CsGy4G012980 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G012980
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr4 : 18112510 .. 18113354 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTATGGACAACGTCAGACAACCTCCTCCGCGCGTGCCAAAACCAACCACAGCCTTCCAAACGTGCCTTATGATATTTGTCTTCACTTGCAATGGTCCGAAGGGATACAAAAGCTGGTCATCCAAAAGGTTGGCGTCTTGTTTGTTTTTATCTGTGTTCTCTCCAAAGATTCAGTCTTCTCTATGATATCCCTTGCACTTTCTAACTCACTTCACTCTTAACCCACCTTTCATTCAACTCCATTTCATCTCTGTTCAAGAAAGGTAAATGCTTTTTTTTTCTGTTTCCTTGAACAAACAAACCCATCATTTTTCCTTCAAGTTATTGTTTTATCATGTTGGTTTGAGTGGTTGTAGCTAACCTTATGTTTTTTGAGGTTTTGTTTTCTTCAAGTTTTTGGCTAGTATTAGGTGTTGGAAACAAAATGAGTCTTTTTCCTTGAACTTGGAGGTTACTTCTTGTTTTAAACTTATTGGACCTTTTTTTTTTTTTTTTTACCATACAAACCTATTAGTTGTAAAACTGAAGCAGCTAATTTGTCTTGAAGTAGATTTCAACAAATTGTGATTCTTGTTTGCCATGCAAAATGGCTCTGTATTCTGTTTTTGGTTACCGAGAAAAAATAAAGAGTGAAGGATACCAATTTTCAAGTACACTCTACACAAGGAATTGATCAAGCTTTATGTGATTTTTTCAACTTTCAATGAGCAGCTGAATCAATGATGACATCAAAATGGTAAATGAATGGAAGTCTGTTTTTCATCTGCAGGTGATTGTGCTACATAATTGGAACATTCCACAGAGGCTAGCTGAGAGTTCTAAAATTTCATCCCTTTGCTAA

mRNA sequence

ATGGAGTATGGACAACGTCAGACAACCTCCTCCGCGCGTGCCAAAACCAACCACAGCCTTCCAAACGTGCCTTATGATATTTGTCTTCACTTGCAATGGTCCGAAGGGATACAAAAGCTGGTCATCCAAAAGGTGATTGTGCTACATAATTGGAACATTCCACAGAGGCTAGCTGAGAGTTCTAAAATTTCATCCCTTTGCTAA

Coding sequence (CDS)

ATGGAGTATGGACAACGTCAGACAACCTCCTCCGCGCGTGCCAAAACCAACCACAGCCTTCCAAACGTGCCTTATGATATTTGTCTTCACTTGCAATGGTCCGAAGGGATACAAAAGCTGGTCATCCAAAAGGTGATTGTGCTACATAATTGGAACATTCCACAGAGGCTAGCTGAGAGTTCTAAAATTTCATCCCTTTGCTAA

Protein sequence

MEYGQRQTTSSARAKTNHSLPNVPYDICLHLQWSEGIQKLVIQKVIVLHNWNIPQRLAESSKISSLC

Homology

[Close]

BLAST of CsGy4G012980 vs. NCBI nr
Match: KGN54117.1 (hypothetical protein Csa_4G286410 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 1.5e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MEYGQRQTTSSARAKTNHSLPNVPYDICLHLQWSEGIQKLVIQKVIVLHNWNIPQRLAES 60
          MEYGQRQTTSSARAKTNHSLPNVPYDICLHLQWSEGIQKLVIQKVIVLHNWNIPQRLAES
Sbjct: 1  MEYGQRQTTSSARAKTNHSLPNVPYDICLHLQWSEGIQKLVIQKVIVLHNWNIPQRLAES 60

Query: 61 SKISSLC 68
          SKISSLC
Sbjct: 61 SKISSLC 67

[Close]

BLAST of CsGy4G012980 vs. TrEMBL
Match: tr|A0A0A0L0J5|A0A0A0L0J5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G286410 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 9.9e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MEYGQRQTTSSARAKTNHSLPNVPYDICLHLQWSEGIQKLVIQKVIVLHNWNIPQRLAES 60
          MEYGQRQTTSSARAKTNHSLPNVPYDICLHLQWSEGIQKLVIQKVIVLHNWNIPQRLAES
Sbjct: 1  MEYGQRQTTSSARAKTNHSLPNVPYDICLHLQWSEGIQKLVIQKVIVLHNWNIPQRLAES 60

Query: 61 SKISSLC 68
          SKISSLC
Sbjct: 61 SKISSLC 67

The following BLAST results are available for this feature:

BLAST of CsGy4G012980 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54117.1	1.5e-30	100.00	hypothetical protein Csa_4G286410 [Cucumis sativus]	[more]

BLAST of CsGy4G012980 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G012980 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G012980 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0J5\|A0A0A0L0J5_CUCSA	9.9e-31	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G286410 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G012980.1	CsGy4G012980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G012980	Csa4G286410	Cucumber (Chinese Long) v2	cgybcuB167
CsGy4G012980	CsaV3_4G023780	Cucumber (Chinese Long) v3	cgybcucB171

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G012980	Cucurbita maxima (Rimu)	cgybcmaB525
CsGy4G012980	Cucurbita maxima (Rimu)	cgybcmaB522
CsGy4G012980	Cucurbita moschata (Rifu)	cgybcmoB493
CsGy4G012980	Cucurbita moschata (Rifu)	cgybcmoB496
CsGy4G012980	Cucurbita pepo (Zucchini)	cgybcpeB496
CsGy4G012980	Cucurbita pepo (Zucchini)	cgybcpeB561
CsGy4G012980	Bottle gourd (USVL1VR-Ls)	cgyblsiB232
CsGy4G012980	Bottle gourd (USVL1VR-Ls)	cgyblsiB234
CsGy4G012980	Melon (DHL92) v3.5.1	cgybmeB249
CsGy4G012980	Melon (DHL92) v3.6.1	cgybmedB247
CsGy4G012980	Watermelon (Charleston Gray)	cgybwcgB272
CsGy4G012980	Watermelon (97103) v1	cgybwmB323
CsGy4G012980	Watermelon (97103) v1	cgybwmB325
CsGy4G012980	Wild cucumber (PI 183967)	cgybcpiB170
CsGy4G012980	Silver-seed gourd	carcgybB0529
CsGy4G012980	Silver-seed gourd	carcgybB0909
CsGy4G012980	Watermelon (97103) v2	cgybwmbB273
CsGy4G012980	Wax gourd	cgybwgoB373