Csa4G286410 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G286410
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 11085949 .. 11086793 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTATGGACAACGTCAGACAACCTCCTCCGCGCGTGCCAAAACCAACCACAGCCTTCCAAACGTGCCTTATGATATTTGTCTTCACTTGCAATGGTCCGAAGGGATACAAAAGCTGGTCATCCAAAAGGTTGGCGTCTTGTTTGTTTTTATCTGTGTTCTCTCCAAAGATTCAGTCTTCTCTATGATATCCCTTGCACTTTCTAACTCACTTCACTCTTAACCCACCTTTCATTCAACTCCATTTCATCTCTGTTCAAGAAAGGTAAATGCTTTTTTTTTCTGTTTCCTTGAACAAACAAACCCATCATTTTTCCTTCAAGTTATTGTTTTATCATGTTGGTTTGAGTGGTTGTAGCTAACCTTATGTTTTTTGAGGTTTTGTTTTCTTCAAGTTTTTGGCTAGTATTAGGTGTTGGAAACAAAATGAGTCTTTTTCCTTGAACTTGGAGGTTACTTCTTGTTTTAAACTTATTGGACCTTTTTTTTTTTTTTTTTACCATACAAACCTATTAGTTGTAAAACTGAAGCAGCTAATTTGTCTTGAAGTAGATTTCAACAAATTGTGATTCTTGTTTGCCATGCAAAATGGCTCTGTATTCTGTTTTTGGTTACCGAGAAAAAATAAAGAGTGAAGGATACCAATTTTCAAGTACACTCTACACAAGGAATTGATCAAGCTTTATGTGATTTTTTCAACTTTCAATGAGCAGCTGAATCAATGATGACATCAAAATGGTAAATGAATGGAAGTCTGTTTTTCATCTGCAGGTGATTGTGCTACATAATTGGAACATTCCACAGAGGCTAGCTGAGAGTTCTAAAATTTCATCCCTTTGCTAA

mRNA sequence

ATGGAGTATGGACAACGTCAGACAACCTCCTCCGCGCGTGCCAAAACCAACCACAGCCTTCCAAACGTGCCTTATGATATTTGTCTTCACTTGCAATGGTCCGAAGGGATACAAAAGCTGGTCATCCAAAAGGTGATTGTGCTACATAATTGGAACATTCCACAGAGGCTAGCTGAGAGTTCTAAAATTTCATCCCTTTGCTAA

Coding sequence (CDS)

ATGGAGTATGGACAACGTCAGACAACCTCCTCCGCGCGTGCCAAAACCAACCACAGCCTTCCAAACGTGCCTTATGATATTTGTCTTCACTTGCAATGGTCCGAAGGGATACAAAAGCTGGTCATCCAAAAGGTGATTGTGCTACATAATTGGAACATTCCACAGAGGCTAGCTGAGAGTTCTAAAATTTCATCCCTTTGCTAA

Protein sequence

MEYGQRQTTSSARAKTNHSLPNVPYDICLHLQWSEGIQKLVIQKVIVLHNWNIPQRLAESSKISSLC*
Homology
[Close]
BLAST of Csa4G286410 vs. TrEMBL
Match: A0A0A0L0J5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G286410 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 7.1e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MEYGQRQTTSSARAKTNHSLPNVPYDICLHLQWSEGIQKLVIQKVIVLHNWNIPQRLAES 60
          MEYGQRQTTSSARAKTNHSLPNVPYDICLHLQWSEGIQKLVIQKVIVLHNWNIPQRLAES
Sbjct: 1  MEYGQRQTTSSARAKTNHSLPNVPYDICLHLQWSEGIQKLVIQKVIVLHNWNIPQRLAES 60

Query: 61 SKISSLC 68
          SKISSLC
Sbjct: 61 SKISSLC 67

[Close]
BLAST of Csa4G286410 vs. NCBI nr
Match: gi|700198959|gb|KGN54117.1| (hypothetical protein Csa_4G286410 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.0e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MEYGQRQTTSSARAKTNHSLPNVPYDICLHLQWSEGIQKLVIQKVIVLHNWNIPQRLAES 60
          MEYGQRQTTSSARAKTNHSLPNVPYDICLHLQWSEGIQKLVIQKVIVLHNWNIPQRLAES
Sbjct: 1  MEYGQRQTTSSARAKTNHSLPNVPYDICLHLQWSEGIQKLVIQKVIVLHNWNIPQRLAES 60

Query: 61 SKISSLC 68
          SKISSLC
Sbjct: 61 SKISSLC 67

The following BLAST results are available for this feature:
BLAST of Csa4G286410 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0J5_CUCSA7.1e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G286410 PE=4 SV=1[more]
BLAST of Csa4G286410 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198959|gb|KGN54117.1|1.0e-30100.00hypothetical protein Csa_4G286410 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G286410.1Csa4G286410.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G286410CsGy4G012980Cucumber (Gy14) v2cgybcuB167
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G286410Melon (DHL92) v3.6.1cumedB279
Csa4G286410Silver-seed gourdcarcuB0552
Csa4G286410Silver-seed gourdcarcuB0935
Csa4G286410Watermelon (97103) v2cuwmbB287
Csa4G286410Wax gourdcuwgoB390
Csa4G286410Cucumber (Gy14) v1cgycuB220
Csa4G286410Cucurbita maxima (Rimu)cmacuB549
Csa4G286410Cucurbita maxima (Rimu)cmacuB605
Csa4G286410Cucurbita moschata (Rifu)cmocuB538
Csa4G286410Cucurbita moschata (Rifu)cmocuB596
Csa4G286410Melon (DHL92) v3.5.1cumeB295
Csa4G286410Watermelon (Charleston Gray)cuwcgB292
Csa4G286410Watermelon (97103) v1cuwmB347
Csa4G286410Cucurbita pepo (Zucchini)cpecuB278
Csa4G286410Cucurbita pepo (Zucchini)cpecuB728
Csa4G286410Bottle gourd (USVL1VR-Ls)culsiB246