Csa4G293180 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G293180
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 11620496 .. 11620849 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGTTGGATGAACTCCGATTGATCGGACAGCTTGTTGAAGCAAAACGATCGGTAAAGAAATTGAGAAGAGAGATGAAAGGAATGGAAATTGAAAGTGACGGAAAAGGAAATAGAGATCGAAAAAAATGTAGAGAATGAAAGAATGGAAGAAGAAGTCAATAGGAACCGCGTCCCAGTTCAACGCAATTCTTCTTCTATGAGGCAATAGCTCGATTCCTTTGCCAGCAATTTCGCTCCAAATTTTATAACGATTACCGGAAACGGTCCCTTTCAAATCACGCTACTTCCATTAATTGGGCCTCCCTATTTCTTGGGCCTAAATCTGAGCCCATTTCCTTTAACAAGCCCTAA

mRNA sequence

ATGCCGTTGGATGAACTCCGATTGATCGGACAGCTTGTTGAAGCAAAACGATCGGAACCGCGTCCCAGTTCAACGCAATTCTTCTTCTATGAGGCAATAGCTCGATTCCTTTGCCAGCAATTTCGCTCCAAATTTTATAACGATTACCGGAAACGGTCCCTTTCAAATCACGCTACTTCCATTAATTGGGCCTCCCTATTTCTTGGGCCTAAATCTGAGCCCATTTCCTTTAACAAGCCCTAA

Coding sequence (CDS)

ATGCCGTTGGATGAACTCCGATTGATCGGACAGCTTGTTGAAGCAAAACGATCGGAACCGCGTCCCAGTTCAACGCAATTCTTCTTCTATGAGGCAATAGCTCGATTCCTTTGCCAGCAATTTCGCTCCAAATTTTATAACGATTACCGGAAACGGTCCCTTTCAAATCACGCTACTTCCATTAATTGGGCCTCCCTATTTCTTGGGCCTAAATCTGAGCCCATTTCCTTTAACAAGCCCTAA

Protein sequence

MPLDELRLIGQLVEAKRSEPRPSSTQFFFYEAIARFLCQQFRSKFYNDYRKRSLSNHATSINWASLFLGPKSEPISFNKP*
Homology
[Close]
BLAST of Csa4G293180 vs. TrEMBL
Match: A0A0A0KXD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G293180 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.9e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MPLDELRLIGQLVEAKRSEPRPSSTQFFFYEAIARFLCQQFRSKFYNDYRKRSLSNHATS 60
          MPLDELRLIGQLVEAKRSEPRPSSTQFFFYEAIARFLCQQFRSKFYNDYRKRSLSNHATS
Sbjct: 1  MPLDELRLIGQLVEAKRSEPRPSSTQFFFYEAIARFLCQQFRSKFYNDYRKRSLSNHATS 60

Query: 61 INWASLFLGPKSEPISFNKP 81
          INWASLFLGPKSEPISFNKP
Sbjct: 61 INWASLFLGPKSEPISFNKP 80

[Close]
BLAST of Csa4G293180 vs. NCBI nr
Match: gi|700199050|gb|KGN54208.1| (hypothetical protein Csa_4G293180 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 2.7e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MPLDELRLIGQLVEAKRSEPRPSSTQFFFYEAIARFLCQQFRSKFYNDYRKRSLSNHATS 60
          MPLDELRLIGQLVEAKRSEPRPSSTQFFFYEAIARFLCQQFRSKFYNDYRKRSLSNHATS
Sbjct: 1  MPLDELRLIGQLVEAKRSEPRPSSTQFFFYEAIARFLCQQFRSKFYNDYRKRSLSNHATS 60

Query: 61 INWASLFLGPKSEPISFNKP 81
          INWASLFLGPKSEPISFNKP
Sbjct: 61 INWASLFLGPKSEPISFNKP 80

The following BLAST results are available for this feature:
BLAST of Csa4G293180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXD4_CUCSA1.9e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G293180 PE=4 SV=1[more]
BLAST of Csa4G293180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199050|gb|KGN54208.1|2.7e-38100.00hypothetical protein Csa_4G293180 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G293180.1Csa4G293180.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G293180CSPI04G14210Wild cucumber (PI 183967)cpicuB181
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G293180Silver-seed gourdcarcuB0178
Csa4G293180Silver-seed gourdcarcuB0503
Csa4G293180Silver-seed gourdcarcuB0947
Csa4G293180Silver-seed gourdcarcuB1013
Csa4G293180Watermelon (97103) v2cuwmbB274
Csa4G293180Watermelon (97103) v2cuwmbB298
Csa4G293180Wax gourdcuwgoB357
Csa4G293180Wax gourdcuwgoB407
Csa4G293180Cucumber (Chinese Long) v2cucuB092
Csa4G293180Cucumber (Chinese Long) v2cucuB137
Csa4G293180Cucumber (Chinese Long) v2cucuB138
Csa4G293180Cucumber (Chinese Long) v2cucuB145
Csa4G293180Cucumber (Gy14) v1cgycuB055
Csa4G293180Cucumber (Gy14) v1cgycuB250
Csa4G293180Cucumber (Gy14) v1cgycuB437
Csa4G293180Cucurbita maxima (Rimu)cmacuB264
Csa4G293180Cucurbita maxima (Rimu)cmacuB668
Csa4G293180Cucurbita maxima (Rimu)cmacuB719
Csa4G293180Cucurbita maxima (Rimu)cmacuB837
Csa4G293180Cucurbita maxima (Rimu)cmacuB859
Csa4G293180Cucurbita moschata (Rifu)cmocuB249
Csa4G293180Cucurbita moschata (Rifu)cmocuB657
Csa4G293180Cucurbita moschata (Rifu)cmocuB711
Csa4G293180Cucurbita moschata (Rifu)cmocuB825
Csa4G293180Cucurbita moschata (Rifu)cmocuB847
Csa4G293180Melon (DHL92) v3.5.1cumeB294
Csa4G293180Melon (DHL92) v3.5.1cumeB323
Csa4G293180Watermelon (Charleston Gray)cuwcgB274
Csa4G293180Watermelon (Charleston Gray)cuwcgB301
Csa4G293180Watermelon (97103) v1cuwmB292
Csa4G293180Watermelon (97103) v1cuwmB338
Csa4G293180Cucurbita pepo (Zucchini)cpecuB070
Csa4G293180Cucurbita pepo (Zucchini)cpecuB414
Csa4G293180Cucurbita pepo (Zucchini)cpecuB496
Csa4G293180Cucurbita pepo (Zucchini)cpecuB619
Csa4G293180Cucurbita pepo (Zucchini)cpecuB871
Csa4G293180Bottle gourd (USVL1VR-Ls)culsiB248
Csa4G293180Bottle gourd (USVL1VR-Ls)culsiB278
Csa4G293180Cucumber (Gy14) v2cgybcuB123
Csa4G293180Cucumber (Gy14) v2cgybcuB167
Csa4G293180Cucumber (Gy14) v2cgybcuB221
Csa4G293180Cucumber (Gy14) v2cgybcuB271
Csa4G293180Melon (DHL92) v3.6.1cumedB261
Csa4G293180Melon (DHL92) v3.6.1cumedB278
Csa4G293180Melon (DHL92) v3.6.1cumedB310