CmaCh07G011050 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh07G011050
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr07 : 6000838 .. 6001383 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGCCCCAAACTCGAGAAACTTTCGCCCAAAATCCATCACTCTCAACACTCTCCCGCTCCTCTTTCGTTGCCGCCGATTCAGATCCCGCCGATCATCCTGTAGAACCACCTGCCGTAGCCGTTACCGTCACAGCCGCCTCCGATTCCGGTGATGTAGGCATCGAGGATCCCGATTTGCTTCGAGAACCTAAACGCCGAAAGCACTGTCCGACGGCGCTCGAGAATCTGGACGAATTGACGTCAGCGTCGAACTCCAGCTTCGCCTTCACTTTCGACACCAAATTCTGCGGGTTCTCCGCGGAGATCACTCCGAAATTCGGATCGTTCAACTCGATCGCACACGAAACCGAGACGAAGAAGAAGAAGAAGAAAGAACAGAGATCGGTTCTCGATTGGGCGAGCGGAGTAAGAGGAGACGAAGAAAAGGAGAAATTAGATTCCGTACAGCGCGAACAAGATGAACAAGAAAACAAAGTCACCGATGCGTTGCTAGAAGCAATTGGAGAAGGAAGAGAAGGTCTGGAATCTGTGGCGGATTGA

mRNA sequence

ATGGCAGAGCCCCAAACTCGAGAAACTTTCGCCCAAAATCCATCACTCTCAACACTCTCCCGCTCCTCTTTCGTTGCCGCCGATTCAGATCCCGCCGATCATCCTGTAGAACCACCTGCCGTAGCCGTTACCGTCACAGCCGCCTCCGATTCCGGTGATGTAGGCATCGAGGATCCCGATTTGCTTCGAGAACCTAAACGCCGAAAGCACTGTCCGACGGCGCTCGAGAATCTGGACGAATTGACGTCAGCGTCGAACTCCAGCTTCGCCTTCACTTTCGACACCAAATTCTGCGGGTTCTCCGCGGAGATCACTCCGAAATTCGGATCGTTCAACTCGATCGCACACGAAACCGAGACGAAGAAGAAGAAGAAGAAAGAACAGAGATCGGTTCTCGATTGGGCGAGCGGAGTAAGAGGAGACGAAGAAAAGGAGAAATTAGATTCCGTACAGCGCGAACAAGATGAACAAGAAAACAAAGTCACCGATGCGTTGCTAGAAGCAATTGGAGAAGGAAGAGAAGGTCTGGAATCTGTGGCGGATTGA

Coding sequence (CDS)

ATGGCAGAGCCCCAAACTCGAGAAACTTTCGCCCAAAATCCATCACTCTCAACACTCTCCCGCTCCTCTTTCGTTGCCGCCGATTCAGATCCCGCCGATCATCCTGTAGAACCACCTGCCGTAGCCGTTACCGTCACAGCCGCCTCCGATTCCGGTGATGTAGGCATCGAGGATCCCGATTTGCTTCGAGAACCTAAACGCCGAAAGCACTGTCCGACGGCGCTCGAGAATCTGGACGAATTGACGTCAGCGTCGAACTCCAGCTTCGCCTTCACTTTCGACACCAAATTCTGCGGGTTCTCCGCGGAGATCACTCCGAAATTCGGATCGTTCAACTCGATCGCACACGAAACCGAGACGAAGAAGAAGAAGAAGAAAGAACAGAGATCGGTTCTCGATTGGGCGAGCGGAGTAAGAGGAGACGAAGAAAAGGAGAAATTAGATTCCGTACAGCGCGAACAAGATGAACAAGAAAACAAAGTCACCGATGCGTTGCTAGAAGCAATTGGAGAAGGAAGAGAAGGTCTGGAATCTGTGGCGGATTGA

Protein sequence

MAEPQTRETFAQNPSLSTLSRSSFVAADSDPADHPVEPPAVAVTVTAASDSGDVGIEDPDLLREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAHETETKKKKKKEQRSVLDWASGVRGDEEKEKLDSVQREQDEQENKVTDALLEAIGEGREGLESVAD

Homology

[Close]

BLAST of CmaCh07G011050 vs. TrEMBL
Match: A0A0A0L245_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G420180 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.3e-42
Identity = 111/176 (63.07%), Postives = 124/176 (70.45%), Query Frame = 1


Query: 1   MAEPQTRETFAQNPSLSTLSRSSF--VAADSDPADHPVEPPAVAVTVTAASDSGDVGIED 60
           MAEPQTRE  AQN SLS LSRSSF   A D DP D P+ PPAVAV            +ED
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAV------------LED 60

Query: 61  PDLLREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAHET 120
           PDL+REPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIA E 
Sbjct: 61  PDLIREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEM 120

Query: 121 ETKKKKKKEQRSVLDWASGVRGDEEKEKLDSVQREQDEQENKVTDALLEAIGEGRE 175
           E  +KK + +  V          EE+E +  V+ E++E+E  + DALLEAI E  E
Sbjct: 121 ERNQKKAEREVRV----------EEEESVHKVE-EEEEEEIGIADALLEAINEEEE 153

[Close]

BLAST of CmaCh07G011050 vs. TrEMBL
Match: A0A0V0HAK9_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.0e-13
Identity = 53/125 (42.40%), Postives = 73/125 (58.40%), Query Frame = 1


Query: 27  ADSDPADHPVEPPAVAVTVTAASDSGDVGIEDPDLLREPKRRKHCPTALENLDELTSASN 86
           ++S+  D P  P       TA S      IEDPD+LR+PKRRK+CP+AL+  D + S SN
Sbjct: 20  SNSNSGDDPSPP------TTAESWEEKPEIEDPDILRQPKRRKNCPSALDKFDSVNSGSN 79

Query: 87  SSFAFTFDTKFCGFSA-EITPKFGSFNSIAHETETKKKKKKEQRSVLDWASGVRGDEEKE 146
             F+F+FD+KF G S  E+TPKFGSFN +        K  K + +VL+       D+++E
Sbjct: 80  FGFSFSFDSKFSGCSTPEVTPKFGSFNRV---KPGSTKDPKSEETVLEEEDEDDDDDDEE 135

Query: 147 KLDSV 151
           K D V
Sbjct: 140 KPDVV 135

[Close]

BLAST of CmaCh07G011050 vs. TrEMBL
Match: M1CPV9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028103 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-12
Identity = 52/125 (41.60%), Postives = 75/125 (60.00%), Query Frame = 1


Query: 27  ADSDPADHPVEPPAVAVTVTAASDSGDVGIEDPDLLREPKRRKHCPTALENLDELTSASN 86
           ++S+ +D P+       + TA S      IEDPD+LR+PKRRK+CP+AL+  D + S SN
Sbjct: 20  SNSNSSDDPLP------STTAESWEEKPEIEDPDILRQPKRRKNCPSALDKFDSVNSGSN 79

Query: 87  SSFAFTFDTKFCGFSA-EITPKFGSFNSIAHETETKKKKKKEQRSVLDWASGVRGDEEKE 146
             F+F+FD+KF G S  E+TPKFGSFN +        K  K + +VL+       D+++E
Sbjct: 80  FGFSFSFDSKFSGCSTPEVTPKFGSFNRV---KPGSTKDPKSEETVLEEEDEDDDDDDEE 135

Query: 147 KLDSV 151
           K D V
Sbjct: 140 KPDVV 135

[Close]

BLAST of CmaCh07G011050 vs. TrEMBL
Match: K4D2Y7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 52/125 (41.60%), Postives = 73/125 (58.40%), Query Frame = 1


Query: 27  ADSDPADHPVEPPAVAVTVTAASDSGDVGIEDPDLLREPKRRKHCPTALENLDELTSASN 86
           ++S+  D P  P       TA S      IEDPD++R+ KRRK+CP+AL+  D + S SN
Sbjct: 20  SNSNSGDDPSPP------TTAESWEEKPEIEDPDIIRQAKRRKNCPSALDKFDSVNSGSN 79

Query: 87  SSFAFTFDTKFCGFSA-EITPKFGSFNSIAHETETKKKKKKEQRSVLDWASGVRGDEEKE 146
             F+F+FD+KF G S  E+TPKFGSFN +        K  K + +VL+    V  ++E+E
Sbjct: 80  FGFSFSFDSKFSGCSTPEVTPKFGSFNRV---KPGSTKDPKSEETVLE----VEDEDEEE 131

Query: 147 KLDSV 151
           K D V
Sbjct: 140 KPDVV 131

[Close]

BLAST of CmaCh07G011050 vs. TrEMBL
Match: W9S7C4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027885 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.4e-10
Identity = 50/133 (37.59%), Postives = 67/133 (50.38%), Query Frame = 1


Query: 15  SLSTLSRSSFVAADSDPADHPVEPPAVAVTVTAASDSGDVGIEDPDLLREPKRRKHCPTA 74
           S +TLS  S  + + D  D    P A    V+          EDPD  REPK+R+ CP A
Sbjct: 11  SQTTLSLPSSASENPDSGDVSQTPTAADYPVS----------EDPDSTREPKKRRCCPKA 70

Query: 75  LENLDELTSASNSS---FAFTFDTKFCGFSAEITPKFGSFNSIAHETETKKKKKKEQRSV 134
           LE ++EL    NS+   F+F+FDTKF G S EITPKFGSFN +   +    +  K++   
Sbjct: 71  LEQVEELLIGPNSNPNLFSFSFDTKFSGCSPEITPKFGSFNLVVSNSAQNTRNCKKEAEG 130

Query: 135 LDWASGVRGDEEK 145
            D      G   +
Sbjct: 131 KDQTQNPTGSSSE 133

[Close]

BLAST of CmaCh07G011050 vs. NCBI nr
Match: gi|778694676|ref|XP_011653847.1| (PREDICTED: uncharacterized protein LOC105435263 isoform X1 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 1.8e-42
Identity = 111/176 (63.07%), Postives = 124/176 (70.45%), Query Frame = 1


Query: 1   MAEPQTRETFAQNPSLSTLSRSSF--VAADSDPADHPVEPPAVAVTVTAASDSGDVGIED 60
           MAEPQTRE  AQN SLS LSRSSF   A D DP D P+ PPAVAV            +ED
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAV------------LED 60

Query: 61  PDLLREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAHET 120
           PDL+REPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIA E 
Sbjct: 61  PDLIREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEM 120

Query: 121 ETKKKKKKEQRSVLDWASGVRGDEEKEKLDSVQREQDEQENKVTDALLEAIGEGRE 175
           E  +KK + +  V          EE+E +  V+ E++E+E  + DALLEAI E  E
Sbjct: 121 ERNQKKAEREVRV----------EEEESVHKVE-EEEEEEIGIADALLEAINEEEE 153

[Close]

BLAST of CmaCh07G011050 vs. NCBI nr
Match: gi|659111461|ref|XP_008455747.1| (PREDICTED: X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like [Cucumis melo])

HSP 1 Score: 174.5 bits (441), Expect = 1.7e-40
Identity = 107/173 (61.85%), Postives = 123/173 (71.10%), Query Frame = 1


Query: 1   MAEPQTRETFAQNPSLSTLSRSSF--VAADSDPADHPVEPPAVAVTVTAASDSGDVGIED 60
           MAEPQTRE  AQN SLS LSRSSF   A D DP D P+ PPAVA             ++D
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPPAVDPDPVDPPLSPPAVA------------PLQD 60

Query: 61  PDLLREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAHET 120
           PDL+REPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIA E 
Sbjct: 61  PDLIREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEM 120

Query: 121 ETKKKKKKEQRSVLDWASGVRGDEEKEKLDSVQREQDEQENKVTDALLEAIGE 172
           E  +KK++ +  V          EE+E +  V+ E++E+E  + DALL+AI E
Sbjct: 121 ERNQKKEEREVRV----------EEEETVHKVE-EEEEEEIGIADALLKAIKE 150

[Close]

BLAST of CmaCh07G011050 vs. NCBI nr
Match: gi|778694679|ref|XP_011653849.1| (PREDICTED: uncharacterized protein LOC105435263 isoform X2 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 6.5e-40
Identity = 102/162 (62.96%), Postives = 115/162 (70.99%), Query Frame = 1


Query: 1   MAEPQTRETFAQNPSLSTLSRSSF--VAADSDPADHPVEPPAVAVTVTAASDSGDVGIED 60
           MAEPQTRE  AQN SLS LSRSSF   A D DP D P+ PPAVAV            +ED
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAV------------LED 60

Query: 61  PDLLREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAHET 120
           PDL+REPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIA E 
Sbjct: 61  PDLIREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEM 120

Query: 121 ETKKKKKKEQRSVLDWASGVRGDEEKEKLDSVQREQDEQENK 161
           E  +KK + +  V          EE+E +  V+ E++E+E +
Sbjct: 121 ERNQKKAEREVRV----------EEEESVHKVEEEEEEEEEE 140

[Close]

BLAST of CmaCh07G011050 vs. NCBI nr
Match: gi|460407780|ref|XP_004249328.1| (PREDICTED: uncharacterized protein LOC101250353 [Solanum lycopersicum])

HSP 1 Score: 77.8 bits (190), Expect = 2.2e-11
Identity = 52/125 (41.60%), Postives = 73/125 (58.40%), Query Frame = 1


Query: 27  ADSDPADHPVEPPAVAVTVTAASDSGDVGIEDPDLLREPKRRKHCPTALENLDELTSASN 86
           ++S+  D P  P       TA S      IEDPD++R+ KRRK+CP+AL+  D + S SN
Sbjct: 20  SNSNSGDDPSPP------TTAESWEEKPEIEDPDIIRQAKRRKNCPSALDKFDSVNSGSN 79

Query: 87  SSFAFTFDTKFCGFSA-EITPKFGSFNSIAHETETKKKKKKEQRSVLDWASGVRGDEEKE 146
             F+F+FD+KF G S  E+TPKFGSFN +        K  K + +VL+    V  ++E+E
Sbjct: 80  FGFSFSFDSKFSGCSTPEVTPKFGSFNRV---KPGSTKDPKSEETVLE----VEDEDEEE 131

Query: 147 KLDSV 151
           K D V
Sbjct: 140 KPDVV 131

[Close]

BLAST of CmaCh07G011050 vs. NCBI nr
Match: gi|970056961|ref|XP_015055124.1| (PREDICTED: uncharacterized protein LOC107001678 [Solanum pennellii])

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-10
Identity = 51/125 (40.80%), Postives = 72/125 (57.60%), Query Frame = 1


Query: 27  ADSDPADHPVEPPAVAVTVTAASDSGDVGIEDPDLLREPKRRKHCPTALENLDELTSASN 86
           ++S+  D P  P       TA S      IEDPD++R+ KRRK+CP+AL+  D + S SN
Sbjct: 20  SNSNSGDDPSPP------TTAESWEEKPEIEDPDIIRQAKRRKNCPSALDKFDSVNSGSN 79

Query: 87  SSFAFTFDTKFCGFSA-EITPKFGSFNSIAHETETKKKKKKEQRSVLDWASGVRGDEEKE 146
             F+F+FD+KF G S  E+TPKFGSFN +        K  K + +VL+       +E++E
Sbjct: 80  FGFSFSFDSKFSGCSTPEVTPKFGSFNRV---KPGSTKDPKSEETVLE-------EEDEE 128

Query: 147 KLDSV 151
           K D V
Sbjct: 140 KPDVV 128

The following BLAST results are available for this feature:

BLAST of CmaCh07G011050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh07G011050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L245_CUCSA	1.3e-42	63.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G420180 PE=4 SV=1	[more]
A0A0V0HAK9_SOLCH	8.0e-13	42.40	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]
M1CPV9_SOLTU	1.0e-12	41.60	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028103 PE=4 SV=1	[more]
K4D2Y7_SOLLC	1.5e-11	41.60	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
W9S7C4_9ROSA	6.4e-10	37.59	Uncharacterized protein OS=Morus notabilis GN=L484_027885 PE=4 SV=1	[more]

BLAST of CmaCh07G011050 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh07G011050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778694676\|ref\|XP_011653847.1\|	1.8e-42	63.07	PREDICTED: uncharacterized protein LOC105435263 isoform X1 [Cucumis sativus]	[more]
gi\|659111461\|ref\|XP_008455747.1\|	1.7e-40	61.85	PREDICTED: X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-...	[more]
gi\|778694679\|ref\|XP_011653849.1\|	6.5e-40	62.96	PREDICTED: uncharacterized protein LOC105435263 isoform X2 [Cucumis sativus]	[more]
gi\|460407780\|ref\|XP_004249328.1\|	2.2e-11	41.60	PREDICTED: uncharacterized protein LOC101250353 [Solanum lycopersicum]	[more]
gi\|970056961\|ref\|XP_015055124.1\|	1.1e-10	40.80	PREDICTED: uncharacterized protein LOC107001678 [Solanum pennellii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G011050.1	CmaCh07G011050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 140..167 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh07G011050	Cla012084	Watermelon (97103) v1	cmawmB829
CmaCh07G011050	Csa4G420180	Cucumber (Chinese Long) v2	cmacuB867
CmaCh07G011050	MELO3C019130	Melon (DHL92) v3.5.1	cmameB802
CmaCh07G011050	ClCG04G005870	Watermelon (Charleston Gray)	cmawcgB763
CmaCh07G011050	CSPI04G18900	Wild cucumber (PI 183967)	cmacpiB883
CmaCh07G011050	CmoCh07G011520	Cucurbita moschata (Rifu)	cmacmoB875
CmaCh07G011050	Lsi01G017590	Bottle gourd (USVL1VR-Ls)	cmalsiB791
CmaCh07G011050	Cp4.1LG10g10620	Cucurbita pepo (Zucchini)	cmacpeB867
CmaCh07G011050	Cp4.1LG19g02410	Cucurbita pepo (Zucchini)	cmacpeB880
CmaCh07G011050	CsaV3_4G029260	Cucumber (Chinese Long) v3	cmacucB1021
CmaCh07G011050	Cla97C04G072430	Watermelon (97103) v2	cmawmbB892
CmaCh07G011050	Carg13317	Silver-seed gourd	carcmaB0818

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh07G011050	CmaCh03G001550	Cucurbita maxima (Rimu)	cmacmaB524

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh07G011050	Cucumber (Gy14) v2	cgybcmaB568
CmaCh07G011050	Melon (DHL92) v3.6.1	cmamedB902
CmaCh07G011050	Wax gourd	cmawgoB1063
CmaCh07G011050	Cucumber (Gy14) v1	cgycmaB0974