACCAGCCGTTGCCGTCCTGGAGGATCCGGATTTGATTCGAGAACCTAAACGCCGAAAGCACTGTCCAACGGCTTTGGAGAATCTTGACGAATTGACGTCCGCCTCCAACTCCAGCTTTGCCTTCACCTTCGACACGAAATTCTGCGGATTCTCAGCAGAGATCACTCCGAAATTTGGATCGTTCAACTCAATCGCACCGGAAATGGAGAGGAATCAAAAGAAAGCAGAGAGGGAAGTGAGAGTAGAGGAAGAAGAAAGCGTACATAAAGTTGAAGAAGAAGAAGAAGAAGAAATTGGAATTGCAGATGCGTTGCTAGAAGCAATTAATGAAGAAGAAGAAAGAAATTGATTGTAATGTTGAAAATTTCTCTTCTCTATCTCTGTGTTTCTCTTTGCGATATGAAATTATTGATGTAGTTGAAAATTAGGGTTTGAATGAAAGGGGGGAAAGGGAATTGAATTGGAATATTGAAGAGGAATTATTGATGAAGATTATTAATGGAATGGATTGAATGAATGTTTTTTGATTGAGTTATTAAAATTAAAATGATGAT

mRNA sequence

ATGGCAGAGCCTCAAACTCGCGAAAATTTAGCCCAAAATCTATCACTTTCACCACTCTCCCGCTCCTCTTTCTCCCCCGCCGCCGTCGATCCAGATCCTGTCGACCCTCCCCTATCACCACCAGCCGTTGCCGTCCTGGAGGATCCGGATTTGATTCGAGAACCTAAACGCCGAAAGCACTGTCCAACGGCTTTGGAGAATCTTGACGAATTGACGTCCGCCTCCAACTCCAGCTTTGCCTTCACCTTCGACACGAAATTCTGCGGATTCTCAGCAGAGATCACTCCGAAATTTGGATCGTTCAACTCAATCGCACCGGAAATGGAGAGGAATCAAAAGAAAGCAGAGAGGGAAGTGAGAGTAGAGGAAGAAGAAAGCGTACATAAAGTTGAAGAAGAAGAAGAAGAAGAAATTGGAATTGCAGATGCGTTGCTAGAAGCAATTAATGAAGAAGAAGAAAGAAATTGA

Coding sequence (CDS)

ATGGCAGAGCCTCAAACTCGCGAAAATTTAGCCCAAAATCTATCACTTTCACCACTCTCCCGCTCCTCTTTCTCCCCCGCCGCCGTCGATCCAGATCCTGTCGACCCTCCCCTATCACCACCAGCCGTTGCCGTCCTGGAGGATCCGGATTTGATTCGAGAACCTAAACGCCGAAAGCACTGTCCAACGGCTTTGGAGAATCTTGACGAATTGACGTCCGCCTCCAACTCCAGCTTTGCCTTCACCTTCGACACGAAATTCTGCGGATTCTCAGCAGAGATCACTCCGAAATTTGGATCGTTCAACTCAATCGCACCGGAAATGGAGAGGAATCAAAAGAAAGCAGAGAGGGAAGTGAGAGTAGAGGAAGAAGAAAGCGTACATAAAGTTGAAGAAGAAGAAGAAGAAGAAATTGGAATTGCAGATGCGTTGCTAGAAGCAATTAATGAAGAAGAAGAAAGAAATTGA

Protein sequence

MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVRVEEEESVHKVEEEEEEEIGIADALLEAINEEEERN*

Homology

[Close]

BLAST of Csa4G420180 vs. TrEMBL
Match: A0A0A0L245_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G420180 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 5.9e-81
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1


Query: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH 60
           MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH 60

Query: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR 120
           CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR
Sbjct: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR 120

Query: 121 VEEEESVHKVEEEEEEEIGIADALLEAINEEEERN 156
           VEEEESVHKVEEEEEEEIGIADALLEAINEEEERN
Sbjct: 121 VEEEESVHKVEEEEEEEIGIADALLEAINEEEERN 155

[Close]

BLAST of Csa4G420180 vs. TrEMBL
Match: A0A0V0HAK9_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.5e-17
Identity = 53/138 (38.41%), Postives = 82/138 (59.42%), Query Frame = 1


Query: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH 60
           M  P++ +  A+N S    S S+   +  DP P     S      +EDPD++R+PKRRK+
Sbjct: 1   MENPKSDQAPAENCSDPAPSNSN---SGDDPSPPTTAESWEEKPEIEDPDILRQPKRRKN 60

Query: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSA-EITPKFGSFNSIAPEMERNQKKAEREV 120
           CP+AL+  D + S SN  F+F+FD+KF G S  E+TPKFGSFN + P   ++ K  E  +
Sbjct: 61  CPSALDKFDSVNSGSNFGFSFSFDSKFSGCSTPEVTPKFGSFNRVKPGSTKDPKSEETVL 120

Query: 121 RVEEEESVHKVEEEEEEE 138
             E+E+     +++++EE
Sbjct: 121 EEEDED-----DDDDDEE 130

[Close]

BLAST of Csa4G420180 vs. TrEMBL
Match: M1CPV9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028103 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.6e-17
Identity = 54/138 (39.13%), Postives = 82/138 (59.42%), Query Frame = 1


Query: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH 60
           M  P++ +  A+N S    S S+ S    DP P     S      +EDPD++R+PKRRK+
Sbjct: 1   MENPKSDQAPAENCSDPAPSNSNSSD---DPLPSTTAESWEEKPEIEDPDILRQPKRRKN 60

Query: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSA-EITPKFGSFNSIAPEMERNQKKAEREV 120
           CP+AL+  D + S SN  F+F+FD+KF G S  E+TPKFGSFN + P   ++ K  E  +
Sbjct: 61  CPSALDKFDSVNSGSNFGFSFSFDSKFSGCSTPEVTPKFGSFNRVKPGSTKDPKSEETVL 120

Query: 121 RVEEEESVHKVEEEEEEE 138
             E+E+     +++++EE
Sbjct: 121 EEEDED-----DDDDDEE 130

[Close]

BLAST of Csa4G420180 vs. TrEMBL
Match: K4D2Y7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.9e-17
Identity = 54/120 (45.00%), Postives = 74/120 (61.67%), Query Frame = 1


Query: 26  PAAVDPDPVDPPLSPPAVAV-------LEDPDLIREPKRRKHCPTALENLDELTSASNSS 85
           PA  + +  D P SPP  A        +EDPD+IR+ KRRK+CP+AL+  D + S SN  
Sbjct: 17  PAPSNSNSGDDP-SPPTTAESWEEKPEIEDPDIIRQAKRRKNCPSALDKFDSVNSGSNFG 76

Query: 86  FAFTFDTKFCGFSA-EITPKFGSFNSIAPEMERNQKKAEREVRVEEEESVHKVEEEEEEE 138
           F+F+FD+KF G S  E+TPKFGSFN + P   ++ K          EE+V +VE+E+EEE
Sbjct: 77  FSFSFDSKFSGCSTPEVTPKFGSFNRVKPGSTKDPK---------SEETVLEVEDEDEEE 126

[Close]

BLAST of Csa4G420180 vs. TrEMBL
Match: W9S7C4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027885 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.3e-15
Identity = 54/135 (40.00%), Postives = 78/135 (57.78%), Query Frame = 1


Query: 16  LSPLSRSSFS---PAAVDPDPVDPPLSPPAV--AVLEDPDLIREPKRRKHCPTALENLDE 75
           L P S+++ S    A+ +PD  D   +P A    V EDPD  REPK+R+ CP ALE ++E
Sbjct: 7   LGPTSQTTLSLPSSASENPDSGDVSQTPTAADYPVSEDPDSTREPKKRRCCPKALEQVEE 66

Query: 76  LTSASNSS---FAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVRVEEE--- 135
           L    NS+   F+F+FDTKF G S EITPKFGSFN +     +N +  ++E   +++   
Sbjct: 67  LLIGPNSNPNLFSFSFDTKFSGCSPEITPKFGSFNLVVSNSAQNTRNCKKEAEGKDQTQN 126

Query: 136 ---ESVHKVEEEEEE 137
               S   VEE +++
Sbjct: 127 PTGSSSETVEETKQD 141

[Close]

BLAST of Csa4G420180 vs. NCBI nr
Match: gi|778694676|ref|XP_011653847.1| (PREDICTED: uncharacterized protein LOC105435263 isoform X1 [Cucumis sativus])

HSP 1 Score: 308.1 bits (788), Expect = 8.5e-81
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1


Query: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH 60
           MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH 60

Query: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR 120
           CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR
Sbjct: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR 120

Query: 121 VEEEESVHKVEEEEEEEIGIADALLEAINEEEERN 156
           VEEEESVHKVEEEEEEEIGIADALLEAINEEEERN
Sbjct: 121 VEEEESVHKVEEEEEEEIGIADALLEAINEEEERN 155

[Close]

BLAST of Csa4G420180 vs. NCBI nr
Match: gi|659111461|ref|XP_008455747.1| (PREDICTED: X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like [Cucumis melo])

HSP 1 Score: 290.4 bits (742), Expect = 1.8e-75
Identity = 145/153 (94.77%), Postives = 149/153 (97.39%), Query Frame = 1


Query: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH 60
           MAEPQTRENLAQNLSLSPLSRSSFSP AVDPDPVDPPLSPPAVA L+DPDLIREPKRRKH
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPPAVDPDPVDPPLSPPAVAPLQDPDLIREPKRRKH 60

Query: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR 120
           CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKK EREVR
Sbjct: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKEEREVR 120

Query: 121 VEEEESVHKVEEEEEEEIGIADALLEAINEEEE 154
           VEEEE+VHKVEEEEEEEIGIADALL+AI EEE+
Sbjct: 121 VEEEETVHKVEEEEEEEIGIADALLKAIKEEEQ 153

[Close]

BLAST of Csa4G420180 vs. NCBI nr
Match: gi|778694679|ref|XP_011653849.1| (PREDICTED: uncharacterized protein LOC105435263 isoform X2 [Cucumis sativus])

HSP 1 Score: 278.1 bits (710), Expect = 9.4e-72
Identity = 143/155 (92.26%), Postives = 143/155 (92.26%), Query Frame = 1


Query: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH 60
           MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH 60

Query: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR 120
           CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR
Sbjct: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR 120

Query: 121 VEEEESVHKVEEEEEEEIGIADALLEAINEEEERN 156
           VEEEESVHKVEEEEEEE            EEEERN
Sbjct: 121 VEEEESVHKVEEEEEEE------------EEEERN 143

[Close]

BLAST of Csa4G420180 vs. NCBI nr
Match: gi|460407780|ref|XP_004249328.1| (PREDICTED: uncharacterized protein LOC101250353 [Solanum lycopersicum])

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 54/120 (45.00%), Postives = 74/120 (61.67%), Query Frame = 1


Query: 26  PAAVDPDPVDPPLSPPAVAV-------LEDPDLIREPKRRKHCPTALENLDELTSASNSS 85
           PA  + +  D P SPP  A        +EDPD+IR+ KRRK+CP+AL+  D + S SN  
Sbjct: 17  PAPSNSNSGDDP-SPPTTAESWEEKPEIEDPDIIRQAKRRKNCPSALDKFDSVNSGSNFG 76

Query: 86  FAFTFDTKFCGFSA-EITPKFGSFNSIAPEMERNQKKAEREVRVEEEESVHKVEEEEEEE 138
           F+F+FD+KF G S  E+TPKFGSFN + P   ++ K          EE+V +VE+E+EEE
Sbjct: 77  FSFSFDSKFSGCSTPEVTPKFGSFNRVKPGSTKDPK---------SEETVLEVEDEDEEE 126

[Close]

BLAST of Csa4G420180 vs. NCBI nr
Match: gi|970056961|ref|XP_015055124.1| (PREDICTED: uncharacterized protein LOC107001678 [Solanum pennellii])

HSP 1 Score: 92.8 bits (229), Expect = 5.6e-16
Identity = 51/116 (43.97%), Postives = 70/116 (60.34%), Query Frame = 1


Query: 26  PAAVDPDPVDPPLSPPAVAV-------LEDPDLIREPKRRKHCPTALENLDELTSASNSS 85
           PA  + +  D P SPP  A        +EDPD+IR+ KRRK+CP+AL+  D + S SN  
Sbjct: 17  PAPSNSNSGDDP-SPPTTAESWEEKPEIEDPDIIRQAKRRKNCPSALDKFDSVNSGSNFG 76

Query: 86  FAFTFDTKFCGFSA-EITPKFGSFNSIAPEMERNQKKAEREVRVEEEESVHKVEEE 134
           F+F+FD+KF G S  E+TPKFGSFN + P   ++ K  E  +  E+EE    V E+
Sbjct: 77  FSFSFDSKFSGCSTPEVTPKFGSFNRVKPGSTKDPKSEETVLEEEDEEKPDVVVEK 131

The following BLAST results are available for this feature:

BLAST of Csa4G420180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L245_CUCSA	5.9e-81	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G420180 PE=4 SV=1	[more]
A0A0V0HAK9_SOLCH	3.5e-17	38.41	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]
M1CPV9_SOLTU	4.6e-17	39.13	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028103 PE=4 SV=1	[more]
K4D2Y7_SOLLC	7.9e-17	45.00	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
W9S7C4_9ROSA	3.3e-15	40.00	Uncharacterized protein OS=Morus notabilis GN=L484_027885 PE=4 SV=1	[more]

BLAST of Csa4G420180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778694676\|ref\|XP_011653847.1\|	8.5e-81	100.00	PREDICTED: uncharacterized protein LOC105435263 isoform X1 [Cucumis sativus]	[more]
gi\|659111461\|ref\|XP_008455747.1\|	1.8e-75	94.77	PREDICTED: X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-...	[more]
gi\|778694679\|ref\|XP_011653849.1\|	9.4e-72	92.26	PREDICTED: uncharacterized protein LOC105435263 isoform X2 [Cucumis sativus]	[more]
gi\|460407780\|ref\|XP_004249328.1\|	1.1e-16	45.00	PREDICTED: uncharacterized protein LOC101250353 [Solanum lycopersicum]	[more]
gi\|970056961\|ref\|XP_015055124.1\|	5.6e-16	43.97	PREDICTED: uncharacterized protein LOC107001678 [Solanum pennellii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU084434	cucumber EST collection version 3.0	transcribed_cluster
CU109063	cucumber EST collection version 3.0	transcribed_cluster
CU110717	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G420180.1	Csa4G420180.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU109063	CU109063	transcribed_cluster
CU084434	CU084434	transcribed_cluster
CU110717	CU110717	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 105..125 score: -coord: 131..151 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G420180	Cla012084	Watermelon (97103) v1	cuwmB340
Csa4G420180	MELO3C019130	Melon (DHL92) v3.5.1	cumeB272
Csa4G420180	ClCG04G005870	Watermelon (Charleston Gray)	cuwcgB304
Csa4G420180	Lsi01G017590	Bottle gourd (USVL1VR-Ls)	culsiB249
Csa4G420180	Cla97C04G072430	Watermelon (97103) v2	cuwmbB300
Csa4G420180	CSPI04G18900	Wild cucumber (PI 183967)	cpicuB181
Csa4G420180	CmaCh07G011050	Cucurbita maxima (Rimu)	cmacuB867
Csa4G420180	CmoCh07G011520	Cucurbita moschata (Rifu)	cmocuB855
Csa4G420180	Cp4.1LG10g10620	Cucurbita pepo (Zucchini)	cpecuB072
Csa4G420180	Carg13317	Silver-seed gourd	carcuB0609

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G420180	Cucurbita pepo (Zucchini)	cpecuB487
Csa4G420180	Cucumber (Gy14) v2	cgybcuB167
Csa4G420180	Melon (DHL92) v3.6.1	cumedB320
Csa4G420180	Wax gourd	cuwgoB408
Csa4G420180	Cucumber (Gy14) v1	cgycuB502
Csa4G420180	Cucurbita maxima (Rimu)	cmacuB669