CSPI04G14210 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G14210
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 11998254 .. 11998608 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGTTGGATGAACTCCGATTGATCGGACAGCTTGTTGAAGCAAAACGATCGGTAAAGAAATTGAGAAGAGAGATGAAAGGAATGGAAATTGAAAGTGACGGAAAAGGAAATAGAGATCGAAAAAAATGTAAGAGAATGAAAGAATGGAAGAAGAAGTCAATAGGAACCGCGTCCCAGTTCAACGCAATTCTTCTTCTATGAGGCAATAGCTCGATTCCTTTGCCAGCAATTTCGCTCCAAATTTTATAACGATTACCGGAAACGGTCCCTTTCAAATCACGCTACTTCCATTAATTGGGCCTCCCTATTTCTTGGGCCTAAATCTGAGCCCATTTCCTTTAACAAGCCCTAA

mRNA sequence

ATGCCGTTGGATGAACTCCGATTGATCGGACAGCTTGTTGAAGCAAAACGATCGGAACCGCGTCCCAGTTCAACGCAATTCTTCTTCTATGAGGCAATAGCTCGATTCCTTTGCCAGCAATTTCGCTCCAAATTTTATAACGATTACCGGAAACGGTCCCTTTCAAATCACGCTACTTCCATTAATTGGGCCTCCCTATTTCTTGGGCCTAAATCTGAGCCCATTTCCTTTAACAAGCCCTAA

Coding sequence (CDS)

ATGCCGTTGGATGAACTCCGATTGATCGGACAGCTTGTTGAAGCAAAACGATCGGAACCGCGTCCCAGTTCAACGCAATTCTTCTTCTATGAGGCAATAGCTCGATTCCTTTGCCAGCAATTTCGCTCCAAATTTTATAACGATTACCGGAAACGGTCCCTTTCAAATCACGCTACTTCCATTAATTGGGCCTCCCTATTTCTTGGGCCTAAATCTGAGCCCATTTCCTTTAACAAGCCCTAA
Homology
[Close]
BLAST of CSPI04G14210 vs. TrEMBL
Match: A0A0A0KXD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G293180 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.9e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MPLDELRLIGQLVEAKRSEPRPSSTQFFFYEAIARFLCQQFRSKFYNDYRKRSLSNHATS 60
          MPLDELRLIGQLVEAKRSEPRPSSTQFFFYEAIARFLCQQFRSKFYNDYRKRSLSNHATS
Sbjct: 1  MPLDELRLIGQLVEAKRSEPRPSSTQFFFYEAIARFLCQQFRSKFYNDYRKRSLSNHATS 60

Query: 61 INWASLFLGPKSEPISFNKP 81
          INWASLFLGPKSEPISFNKP
Sbjct: 61 INWASLFLGPKSEPISFNKP 80

[Close]
BLAST of CSPI04G14210 vs. NCBI nr
Match: gi|700199050|gb|KGN54208.1| (hypothetical protein Csa_4G293180 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 2.7e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MPLDELRLIGQLVEAKRSEPRPSSTQFFFYEAIARFLCQQFRSKFYNDYRKRSLSNHATS 60
          MPLDELRLIGQLVEAKRSEPRPSSTQFFFYEAIARFLCQQFRSKFYNDYRKRSLSNHATS
Sbjct: 1  MPLDELRLIGQLVEAKRSEPRPSSTQFFFYEAIARFLCQQFRSKFYNDYRKRSLSNHATS 60

Query: 61 INWASLFLGPKSEPISFNKP 81
          INWASLFLGPKSEPISFNKP
Sbjct: 61 INWASLFLGPKSEPISFNKP 80

The following BLAST results are available for this feature:
BLAST of CSPI04G14210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G14210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXD4_CUCSA1.9e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G293180 PE=4 SV=1[more]
BLAST of CSPI04G14210 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G14210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199050|gb|KGN54208.1|2.7e-38100.00hypothetical protein Csa_4G293180 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G14210.1CSPI04G14210.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G14210Csa4G293180Cucumber (Chinese Long) v2cpicuB181
CSPI04G14210CsaV3_4G024560Cucumber (Chinese Long) v3cpicucB212
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G14210Watermelon (97103) v2cpiwmbB280
CSPI04G14210Watermelon (97103) v2cpiwmbB295
CSPI04G14210Watermelon (97103) v2cpiwmbB307
CSPI04G14210Wax gourdcpiwgoB359
CSPI04G14210Wax gourdcpiwgoB410
CSPI04G14210Wild cucumber (PI 183967)cpicpiB107
CSPI04G14210Wild cucumber (PI 183967)cpicpiB153
CSPI04G14210Wild cucumber (PI 183967)cpicpiB162
CSPI04G14210Cucumber (Gy14) v1cgycpiB055
CSPI04G14210Cucumber (Gy14) v1cgycpiB257
CSPI04G14210Cucumber (Gy14) v1cgycpiB460
CSPI04G14210Cucurbita maxima (Rimu)cmacpiB266
CSPI04G14210Cucurbita maxima (Rimu)cmacpiB677
CSPI04G14210Cucurbita maxima (Rimu)cmacpiB726
CSPI04G14210Cucurbita maxima (Rimu)cmacpiB852
CSPI04G14210Cucurbita maxima (Rimu)cmacpiB876
CSPI04G14210Cucurbita moschata (Rifu)cmocpiB254
CSPI04G14210Cucurbita moschata (Rifu)cmocpiB669
CSPI04G14210Cucurbita moschata (Rifu)cmocpiB721
CSPI04G14210Cucurbita moschata (Rifu)cmocpiB834
CSPI04G14210Cucurbita moschata (Rifu)cmocpiB856
CSPI04G14210Cucumber (Chinese Long) v2cpicuB178
CSPI04G14210Cucumber (Chinese Long) v2cpicuB191
CSPI04G14210Cucumber (Chinese Long) v2cpicuB200
CSPI04G14210Melon (DHL92) v3.5.1cpimeB264
CSPI04G14210Melon (DHL92) v3.5.1cpimeB288
CSPI04G14210Melon (DHL92) v3.5.1cpimeB322
CSPI04G14210Watermelon (Charleston Gray)cpiwcgB282
CSPI04G14210Watermelon (Charleston Gray)cpiwcgB304
CSPI04G14210Watermelon (Charleston Gray)cpiwcgB305
CSPI04G14210Watermelon (Charleston Gray)cpiwcgB316
CSPI04G14210Watermelon (97103) v1cpiwmB292
CSPI04G14210Watermelon (97103) v1cpiwmB345
CSPI04G14210Watermelon (97103) v1cpiwmB354
CSPI04G14210Watermelon (97103) v1cpiwmB355
CSPI04G14210Cucurbita pepo (Zucchini)cpecpiB065
CSPI04G14210Cucurbita pepo (Zucchini)cpecpiB413
CSPI04G14210Cucurbita pepo (Zucchini)cpecpiB497
CSPI04G14210Cucurbita pepo (Zucchini)cpecpiB621
CSPI04G14210Cucurbita pepo (Zucchini)cpecpiB873
CSPI04G14210Bottle gourd (USVL1VR-Ls)cpilsiB246
CSPI04G14210Bottle gourd (USVL1VR-Ls)cpilsiB247
CSPI04G14210Bottle gourd (USVL1VR-Ls)cpilsiB276
CSPI04G14210Melon (DHL92) v3.6.1cpimedB260
CSPI04G14210Melon (DHL92) v3.6.1cpimedB282
CSPI04G14210Melon (DHL92) v3.6.1cpimedB313
CSPI04G14210Cucumber (Gy14) v2cgybcpiB124
CSPI04G14210Cucumber (Gy14) v2cgybcpiB170
CSPI04G14210Cucumber (Gy14) v2cgybcpiB220
CSPI04G14210Cucumber (Gy14) v2cgybcpiB278
CSPI04G14210Silver-seed gourdcarcpiB0184
CSPI04G14210Silver-seed gourdcarcpiB0511
CSPI04G14210Silver-seed gourdcarcpiB0970
CSPI04G14210Silver-seed gourdcarcpiB1037
CSPI04G14210Cucumber (Chinese Long) v3cpicucB209
CSPI04G14210Cucumber (Chinese Long) v3cpicucB232
CSPI04G14210Cucumber (Chinese Long) v3cpicucB241